Wall clock time and date at job start Tue Mar 31 2020 10:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47238 * 2 1 4 4 C 1.50699 * 109.46986 * 120.00078 * 2 1 3 5 5 H 1.08003 * 119.99942 * 120.00031 * 4 2 1 6 6 C 1.37880 * 119.99836 * 300.26918 * 4 2 1 7 7 N 1.31508 * 120.00391 * 359.73501 * 6 4 2 8 8 Si 1.86809 * 119.99733 * 179.72544 * 6 4 2 9 9 H 1.48502 * 109.46807 * 90.00426 * 8 6 4 10 10 H 1.48505 * 109.46853 * 210.00309 * 8 6 4 11 11 H 1.48496 * 109.47016 * 330.00658 * 8 6 4 12 12 N 1.46899 * 109.47071 * 239.99941 * 2 1 3 13 13 C 1.46897 * 111.00126 * 84.99741 * 12 2 1 14 14 H 1.09005 * 109.47085 * 325.00682 * 13 12 2 15 15 C 1.53004 * 109.47003 * 85.00218 * 13 12 2 16 16 C 1.50693 * 109.47322 * 205.00294 * 13 12 2 17 17 O 1.21286 * 120.00382 * 359.97438 * 16 13 12 18 18 N 1.34783 * 120.00136 * 180.02562 * 16 13 12 19 19 C 1.40041 * 119.99897 * 174.46546 * 18 16 13 20 20 C 1.38795 * 120.07110 * 335.17783 * 19 18 16 21 21 C 1.38257 * 119.93751 * 179.74465 * 20 19 18 22 22 Cl 1.73601 * 119.95442 * 180.27857 * 21 20 19 23 23 C 1.38392 * 120.08478 * 0.51519 * 21 20 19 24 24 C 1.38254 * 120.14413 * 359.76623 * 23 21 20 25 25 C 1.38309 * 120.06003 * 359.97216 * 24 23 21 26 26 F 1.35095 * 120.04381 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.46686 * 300.00293 * 1 2 3 28 28 H 1.08996 * 109.47118 * 59.99702 * 1 2 3 29 29 H 1.08994 * 109.46911 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00624 * 179.97438 * 7 6 4 31 31 H 1.00900 * 110.99625 * 321.04654 * 12 2 1 32 32 H 1.09001 * 109.47210 * 180.02562 * 15 13 12 33 33 H 1.09003 * 109.46766 * 300.00268 * 15 13 12 34 34 H 1.08996 * 109.46944 * 59.99737 * 15 13 12 35 35 H 0.96995 * 119.99742 * 354.45280 * 18 16 13 36 36 H 1.07993 * 120.03148 * 0.02562 * 20 19 18 37 37 H 1.08005 * 119.92652 * 179.74224 * 23 21 20 38 38 H 1.08008 * 119.96951 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6947 -0.2426 2.4827 7 7 0.9385 0.8266 2.6034 8 14 2.3110 -1.1278 4.0080 9 1 3.6178 -0.5545 4.4188 10 1 1.3286 -0.9595 5.1088 11 1 2.4765 -2.5728 3.7087 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3469 14 1 1.2576 0.9329 -2.2906 15 6 3.4111 0.9808 -2.3224 16 6 1.9785 -0.5677 -3.6258 17 8 1.8640 -1.7745 -3.5855 18 7 2.0139 0.0665 -4.8146 19 6 2.0343 -0.6742 -6.0029 20 6 2.5245 -1.9727 -6.0048 21 6 2.5385 -2.7032 -7.1785 22 17 3.1449 -4.3299 -7.1799 23 6 2.0741 -2.1377 -8.3532 24 6 1.5904 -0.8426 -8.3565 25 6 1.5687 -0.1082 -7.1847 26 9 1.0964 1.1575 -7.1883 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 0.7006 1.1555 3.4844 31 1 1.4496 -1.4979 -1.4100 32 1 3.4575 1.6601 -3.1736 33 1 3.4863 1.5524 -1.3973 34 1 4.2359 0.2705 -2.3786 35 1 2.0251 1.0358 -4.8470 36 1 2.8906 -2.4135 -5.0895 37 1 2.0900 -2.7093 -9.2695 38 1 1.2291 -0.4039 -9.2749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864594.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:57 Heat of formation + Delta-G solvation = -75.081790 kcal Electronic energy + Delta-G solvation = -23472.226702 eV Core-core repulsion = 19675.355083 eV Total energy + Delta-G solvation = -3796.871619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.04652 -41.86777 -39.83567 -37.88915 -37.45578 -36.03171 -34.89666 -32.52492 -31.56586 -30.50841 -28.71855 -27.25911 -25.71979 -24.33288 -23.42547 -22.04873 -21.13658 -19.64674 -18.75566 -18.38821 -17.95371 -17.40071 -16.84467 -16.80734 -16.67506 -16.46725 -15.84399 -15.38240 -15.08766 -14.67893 -14.60079 -14.39073 -14.19046 -13.72351 -13.58615 -13.39706 -13.22589 -12.97946 -12.89731 -12.82252 -12.68052 -12.54722 -12.32505 -12.11114 -12.05207 -11.91307 -11.60508 -11.09468 -10.83206 -10.47477 -9.88086 -9.29877 -9.08002 -8.10533 -6.20192 -0.22984 -0.02228 1.01069 1.34182 1.43258 1.44163 1.54827 1.69719 2.36535 2.44655 2.98665 3.18548 3.42327 3.49490 3.62912 3.95747 4.01944 4.11208 4.21912 4.23895 4.57225 4.67215 4.76929 4.81525 4.85294 4.87499 4.94812 5.08196 5.09832 5.10451 5.29923 5.37126 5.63945 5.68636 5.79252 6.07494 6.25892 6.58284 6.69912 6.85615 6.92320 7.49136 8.95218 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.003013 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.459395 B = 9290.843731 C =10267.574453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.219 3.781 3 H 0.020 0.980 4 C -0.516 4.516 5 H 0.050 0.950 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.674 5.674 13 C 0.068 3.932 14 H 0.074 0.926 15 C -0.127 4.127 16 C 0.524 3.476 17 O -0.535 6.535 18 N -0.656 5.656 19 C 0.122 3.878 20 C -0.120 4.120 21 C -0.031 4.031 22 Cl -0.061 7.061 23 C -0.094 4.094 24 C -0.105 4.105 25 C 0.065 3.935 26 F -0.133 7.133 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.262 0.738 31 H 0.335 0.665 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.429 0.571 36 H 0.142 0.858 37 H 0.175 0.825 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 -0.255 -25.408 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.111 3.889 3 H 0.038 0.962 4 C -0.554 4.554 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.307 5.307 13 C -0.045 4.045 14 H 0.092 0.908 15 C -0.185 4.185 16 C 0.312 3.688 17 O -0.411 6.411 18 N -0.302 5.302 19 C 0.025 3.975 20 C -0.141 4.141 21 C -0.059 4.059 22 Cl -0.032 7.032 23 C -0.113 4.113 24 C -0.124 4.124 25 C 0.043 3.957 26 F -0.111 7.111 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.268 0.732 36 H 0.159 0.841 37 H 0.192 0.808 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.788 -0.987 -24.980 25.155 hybrid contribution -0.825 0.222 1.195 1.469 sum 1.963 -0.766 -23.786 23.879 Atomic orbital electron populations 1.22299 1.00281 0.99026 1.00364 1.19016 0.89718 0.93383 0.86805 0.96194 1.21396 1.30430 1.12534 0.91083 0.93132 1.25633 0.95404 0.95897 1.01617 1.69972 1.37772 1.24172 1.24038 0.85563 0.78065 0.78947 0.79060 1.20119 1.20840 1.19862 1.60771 1.58803 1.08810 1.02356 1.21568 1.00867 0.94701 0.87394 0.90800 1.21724 0.94277 0.99391 1.03096 1.21148 0.73972 0.88222 0.85422 1.90651 1.47704 1.15669 1.87042 1.43342 1.72507 1.11343 1.03025 1.17758 1.00744 0.93160 0.85805 1.21115 1.00516 0.93298 0.99205 1.20910 1.02293 0.87611 0.95039 1.98387 1.86227 1.19717 1.98831 1.21228 0.97656 0.94870 0.97574 1.21300 0.99897 0.93647 0.97533 1.17558 1.02569 0.81464 0.94087 1.91507 1.86149 1.36318 1.97165 0.91421 0.95452 0.95652 0.92914 0.84516 0.89101 0.92254 0.92475 0.73157 0.84071 0.80781 0.79843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.92 71.98 0.64 -7.05 16 2 C 0.22 10.89 2.39 44.17 0.11 11.00 16 3 H 0.02 1.06 7.11 -2.39 -0.02 1.05 16 4 C -0.52 -28.83 8.84 25.60 0.23 -28.60 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -52.20 11.31 21.45 0.24 -51.96 16 8 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 12 N -0.67 -29.08 5.92 -477.15 -2.82 -31.90 16 13 C 0.07 2.26 2.83 44.17 0.13 2.38 16 14 H 0.07 2.36 7.11 -2.38 -0.02 2.34 16 15 C -0.13 -3.63 9.30 71.98 0.67 -2.96 16 16 C 0.52 16.20 6.99 87.65 0.61 16.82 16 17 O -0.54 -20.07 12.81 -3.05 -0.04 -20.11 16 18 N -0.66 -15.38 5.16 -303.34 -1.57 -16.95 16 19 C 0.12 2.82 6.44 38.16 0.25 3.06 16 20 C -0.12 -3.04 8.50 22.41 0.19 -2.85 16 21 C -0.03 -0.63 6.32 22.31 0.14 -0.49 16 22 Cl -0.06 -1.23 28.95 -2.72 -0.08 -1.31 16 23 C -0.09 -1.27 9.82 22.31 0.22 -1.05 16 24 C -0.10 -1.32 10.02 22.29 0.22 -1.10 16 25 C 0.07 1.19 7.31 22.48 0.16 1.35 16 26 F -0.13 -2.39 16.81 44.97 0.76 -1.64 16 27 H 0.07 3.59 6.06 -2.39 -0.01 3.58 16 28 H 0.03 1.13 7.43 -2.39 -0.02 1.11 16 29 H 0.02 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.34 15.05 7.19 -89.69 -0.64 14.40 16 32 H 0.09 1.79 7.70 -2.39 -0.02 1.77 16 33 H 0.06 1.93 7.43 -2.39 -0.02 1.91 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.43 7.56 8.05 -92.71 -0.75 6.81 16 36 H 0.14 4.38 5.79 -2.91 -0.02 4.37 16 37 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -65.01 337.16 2.26 -62.74 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.27 Total: 23.16 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 4.01 Total: -8.33 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -4.15 Total: -100.80 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.04 Total: -20.11 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.76 Total: -1.64 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -65.01 2.26 -62.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864594.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.338 kcal (2) G-P(sol) polarization free energy of solvation -65.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds