Wall clock time and date at job start Tue Mar 31 2020 10:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09005 * 109.46760 * 2 1 4 4 N 1.46897 * 109.46952 * 119.99402 * 2 1 3 5 5 C 1.46891 * 111.00475 * 279.88940 * 4 2 1 6 6 H 1.08998 * 109.47614 * 39.87309 * 5 4 2 7 7 C 1.53006 * 109.47390 * 159.87833 * 5 4 2 8 8 C 1.50706 * 109.47005 * 279.87512 * 5 4 2 9 9 H 1.07997 * 119.99711 * 359.97438 * 8 5 4 10 10 C 1.37881 * 120.00001 * 179.97438 * 8 5 4 11 11 N 1.31520 * 119.99915 * 359.97438 * 10 8 5 12 12 Si 1.86798 * 120.00054 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.47019 * 60.00167 * 12 10 8 14 14 H 1.48499 * 109.47185 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47135 * 300.00166 * 12 10 8 16 16 C 1.50701 * 109.47062 * 239.99974 * 2 1 3 17 17 O 1.21289 * 119.99516 * 239.99801 * 16 2 1 18 18 N 1.34777 * 119.99944 * 59.99935 * 16 2 1 19 19 C 1.40042 * 119.99656 * 185.56707 * 18 16 2 20 20 C 1.38799 * 120.07435 * 24.79783 * 19 18 16 21 21 C 1.38247 * 119.93830 * 179.79538 * 20 19 18 22 22 Cl 1.73605 * 119.95228 * 180.25176 * 21 20 19 23 23 C 1.38388 * 120.08966 * 0.48409 * 21 20 19 24 24 C 1.38258 * 120.13969 * 359.74319 * 23 21 20 25 25 C 1.38302 * 120.06204 * 0.02853 * 24 23 21 26 26 F 1.35098 * 120.04509 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.47099 * 295.00473 * 1 2 3 28 28 H 1.08996 * 109.47367 * 55.01108 * 1 2 3 29 29 H 1.09006 * 109.46847 * 175.01075 * 1 2 3 30 30 H 1.00910 * 110.99656 * 155.93304 * 4 2 1 31 31 H 1.08997 * 109.47236 * 185.04943 * 7 5 4 32 32 H 1.08999 * 109.46209 * 305.04491 * 7 5 4 33 33 H 1.09002 * 109.47002 * 65.04160 * 7 5 4 34 34 H 0.96994 * 119.99743 * 180.02562 * 11 10 8 35 35 H 0.96997 * 119.99735 * 5.56646 * 18 16 2 36 36 H 1.08001 * 120.02899 * 359.97438 * 20 19 18 37 37 H 1.07999 * 119.92718 * 179.73186 * 23 21 20 38 38 H 1.08000 * 119.96631 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.9731 0.1902 2.3728 6 1 1.0586 0.7826 2.3459 7 6 1.9961 -0.6549 3.6480 8 6 3.1674 1.1093 2.3577 9 1 3.8890 1.0439 1.5568 10 6 3.3388 2.0336 3.3663 11 7 2.4597 2.1136 4.3413 12 14 4.8195 3.1723 3.3480 13 1 4.7982 3.9921 2.1100 14 1 4.7724 4.0647 4.5340 15 1 6.0653 2.3650 3.3857 16 6 2.0324 -0.7104 -1.2305 17 8 2.7297 -1.6965 -1.1191 18 7 1.7068 -0.2500 -2.4546 19 6 2.0745 -0.9739 -3.5956 20 6 2.2917 -2.3422 -3.5112 21 6 2.6505 -3.0547 -4.6402 22 17 2.9157 -4.7673 -4.5364 23 6 2.8032 -2.4040 -5.8520 24 6 2.5924 -1.0404 -5.9390 25 6 2.2286 -0.3223 -4.8143 26 9 2.0232 1.0102 -4.8997 27 1 -0.3633 0.4344 0.9314 28 1 -0.3634 0.5892 -0.8419 29 1 -0.3633 -1.0238 -0.0894 30 1 2.9512 -1.0522 1.0544 31 1 1.8714 -0.0069 4.5156 32 1 1.1839 -1.3811 3.6171 33 1 2.9494 -1.1786 3.7197 34 1 2.5801 2.7641 5.0506 35 1 1.2177 0.5828 -2.5452 36 1 2.1776 -2.8502 -2.5650 37 1 3.0878 -2.9625 -6.7314 38 1 2.7119 -0.5354 -6.8862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:54 Heat of formation + Delta-G solvation = -77.629788 kcal Electronic energy + Delta-G solvation = -23602.514276 eV Core-core repulsion = 19805.532167 eV Total energy + Delta-G solvation = -3796.982109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.04720 -41.82687 -39.80775 -37.83855 -37.44296 -36.00161 -34.84394 -32.52773 -31.56786 -30.52084 -28.84506 -27.17508 -25.68282 -24.29024 -23.36359 -21.94442 -21.13618 -19.53148 -18.73206 -18.38271 -18.16984 -17.41034 -16.83835 -16.78635 -16.65308 -16.49489 -15.83470 -15.34739 -15.14742 -14.84348 -14.44398 -14.41041 -14.12307 -13.71436 -13.55042 -13.37864 -13.14321 -12.96530 -12.89228 -12.77803 -12.68695 -12.47463 -12.26111 -12.04984 -12.02240 -11.93746 -11.59505 -11.17469 -10.80542 -10.52114 -9.87888 -9.30578 -9.18818 -8.09921 -6.30816 -0.22531 -0.01644 1.00973 1.37314 1.37879 1.39807 1.46506 1.72443 2.36924 2.38521 2.99595 3.12327 3.44562 3.54696 3.64183 3.96059 4.02746 4.17848 4.22959 4.37028 4.58023 4.75419 4.82767 4.86512 4.94605 4.96017 5.10218 5.10480 5.14209 5.20903 5.32537 5.45527 5.64039 5.64634 5.98781 6.09062 6.11341 6.30437 6.67786 6.87305 6.92246 7.40791 8.88410 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.003305 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.394569 B = 8470.490504 C = 9054.803969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.073 3.927 3 H 0.068 0.932 4 N -0.672 5.672 5 C 0.215 3.785 6 H 0.022 0.978 7 C -0.115 4.115 8 C -0.565 4.565 9 H 0.044 0.956 10 C 0.027 3.973 11 N -0.908 5.908 12 Si 0.947 3.053 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.278 1.278 16 C 0.525 3.475 17 O -0.535 6.535 18 N -0.658 5.658 19 C 0.122 3.878 20 C -0.119 4.119 21 C -0.030 4.030 22 Cl -0.059 7.059 23 C -0.094 4.094 24 C -0.105 4.105 25 C 0.063 3.937 26 F -0.134 7.134 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.334 0.666 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.428 0.572 36 H 0.143 0.857 37 H 0.175 0.825 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 -5.768 -22.815 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.041 4.041 3 H 0.086 0.914 4 N -0.304 5.304 5 C 0.106 3.894 6 H 0.040 0.960 7 C -0.174 4.174 8 C -0.604 4.604 9 H 0.063 0.937 10 C -0.174 4.174 11 N -0.546 5.546 12 Si 0.773 3.227 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.203 1.203 16 C 0.314 3.686 17 O -0.411 6.411 18 N -0.304 5.304 19 C 0.025 3.975 20 C -0.140 4.140 21 C -0.058 4.058 22 Cl -0.030 7.030 23 C -0.113 4.113 24 C -0.124 4.124 25 C 0.041 3.959 26 F -0.113 7.113 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.267 0.733 36 H 0.161 0.839 37 H 0.193 0.807 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.506 -6.740 -22.317 23.574 hybrid contribution 1.366 1.743 0.515 2.273 sum -2.140 -4.997 -21.801 22.469 Atomic orbital electron populations 1.21716 0.90705 1.02766 1.03215 1.21424 0.98455 0.96689 0.87531 0.91440 1.60922 1.30181 1.36912 1.02338 1.19020 0.94821 0.88819 0.86725 0.95992 1.21531 0.97692 0.98024 1.00105 1.22047 1.09935 1.19407 1.08973 0.93740 1.25584 0.98489 0.98323 0.94997 1.69982 1.36402 1.36014 1.12227 0.85791 0.80254 0.78982 0.77683 1.19739 1.20577 1.20328 1.21164 0.78398 0.84239 0.84789 1.90633 1.36921 1.27041 1.86501 1.43369 1.56915 1.26696 1.03430 1.17790 1.02103 0.91250 0.86312 1.21113 1.01309 0.91810 0.99815 1.20897 1.03814 0.85996 0.95074 1.98385 1.94822 1.11231 1.98592 1.21225 0.99484 0.93788 0.96853 1.21292 0.99074 0.93737 0.98300 1.17601 1.06416 0.77908 0.94005 1.91506 1.92817 1.30125 1.96836 0.92127 0.89411 0.91971 0.84831 0.92130 0.95009 0.96121 0.92665 0.73305 0.83929 0.80720 0.79905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.26 71.99 0.67 -2.98 16 2 C 0.07 2.56 2.87 44.17 0.13 2.69 16 3 H 0.07 2.56 7.49 -2.38 -0.02 2.54 16 4 N -0.67 -28.89 5.86 -477.14 -2.80 -31.69 16 5 C 0.21 10.59 2.43 44.17 0.11 10.70 16 6 H 0.02 1.16 6.75 -2.39 -0.02 1.14 16 7 C -0.12 -5.68 9.22 71.98 0.66 -5.01 16 8 C -0.56 -30.30 8.01 25.60 0.21 -30.09 16 9 H 0.04 2.41 7.80 -2.91 -0.02 2.38 16 10 C 0.03 1.45 5.30 84.65 0.45 1.90 16 11 N -0.91 -50.70 11.38 21.45 0.24 -50.45 16 12 Si 0.95 42.89 29.54 68.60 2.03 44.92 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 C 0.53 17.28 6.98 87.66 0.61 17.89 16 17 O -0.54 -20.79 12.91 -3.06 -0.04 -20.82 16 18 N -0.66 -16.83 5.19 -303.33 -1.57 -18.40 16 19 C 0.12 3.01 6.44 38.16 0.25 3.25 16 20 C -0.12 -3.11 8.50 22.41 0.19 -2.92 16 21 C -0.03 -0.63 6.32 22.31 0.14 -0.49 16 22 Cl -0.06 -1.21 28.95 -2.72 -0.08 -1.29 16 23 C -0.09 -1.35 9.82 22.31 0.22 -1.13 16 24 C -0.11 -1.46 10.02 22.29 0.22 -1.23 16 25 C 0.06 1.24 7.31 22.48 0.16 1.41 16 26 F -0.13 -2.70 16.82 44.97 0.76 -1.95 16 27 H 0.06 1.96 6.96 -2.39 -0.02 1.95 16 28 H 0.09 1.85 7.86 -2.39 -0.02 1.83 16 29 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.33 15.33 7.44 -89.69 -0.67 14.67 16 31 H 0.06 3.22 6.22 -2.39 -0.01 3.21 16 32 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.43 8.65 8.16 -92.71 -0.76 7.90 16 36 H 0.14 4.49 5.79 -2.91 -0.02 4.47 16 37 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -62.67 337.76 2.25 -60.43 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -0.30 Total: 25.29 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 4.01 Total: -6.02 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -4.13 Total: -100.55 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.04 Total: -20.82 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.76 Total: -1.95 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -62.67 2.25 -60.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.204 kcal (2) G-P(sol) polarization free energy of solvation -62.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds