Wall clock time and date at job start Tue Mar 31 2020 10:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47238 * 2 1 4 4 C 1.50699 * 109.46986 * 120.00078 * 2 1 3 5 5 H 1.08003 * 119.99942 * 120.00031 * 4 2 1 6 6 C 1.37880 * 119.99836 * 300.26918 * 4 2 1 7 7 N 1.31508 * 120.00391 * 359.73501 * 6 4 2 8 8 Si 1.86809 * 119.99733 * 179.72544 * 6 4 2 9 9 H 1.48502 * 109.46807 * 90.00426 * 8 6 4 10 10 H 1.48505 * 109.46853 * 210.00309 * 8 6 4 11 11 H 1.48496 * 109.47016 * 330.00658 * 8 6 4 12 12 N 1.46899 * 109.47071 * 239.99941 * 2 1 3 13 13 C 1.46897 * 111.00126 * 84.99741 * 12 2 1 14 14 H 1.09005 * 109.47085 * 325.00682 * 13 12 2 15 15 C 1.53004 * 109.47003 * 85.00218 * 13 12 2 16 16 C 1.50693 * 109.47322 * 205.00294 * 13 12 2 17 17 O 1.21286 * 120.00382 * 359.97438 * 16 13 12 18 18 N 1.34783 * 120.00136 * 180.02562 * 16 13 12 19 19 C 1.40041 * 119.99897 * 174.46546 * 18 16 13 20 20 C 1.38795 * 120.07110 * 335.17783 * 19 18 16 21 21 C 1.38257 * 119.93751 * 179.74465 * 20 19 18 22 22 Cl 1.73601 * 119.95442 * 180.27857 * 21 20 19 23 23 C 1.38392 * 120.08478 * 0.51519 * 21 20 19 24 24 C 1.38254 * 120.14413 * 359.76623 * 23 21 20 25 25 C 1.38309 * 120.06003 * 359.97216 * 24 23 21 26 26 F 1.35095 * 120.04381 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.46686 * 300.00293 * 1 2 3 28 28 H 1.08996 * 109.47118 * 59.99702 * 1 2 3 29 29 H 1.08994 * 109.46911 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00624 * 179.97438 * 7 6 4 31 31 H 1.00900 * 110.99625 * 321.04654 * 12 2 1 32 32 H 1.09001 * 109.47210 * 180.02562 * 15 13 12 33 33 H 1.09003 * 109.46766 * 300.00268 * 15 13 12 34 34 H 1.08996 * 109.46944 * 59.99737 * 15 13 12 35 35 H 0.96995 * 119.99742 * 354.45280 * 18 16 13 36 36 H 1.07993 * 120.03148 * 0.02562 * 20 19 18 37 37 H 1.08005 * 119.92652 * 179.74224 * 23 21 20 38 38 H 1.08008 * 119.96951 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6947 -0.2426 2.4827 7 7 0.9385 0.8266 2.6034 8 14 2.3110 -1.1278 4.0080 9 1 3.6178 -0.5545 4.4188 10 1 1.3286 -0.9595 5.1088 11 1 2.4765 -2.5728 3.7087 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3469 14 1 1.2576 0.9329 -2.2906 15 6 3.4111 0.9808 -2.3224 16 6 1.9785 -0.5677 -3.6258 17 8 1.8640 -1.7745 -3.5855 18 7 2.0139 0.0665 -4.8146 19 6 2.0343 -0.6742 -6.0029 20 6 2.5245 -1.9727 -6.0048 21 6 2.5385 -2.7032 -7.1785 22 17 3.1449 -4.3299 -7.1799 23 6 2.0741 -2.1377 -8.3532 24 6 1.5904 -0.8426 -8.3565 25 6 1.5687 -0.1082 -7.1847 26 9 1.0964 1.1575 -7.1883 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 0.7006 1.1555 3.4844 31 1 1.4496 -1.4979 -1.4100 32 1 3.4575 1.6601 -3.1736 33 1 3.4863 1.5524 -1.3973 34 1 4.2359 0.2705 -2.3786 35 1 2.0251 1.0358 -4.8470 36 1 2.8906 -2.4135 -5.0895 37 1 2.0900 -2.7093 -9.2695 38 1 1.2291 -0.4039 -9.2749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864594.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:57 Heat of formation + Delta-G solvation = -56.612654 kcal Electronic energy + Delta-G solvation = -23471.425820 eV Core-core repulsion = 19675.355083 eV Total energy + Delta-G solvation = -3796.070738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.24315 -40.76859 -38.87239 -36.75315 -36.12172 -34.97232 -33.07152 -31.04503 -30.61227 -29.47622 -27.08650 -25.21750 -24.56170 -23.37786 -22.42312 -20.48358 -19.73173 -18.61957 -17.56734 -17.38797 -16.62311 -16.16674 -15.88882 -15.61499 -15.39830 -14.73043 -14.65752 -14.30839 -13.93516 -13.62651 -13.46765 -12.91219 -12.78712 -12.72884 -12.19494 -11.97752 -11.89181 -11.78302 -11.58222 -11.39662 -11.23037 -10.94541 -10.79108 -10.70252 -10.57256 -10.14700 -10.00254 -9.62901 -9.06668 -9.00960 -8.40818 -8.38045 -7.39036 -6.01398 -4.04140 0.59150 0.78868 1.82130 2.48037 2.74023 3.19469 3.32841 3.39001 3.44275 3.79599 4.29115 4.42278 4.61365 4.66585 4.86511 5.01461 5.04520 5.30688 5.34712 5.44050 5.56063 5.63178 5.69358 5.90509 5.92692 5.96886 6.17005 6.49854 6.54120 6.60830 6.78831 7.01972 7.05283 7.27321 7.70157 7.84428 7.96786 8.20612 8.45678 8.54083 9.03333 9.61267 11.05917 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.003013 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.459395 B = 9290.843731 C =10267.574453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.037 0.963 4 C -0.494 4.494 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.665 5.665 13 C 0.071 3.929 14 H 0.067 0.933 15 C -0.133 4.133 16 C 0.517 3.483 17 O -0.502 6.502 18 N -0.671 5.671 19 C 0.144 3.856 20 C -0.102 4.102 21 C -0.022 4.022 22 Cl -0.057 7.057 23 C -0.109 4.109 24 C -0.119 4.119 25 C 0.064 3.936 26 F -0.134 7.134 27 H 0.092 0.908 28 H 0.003 0.997 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.342 0.658 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.417 0.583 36 H 0.169 0.831 37 H 0.143 0.857 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 -0.705 -23.001 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.055 0.945 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.300 5.300 13 C -0.043 4.043 14 H 0.085 0.915 15 C -0.192 4.192 16 C 0.306 3.694 17 O -0.375 6.375 18 N -0.316 5.316 19 C 0.046 3.954 20 C -0.123 4.123 21 C -0.049 4.049 22 Cl -0.028 7.028 23 C -0.129 4.129 24 C -0.138 4.138 25 C 0.042 3.958 26 F -0.112 7.112 27 H 0.110 0.890 28 H 0.022 0.978 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.254 0.746 36 H 0.186 0.814 37 H 0.161 0.839 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.833 -1.469 -22.532 22.757 hybrid contribution -0.845 0.354 0.592 1.091 sum 1.988 -1.115 -21.940 22.058 Atomic orbital electron populations 1.22476 1.00690 0.99489 1.00476 1.19278 0.89568 0.94538 0.86191 0.94508 1.21115 1.30195 1.12595 0.89347 0.91755 1.24937 0.95267 0.95225 0.99053 1.69870 1.37218 1.23308 1.23418 0.86484 0.78384 0.80138 0.82316 1.20741 1.21432 1.19861 1.60925 1.59258 1.08306 1.01480 1.21502 0.99501 0.95232 0.88073 0.91548 1.21760 0.95838 0.99363 1.02193 1.21527 0.74028 0.88911 0.84908 1.90649 1.45843 1.14422 1.86569 1.43662 1.73441 1.10801 1.03736 1.17662 0.99134 0.93063 0.85493 1.21298 0.99103 0.92546 0.99328 1.20764 1.01769 0.87711 0.94692 1.98389 1.86130 1.19501 1.98822 1.20850 0.99794 0.94745 0.97497 1.20879 1.01623 0.94207 0.97123 1.17436 1.02911 0.81342 0.94119 1.91499 1.86203 1.36351 1.97170 0.88986 0.97832 0.95117 0.93036 0.83817 0.93323 0.90414 0.91627 0.74604 0.81355 0.83931 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.92 37.16 0.33 -3.74 16 2 C 0.21 5.15 2.39 -68.86 -0.16 4.98 16 3 H 0.04 0.95 7.11 -51.93 -0.37 0.58 16 4 C -0.49 -13.49 8.84 -34.44 -0.30 -13.80 16 5 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.21 11.31 55.43 0.63 -24.59 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.67 -14.01 5.92 -102.17 -0.60 -14.62 16 13 C 0.07 1.17 2.83 -68.87 -0.20 0.98 16 14 H 0.07 1.08 7.11 -51.93 -0.37 0.71 16 15 C -0.13 -1.94 9.30 37.16 0.35 -1.59 16 16 C 0.52 8.00 6.99 -10.99 -0.08 7.92 16 17 O -0.50 -9.14 12.81 5.55 0.07 -9.07 16 18 N -0.67 -8.19 5.16 -9.81 -0.05 -8.24 16 19 C 0.14 1.74 6.44 -83.60 -0.54 1.21 16 20 C -0.10 -1.30 8.50 -39.37 -0.33 -1.63 16 21 C -0.02 -0.24 6.32 -39.52 -0.25 -0.49 16 22 Cl -0.06 -0.61 28.95 -51.86 -1.50 -2.11 16 23 C -0.11 -0.92 9.82 -39.52 -0.39 -1.31 16 24 C -0.12 -0.98 10.02 -39.55 -0.40 -1.38 16 25 C 0.06 0.67 7.31 -39.25 -0.29 0.38 16 26 F -0.13 -1.40 16.81 2.25 0.04 -1.36 16 27 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 28 H 0.00 0.06 7.43 -51.93 -0.39 -0.33 16 29 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.34 7.43 7.19 -39.29 -0.28 7.15 16 32 H 0.05 0.53 7.70 -51.93 -0.40 0.13 16 33 H 0.08 1.26 7.43 -51.93 -0.39 0.87 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.42 4.05 8.05 -40.82 -0.33 3.72 16 36 H 0.17 2.50 5.79 -52.49 -0.30 2.19 16 37 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 337.16 15.07 5.08 5.08 Total: -1.00 -29.41 337.16 -8.09 -37.49 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.37 Total: 8.07 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.35 Total: -7.05 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.03 Total: -47.44 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.41 -8.09 -37.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864594.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.118 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds