Wall clock time and date at job start Tue Mar 31 2020 10:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47041 * 2 1 4 4 C 1.50703 * 109.46936 * 240.00583 * 2 1 3 5 5 H 1.07998 * 120.00049 * 239.99100 * 4 2 1 6 6 C 1.37876 * 120.00010 * 59.99892 * 4 2 1 7 7 N 1.31512 * 120.00423 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99805 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47106 * 90.00148 * 8 6 4 10 10 H 1.48501 * 109.47177 * 209.99913 * 8 6 4 11 11 H 1.48497 * 109.46948 * 329.99647 * 8 6 4 12 12 N 1.46892 * 109.47183 * 120.00180 * 2 1 3 13 13 C 1.46905 * 111.00110 * 209.45561 * 12 2 1 14 14 H 1.09004 * 109.46861 * 329.27733 * 13 12 2 15 15 C 1.52998 * 109.46660 * 89.26905 * 13 12 2 16 16 C 1.50700 * 109.47473 * 209.27081 * 13 12 2 17 17 O 1.21290 * 119.99433 * 0.02562 * 16 13 12 18 18 N 1.34771 * 119.99908 * 180.02562 * 16 13 12 19 19 C 1.40087 * 119.99907 * 184.09703 * 18 16 13 20 20 C 1.38838 * 120.04864 * 325.53934 * 19 18 16 21 21 C 1.38116 * 119.96325 * 180.23081 * 20 19 18 22 22 C 1.38484 * 120.06801 * 359.76531 * 21 20 19 23 23 F 1.35105 * 119.95018 * 180.02562 * 22 21 20 24 24 C 1.38449 * 120.10205 * 359.97438 * 22 21 20 25 25 C 1.38231 * 120.02986 * 359.97438 * 24 22 21 26 26 Cl 1.73595 * 120.03044 * 179.97438 * 25 24 22 27 27 H 1.08999 * 109.47443 * 64.85456 * 1 2 3 28 28 H 1.08999 * 109.47227 * 184.85109 * 1 2 3 29 29 H 1.08998 * 109.47239 * 304.84811 * 1 2 3 30 30 H 0.96998 * 120.00371 * 180.02562 * 7 6 4 31 31 H 1.00902 * 111.00120 * 85.50982 * 12 2 1 32 32 H 1.09009 * 109.46775 * 175.03425 * 15 13 12 33 33 H 1.08994 * 109.47684 * 295.03447 * 15 13 12 34 34 H 1.09000 * 109.46842 * 55.03722 * 15 13 12 35 35 H 0.96996 * 120.00084 * 4.09219 * 18 16 13 36 36 H 1.07998 * 120.01455 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.96280 * 179.74435 * 21 20 19 38 38 H 1.07994 * 119.98228 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1192 -4.0081 9 1 1.3447 -2.1612 -4.4126 10 1 2.4872 -0.1398 -5.1121 11 1 3.6308 -1.7562 -3.7122 12 7 2.0197 -0.6925 1.1993 13 6 3.3210 -0.1576 1.6217 14 1 3.8713 0.1914 0.7479 15 6 3.1037 1.0094 2.5870 16 6 4.1092 -1.2406 2.3122 17 8 3.6338 -2.3492 2.4395 18 7 5.3423 -0.9774 2.7882 19 6 6.1091 -2.0047 3.3531 20 6 5.4907 -3.0197 4.0707 21 6 6.2490 -4.0291 4.6309 22 6 7.6248 -4.0324 4.4734 23 9 8.3641 -5.0213 5.0219 24 6 8.2438 -3.0246 3.7537 25 6 7.4888 -2.0129 3.1904 26 17 8.2650 -0.7488 2.2886 27 1 -0.3634 0.4367 -0.9302 28 1 -0.3633 -1.0240 0.0869 29 1 -0.3633 0.5872 0.8433 30 1 0.7080 1.1611 -3.4844 31 1 2.0707 -1.6885 1.0463 32 1 4.0665 1.3492 2.9687 33 1 2.6113 1.8281 2.0624 34 1 2.4785 0.6820 3.4177 35 1 5.6988 -0.0766 2.7397 36 1 4.4179 -3.0176 4.1943 37 1 5.7683 -4.8164 5.1926 38 1 9.3168 -3.0293 3.6317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:43 Heat of formation + Delta-G solvation = -60.913036 kcal Electronic energy + Delta-G solvation = -23518.738979 eV Core-core repulsion = 19722.481762 eV Total energy + Delta-G solvation = -3796.257216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.14149 -40.74268 -38.77077 -36.77605 -35.97838 -34.81276 -33.05703 -31.27134 -30.76621 -29.11009 -27.21419 -25.08609 -24.28268 -23.56114 -22.26665 -20.27555 -19.79083 -18.39206 -17.81518 -17.25883 -16.66089 -16.25127 -15.83977 -15.33304 -14.95774 -14.80558 -14.76429 -14.12476 -13.96497 -13.82615 -13.36930 -13.20534 -13.00175 -12.51040 -12.09407 -12.00892 -11.78068 -11.63263 -11.37293 -11.32159 -11.25942 -11.01229 -10.84019 -10.44903 -10.29648 -10.17748 -10.06430 -9.55379 -9.24274 -9.14480 -8.44986 -8.30866 -7.44538 -6.05753 -4.18563 0.64413 0.80028 1.69882 2.59119 2.85345 3.24187 3.24956 3.32041 3.35454 3.99433 4.36038 4.36720 4.57930 4.75122 4.87262 5.06781 5.10407 5.23178 5.34141 5.52570 5.61724 5.72245 5.79391 5.90712 5.97731 6.14340 6.24120 6.50436 6.55824 6.82464 7.12611 7.16766 7.26031 7.42280 7.69953 8.02331 8.06118 8.10438 8.22502 8.57634 8.93547 9.50041 10.95284 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.003419 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.246545 B = 8188.658159 C = 8553.480707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.208 3.792 3 H 0.033 0.967 4 C -0.548 4.548 5 H 0.054 0.946 6 C 0.069 3.931 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.674 5.674 13 C 0.074 3.926 14 H 0.081 0.919 15 C -0.134 4.134 16 C 0.520 3.480 17 O -0.510 6.510 18 N -0.674 5.674 19 C 0.159 3.841 20 C -0.084 4.084 21 C -0.127 4.127 22 C 0.088 3.912 23 F -0.136 7.136 24 C -0.128 4.128 25 C -0.044 4.044 26 Cl -0.051 7.051 27 H 0.084 0.916 28 H 0.025 0.975 29 H 0.013 0.987 30 H 0.262 0.738 31 H 0.346 0.654 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.414 0.586 36 H 0.162 0.838 37 H 0.145 0.855 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.551 -2.736 14.420 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.101 3.899 3 H 0.051 0.949 4 C -0.587 4.587 5 H 0.072 0.928 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.309 5.309 13 C -0.040 4.040 14 H 0.099 0.901 15 C -0.192 4.192 16 C 0.309 3.691 17 O -0.383 6.383 18 N -0.321 5.321 19 C 0.063 3.937 20 C -0.104 4.104 21 C -0.146 4.146 22 C 0.068 3.932 23 F -0.114 7.114 24 C -0.148 4.148 25 C -0.073 4.073 26 Cl -0.022 7.022 27 H 0.102 0.898 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.167 0.833 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.252 0.748 36 H 0.179 0.821 37 H 0.163 0.837 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.774 -2.894 14.674 19.669 hybrid contribution 1.426 -0.484 -1.757 2.315 sum 14.200 -3.378 12.917 19.491 Atomic orbital electron populations 1.21673 0.97419 0.98644 1.00575 1.19242 0.92729 0.93885 0.84074 0.94872 1.21859 1.32078 1.12878 0.91889 0.92816 1.24909 0.94739 0.94787 0.98931 1.69871 1.36198 1.22668 1.23581 0.86646 0.79335 0.79555 0.82797 1.20509 1.21130 1.20057 1.61063 1.20662 1.10005 1.39144 1.21446 0.92452 0.92575 0.97514 0.90127 1.21778 1.00775 0.97403 0.99239 1.21540 0.80070 0.90511 0.76992 1.90647 1.68240 1.23935 1.55460 1.43764 1.16901 1.11331 1.60099 1.17594 0.88361 0.92159 0.95629 1.21246 1.02116 0.92693 0.94338 1.21199 0.91603 1.00376 1.01452 1.17406 0.89250 0.87761 0.98773 1.91516 1.76865 1.59419 1.83630 1.20745 1.01166 0.93379 0.99487 1.20450 0.91260 0.94064 1.01543 1.98392 1.80506 1.50153 1.73109 0.89764 0.95591 0.96776 0.92802 0.83340 0.93359 0.90960 0.91745 0.74802 0.82066 0.83708 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 9.36 37.16 0.35 -2.67 16 2 C 0.21 5.04 2.39 -68.87 -0.16 4.88 16 3 H 0.03 0.85 7.47 -51.93 -0.39 0.46 16 4 C -0.55 -14.62 8.50 -34.44 -0.29 -14.91 16 5 H 0.05 1.46 7.67 -52.49 -0.40 1.05 16 6 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 7 N -0.89 -24.52 11.29 55.43 0.63 -23.90 16 8 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.67 -14.09 6.00 -102.17 -0.61 -14.70 16 13 C 0.07 1.27 2.83 -68.86 -0.19 1.07 16 14 H 0.08 1.48 7.72 -51.93 -0.40 1.08 16 15 C -0.13 -1.87 9.39 37.16 0.35 -1.52 16 16 C 0.52 8.28 7.03 -10.99 -0.08 8.21 16 17 O -0.51 -9.41 12.98 5.55 0.07 -9.33 16 18 N -0.67 -8.50 4.95 -9.82 -0.05 -8.55 16 19 C 0.16 1.97 6.31 -83.61 -0.53 1.44 16 20 C -0.08 -1.01 8.70 -39.40 -0.34 -1.35 16 21 C -0.13 -1.31 10.02 -39.54 -0.40 -1.71 16 22 C 0.09 0.93 7.30 -39.41 -0.29 0.64 16 23 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 24 C -0.13 -1.28 9.80 -39.51 -0.39 -1.67 16 25 C -0.04 -0.48 6.34 -39.33 -0.25 -0.73 16 26 Cl -0.05 -0.52 27.95 -51.86 -1.45 -1.97 16 27 H 0.08 2.22 5.95 -51.93 -0.31 1.91 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.35 7.73 6.88 -39.29 -0.27 7.46 16 32 H 0.05 0.51 7.34 -51.92 -0.38 0.13 16 33 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.41 4.32 7.31 -40.82 -0.30 4.02 16 36 H 0.16 2.12 6.19 -52.49 -0.33 1.79 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -28.61 337.80 -8.05 -36.67 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.43 Total: 8.65 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.32 Total: -6.56 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.04 Total: -47.15 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.45 Total: -1.97 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.61 -8.05 -36.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.246 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds