Wall clock time and date at job start Tue Mar 31 2020 10:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46823 * 2 1 4 4 C 1.50698 * 109.47681 * 120.00281 * 2 1 3 5 5 H 1.07993 * 120.00148 * 119.99808 * 4 2 1 6 6 C 1.37875 * 119.99524 * 300.00229 * 4 2 1 7 7 N 1.31516 * 120.00474 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99785 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46907 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46778 * 299.99890 * 8 6 4 11 11 H 1.48496 * 109.46778 * 59.99685 * 8 6 4 12 12 N 1.46905 * 109.47186 * 240.00672 * 2 1 3 13 13 C 1.46893 * 111.00230 * 84.99348 * 12 2 1 14 14 C 1.53007 * 109.47075 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47253 * 179.97438 * 14 13 12 16 16 O 1.21300 * 119.99823 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00163 * 179.97438 * 15 14 13 18 18 C 1.40091 * 119.99992 * 175.55201 * 17 15 14 19 19 C 1.38795 * 120.06848 * 34.63308 * 18 17 15 20 20 C 1.38147 * 119.96678 * 179.72375 * 19 18 17 21 21 C 1.38377 * 120.09643 * 0.55227 * 20 19 18 22 22 Cl 1.73605 * 119.93311 * 179.74288 * 21 20 19 23 23 C 1.38365 * 120.13564 * 359.72285 * 21 20 19 24 24 C 1.38306 * 120.02823 * 0.02562 * 23 21 20 25 25 F 1.35098 * 120.04790 * 179.97438 * 24 23 21 26 26 H 1.09001 * 109.46823 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47362 * 299.99434 * 1 2 3 28 28 H 1.08993 * 109.47716 * 60.00074 * 1 2 3 29 29 H 0.97001 * 120.00257 * 179.97438 * 7 6 4 30 30 H 1.00900 * 110.99715 * 208.95502 * 12 2 1 31 31 H 1.08996 * 109.47465 * 300.00167 * 13 12 2 32 32 H 1.09002 * 109.47415 * 60.00480 * 13 12 2 33 33 H 1.09001 * 109.46746 * 299.99768 * 14 13 12 34 34 H 1.09002 * 109.46865 * 59.99827 * 14 13 12 35 35 H 0.97005 * 119.99570 * 355.54774 * 17 15 14 36 36 H 1.07997 * 120.01542 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.94659 * 180.25183 * 20 19 18 38 38 H 1.08003 * 119.98591 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9435 0.8301 2.6034 8 14 2.3227 -1.1196 4.0079 9 1 1.8281 -0.4193 5.2204 10 1 1.8284 -2.5199 4.0080 11 1 3.8077 -1.1189 4.0075 12 7 2.0196 -0.6924 -1.1995 13 6 2.0823 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5746 15 6 2.6586 0.4056 -4.7519 16 8 2.3271 1.5652 -4.6217 17 7 3.0849 -0.0430 -5.9491 18 6 3.0562 0.8035 -7.0650 19 6 3.3015 2.1613 -6.9143 20 6 3.2783 2.9932 -8.0170 21 6 2.9997 2.4767 -9.2702 22 17 2.9651 3.5271 -10.6520 23 6 2.7490 1.1247 -9.4242 24 6 2.7759 0.2861 -8.3248 25 9 2.5306 -1.0340 -8.4747 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.7089 1.1613 3.4844 30 1 2.9173 -1.1204 -1.0288 31 1 1.0869 0.6164 -2.5525 32 1 2.7587 1.0464 -2.1183 33 1 3.5903 -0.9269 -3.3692 34 1 1.9182 -1.3564 -3.8030 35 1 3.4116 -0.9520 -6.0381 36 1 3.5143 2.5666 -5.9362 37 1 3.4732 4.0490 -7.9000 38 1 2.5321 0.7241 -10.4035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602860302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:39 Heat of formation + Delta-G solvation = -84.172408 kcal Electronic energy + Delta-G solvation = -22579.513008 eV Core-core repulsion = 18782.247190 eV Total energy + Delta-G solvation = -3797.265818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.08994 -41.67528 -39.76604 -37.89865 -37.52231 -35.87740 -34.90129 -32.63980 -31.87602 -30.65166 -28.94644 -27.30205 -25.07993 -24.17488 -23.17718 -21.74045 -21.49222 -19.46192 -18.59819 -18.35656 -18.25182 -17.49656 -17.06579 -16.74267 -16.59644 -16.39143 -15.76605 -15.59415 -15.25695 -14.95767 -14.65588 -14.48470 -14.28793 -13.97089 -13.65871 -13.47329 -13.09040 -12.97455 -12.84757 -12.64861 -12.58521 -12.35844 -12.21325 -12.07787 -12.02621 -11.84835 -11.37703 -11.00576 -10.89270 -10.56361 -10.08968 -9.28747 -9.11366 -8.12184 -6.27288 -0.26589 -0.05093 0.95622 1.38363 1.44433 1.46671 1.54204 1.76894 2.32551 2.42832 2.97325 3.16291 3.42855 3.56022 3.79683 3.85038 3.96613 4.08342 4.24962 4.36370 4.45208 4.63775 4.79515 4.84813 4.87583 4.98529 4.99771 5.00608 5.07192 5.16478 5.22165 5.46519 5.61753 5.66868 5.84920 6.17560 6.21419 6.43740 6.75068 6.93795 7.01890 7.43314 8.93617 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.033365 B = 0.002090 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.004661 B =13397.034408 C =13844.270165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.214 3.786 3 H -0.035 1.035 4 C -0.536 4.536 5 H 0.066 0.934 6 C 0.008 3.992 7 N -0.921 5.921 8 Si 0.967 3.033 9 H -0.287 1.287 10 H -0.269 1.269 11 H -0.269 1.269 12 N -0.681 5.681 13 C 0.078 3.922 14 C -0.121 4.121 15 C 0.523 3.477 16 O -0.553 6.553 17 N -0.661 5.661 18 C 0.113 3.887 19 C -0.097 4.097 20 C -0.095 4.095 21 C -0.029 4.029 22 Cl -0.051 7.051 23 C -0.123 4.123 24 C 0.081 3.919 25 F -0.130 7.130 26 H 0.032 0.968 27 H 0.056 0.944 28 H 0.016 0.984 29 H 0.262 0.738 30 H 0.338 0.662 31 H 0.050 0.950 32 H 0.010 0.990 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.431 0.569 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 -0.684 -26.760 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 H -0.018 1.018 4 C -0.575 4.575 5 H 0.085 0.915 6 C -0.191 4.191 7 N -0.560 5.560 8 Si 0.792 3.208 9 H -0.213 1.213 10 H -0.194 1.194 11 H -0.194 1.194 12 N -0.312 5.312 13 C -0.052 4.052 14 C -0.160 4.160 15 C 0.312 3.688 16 O -0.430 6.430 17 N -0.308 5.308 18 C 0.017 3.983 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.057 4.057 22 Cl -0.022 7.022 23 C -0.142 4.142 24 C 0.059 3.941 25 F -0.108 7.108 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.156 0.844 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.270 0.730 36 H 0.163 0.837 37 H 0.177 0.823 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.300 0.001 -26.750 27.481 hybrid contribution 0.837 -0.043 1.049 1.343 sum 7.137 -0.043 -25.700 26.673 Atomic orbital electron populations 1.21551 0.97911 0.99009 0.98819 1.18909 0.92699 0.90731 0.87112 1.01769 1.21563 1.31783 1.12823 0.91300 0.91547 1.25821 0.95206 0.95698 1.02344 1.70041 1.37520 1.24176 1.24251 0.85478 0.78757 0.78621 0.77950 1.21279 1.19388 1.19382 1.60622 1.32445 1.33018 1.05139 1.21541 0.99567 0.93455 0.90623 1.21549 1.06204 0.98195 0.90085 1.21231 0.74590 0.88806 0.84156 1.90714 1.48162 1.19945 1.84131 1.43412 1.63855 1.17079 1.06496 1.18003 1.02101 0.92081 0.86149 1.21219 0.98842 0.91341 1.00382 1.21237 0.98792 1.01855 0.89581 1.20646 1.04644 0.91059 0.89320 1.98394 1.96873 1.65468 1.41424 1.21002 1.02122 0.91538 0.99573 1.17218 1.05335 0.78781 0.92797 1.91520 1.91982 1.31008 1.96299 0.94867 0.92549 0.96469 0.92875 0.84379 0.93094 0.97130 0.85576 0.85700 0.72985 0.83670 0.82339 0.81323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.87 9.19 71.98 0.66 -5.21 16 2 C 0.21 11.04 2.60 44.17 0.11 11.15 16 3 H -0.04 -2.05 7.80 -2.39 -0.02 -2.07 16 4 C -0.54 -29.14 8.59 25.60 0.22 -28.92 16 5 H 0.07 3.43 7.62 -2.91 -0.02 3.41 16 6 C 0.01 0.46 5.30 84.65 0.45 0.91 16 7 N -0.92 -53.70 11.32 21.45 0.24 -53.46 16 8 Si 0.97 43.02 29.54 68.60 2.03 45.04 16 9 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 N -0.68 -27.69 6.30 -495.46 -3.12 -30.81 16 13 C 0.08 2.77 4.77 86.31 0.41 3.18 16 14 C -0.12 -2.77 5.96 29.85 0.18 -2.59 16 15 C 0.52 12.76 7.68 87.66 0.67 13.43 16 16 O -0.55 -17.99 13.40 -3.09 -0.04 -18.03 16 17 N -0.66 -12.08 5.23 -303.29 -1.59 -13.67 16 18 C 0.11 2.23 6.32 38.15 0.24 2.47 16 19 C -0.10 -2.00 8.70 22.38 0.19 -1.81 16 20 C -0.10 -1.59 9.82 22.28 0.22 -1.37 16 21 C -0.03 -0.45 6.32 22.33 0.14 -0.31 16 22 Cl -0.05 -0.70 28.95 -2.72 -0.08 -0.78 16 23 C -0.12 -1.81 9.80 22.32 0.22 -1.59 16 24 C 0.08 1.40 7.31 22.48 0.16 1.56 16 25 F -0.13 -2.23 16.96 44.97 0.76 -1.46 16 26 H 0.03 1.63 8.14 -2.39 -0.02 1.62 16 27 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 28 H 0.02 0.79 7.45 -2.39 -0.02 0.77 16 29 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.34 12.70 8.22 -89.69 -0.74 11.96 16 31 H 0.05 2.01 7.39 -2.39 -0.02 1.99 16 32 H 0.01 0.41 8.01 -2.39 -0.02 0.39 16 33 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.43 5.12 8.67 -92.70 -0.80 4.31 16 36 H 0.15 3.48 6.19 -2.91 -0.02 3.46 16 37 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -66.38 341.67 1.67 -64.71 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.42 Total: 17.54 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 3.89 Total: -9.08 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -4.47 Total: -97.94 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.04 Total: -18.03 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.76 Total: -1.46 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -66.38 1.67 -64.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.462 kcal (2) G-P(sol) polarization free energy of solvation -66.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds