Wall clock time and date at job start Tue Mar 31 2020 10:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47041 * 2 1 4 4 C 1.50703 * 109.46936 * 240.00583 * 2 1 3 5 5 H 1.07998 * 120.00049 * 239.99100 * 4 2 1 6 6 C 1.37876 * 120.00010 * 59.99892 * 4 2 1 7 7 N 1.31512 * 120.00423 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99805 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47106 * 90.00148 * 8 6 4 10 10 H 1.48501 * 109.47177 * 209.99913 * 8 6 4 11 11 H 1.48497 * 109.46948 * 329.99647 * 8 6 4 12 12 N 1.46892 * 109.47183 * 120.00180 * 2 1 3 13 13 C 1.46905 * 111.00110 * 209.45561 * 12 2 1 14 14 H 1.09004 * 109.46861 * 329.27733 * 13 12 2 15 15 C 1.52998 * 109.46660 * 89.26905 * 13 12 2 16 16 C 1.50700 * 109.47473 * 209.27081 * 13 12 2 17 17 O 1.21290 * 119.99433 * 0.02562 * 16 13 12 18 18 N 1.34771 * 119.99908 * 180.02562 * 16 13 12 19 19 C 1.40087 * 119.99907 * 184.09703 * 18 16 13 20 20 C 1.38838 * 120.04864 * 325.53934 * 19 18 16 21 21 C 1.38116 * 119.96325 * 180.23081 * 20 19 18 22 22 C 1.38484 * 120.06801 * 359.76531 * 21 20 19 23 23 F 1.35105 * 119.95018 * 180.02562 * 22 21 20 24 24 C 1.38449 * 120.10205 * 359.97438 * 22 21 20 25 25 C 1.38231 * 120.02986 * 359.97438 * 24 22 21 26 26 Cl 1.73595 * 120.03044 * 179.97438 * 25 24 22 27 27 H 1.08999 * 109.47443 * 64.85456 * 1 2 3 28 28 H 1.08999 * 109.47227 * 184.85109 * 1 2 3 29 29 H 1.08998 * 109.47239 * 304.84811 * 1 2 3 30 30 H 0.96998 * 120.00371 * 180.02562 * 7 6 4 31 31 H 1.00902 * 111.00120 * 85.50982 * 12 2 1 32 32 H 1.09009 * 109.46775 * 175.03425 * 15 13 12 33 33 H 1.08994 * 109.47684 * 295.03447 * 15 13 12 34 34 H 1.09000 * 109.46842 * 55.03722 * 15 13 12 35 35 H 0.96996 * 120.00084 * 4.09219 * 18 16 13 36 36 H 1.07998 * 120.01455 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.96280 * 179.74435 * 21 20 19 38 38 H 1.07994 * 119.98228 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1192 -4.0081 9 1 1.3447 -2.1612 -4.4126 10 1 2.4872 -0.1398 -5.1121 11 1 3.6308 -1.7562 -3.7122 12 7 2.0197 -0.6925 1.1993 13 6 3.3210 -0.1576 1.6217 14 1 3.8713 0.1914 0.7479 15 6 3.1037 1.0094 2.5870 16 6 4.1092 -1.2406 2.3122 17 8 3.6338 -2.3492 2.4395 18 7 5.3423 -0.9774 2.7882 19 6 6.1091 -2.0047 3.3531 20 6 5.4907 -3.0197 4.0707 21 6 6.2490 -4.0291 4.6309 22 6 7.6248 -4.0324 4.4734 23 9 8.3641 -5.0213 5.0219 24 6 8.2438 -3.0246 3.7537 25 6 7.4888 -2.0129 3.1904 26 17 8.2650 -0.7488 2.2886 27 1 -0.3634 0.4367 -0.9302 28 1 -0.3633 -1.0240 0.0869 29 1 -0.3633 0.5872 0.8433 30 1 0.7080 1.1611 -3.4844 31 1 2.0707 -1.6885 1.0463 32 1 4.0665 1.3492 2.9687 33 1 2.6113 1.8281 2.0624 34 1 2.4785 0.6820 3.4177 35 1 5.6988 -0.0766 2.7397 36 1 4.4179 -3.0176 4.1943 37 1 5.7683 -4.8164 5.1926 38 1 9.3168 -3.0293 3.6317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:42 Heat of formation + Delta-G solvation = -78.003302 kcal Electronic energy + Delta-G solvation = -23519.480068 eV Core-core repulsion = 19722.481762 eV Total energy + Delta-G solvation = -3796.998306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.98042 -41.86256 -39.83157 -37.72486 -37.53495 -35.94017 -34.85631 -32.45516 -32.10459 -30.19824 -28.79097 -27.15896 -25.45172 -24.47773 -23.33710 -21.96504 -21.14756 -19.44700 -18.87481 -18.60840 -18.10479 -17.44060 -16.75045 -16.68756 -16.59681 -16.08177 -15.88264 -15.37116 -15.06110 -14.86462 -14.63252 -14.41757 -14.15673 -14.01625 -13.68058 -13.33013 -13.12532 -12.96726 -12.80497 -12.66718 -12.54801 -12.40114 -12.22961 -12.21594 -12.04374 -11.94139 -11.46240 -11.13208 -10.85990 -10.51543 -10.10614 -9.29751 -9.16225 -8.10039 -6.30960 -0.24519 -0.06158 0.84137 1.36710 1.38013 1.39454 1.47507 1.76649 2.34015 2.38561 3.11820 3.14602 3.48521 3.54387 3.58659 3.85062 4.03210 4.15208 4.21710 4.39502 4.48528 4.76603 4.79064 4.87687 4.90596 4.98511 5.02296 5.17442 5.20189 5.25583 5.37026 5.45301 5.63545 5.64528 6.03815 6.11908 6.12484 6.32941 6.70829 6.90267 6.94954 7.40809 8.88153 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.003419 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.246545 B = 8188.658159 C = 8553.480707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.215 3.785 3 H 0.017 0.983 4 C -0.562 4.562 5 H 0.043 0.957 6 C 0.027 3.973 7 N -0.907 5.907 8 Si 0.947 3.053 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.276 1.276 12 N -0.672 5.672 13 C 0.070 3.930 14 H 0.068 0.932 15 C -0.126 4.126 16 C 0.525 3.475 17 O -0.539 6.539 18 N -0.659 5.659 19 C 0.140 3.860 20 C -0.094 4.094 21 C -0.122 4.122 22 C 0.089 3.911 23 F -0.135 7.135 24 C -0.122 4.122 25 C -0.044 4.044 26 Cl -0.044 7.044 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.336 0.664 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.425 0.575 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.238 -3.048 15.066 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 H 0.035 0.965 4 C -0.601 4.601 5 H 0.061 0.939 6 C -0.174 4.174 7 N -0.546 5.546 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.201 1.201 12 N -0.305 5.305 13 C -0.044 4.044 14 H 0.086 0.914 15 C -0.184 4.184 16 C 0.314 3.686 17 O -0.415 6.415 18 N -0.306 5.306 19 C 0.044 3.956 20 C -0.114 4.114 21 C -0.141 4.141 22 C 0.069 3.931 23 F -0.113 7.113 24 C -0.141 4.141 25 C -0.073 4.073 26 Cl -0.015 7.015 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.264 0.736 36 H 0.166 0.834 37 H 0.182 0.818 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 14.498 -3.183 15.344 21.348 hybrid contribution 0.983 -0.407 -1.893 2.171 sum 15.481 -3.589 13.451 20.820 Atomic orbital electron populations 1.21544 0.97534 0.98432 1.00022 1.19024 0.92672 0.92952 0.84658 0.96538 1.22089 1.32078 1.12719 0.93197 0.93863 1.25570 0.94955 0.95455 1.01434 1.69969 1.36820 1.23561 1.24225 0.85742 0.78647 0.78584 0.79761 1.20287 1.20397 1.20066 1.60999 1.23209 1.09134 1.37164 1.21531 0.90934 0.93923 0.97976 0.91434 1.21743 1.02904 0.95571 0.98218 1.21173 0.80884 0.89548 0.76982 1.90640 1.69184 1.24768 1.56863 1.43458 1.15761 1.12142 1.59228 1.17722 0.88901 0.92379 0.96567 1.21184 1.01707 0.93377 0.95140 1.21365 0.91670 1.00192 1.00875 1.17470 0.89275 0.87773 0.98597 1.91524 1.76808 1.59400 1.83599 1.20970 1.02207 0.92543 0.98430 1.20460 0.90775 0.94520 1.01586 1.98397 1.80261 1.49862 1.72949 0.91989 0.95898 0.95175 0.92644 0.84439 0.89538 0.92007 0.91661 0.73552 0.83368 0.81766 0.81317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 9.36 71.98 0.67 -5.04 16 2 C 0.22 10.59 2.39 44.17 0.11 10.70 16 3 H 0.02 0.87 7.47 -2.39 -0.02 0.85 16 4 C -0.56 -30.35 8.50 25.60 0.22 -30.14 16 5 H 0.04 2.38 7.67 -2.91 -0.02 2.36 16 6 C 0.03 1.44 5.29 84.65 0.45 1.88 16 7 N -0.91 -50.60 11.29 21.45 0.24 -50.36 16 8 Si 0.95 43.18 29.54 68.60 2.03 45.20 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.67 -28.41 6.00 -477.16 -2.86 -31.27 16 13 C 0.07 2.39 2.83 44.17 0.12 2.52 16 14 H 0.07 2.51 7.72 -2.39 -0.02 2.49 16 15 C -0.13 -3.38 9.39 71.98 0.68 -2.71 16 16 C 0.53 16.56 7.03 87.66 0.62 17.18 16 17 O -0.54 -20.02 12.98 -3.06 -0.04 -20.06 16 18 N -0.66 -15.90 4.95 -303.36 -1.50 -17.40 16 19 C 0.14 3.29 6.31 38.13 0.24 3.53 16 20 C -0.09 -2.18 8.70 22.38 0.19 -1.99 16 21 C -0.12 -2.32 10.02 22.30 0.22 -2.10 16 22 C 0.09 1.67 7.30 22.38 0.16 1.83 16 23 F -0.13 -2.56 17.27 44.97 0.78 -1.78 16 24 C -0.12 -2.16 9.80 22.32 0.22 -1.94 16 25 C -0.04 -0.89 6.34 22.43 0.14 -0.75 16 26 Cl -0.04 -0.82 27.95 -2.72 -0.08 -0.89 16 27 H 0.06 3.30 5.95 -2.39 -0.01 3.29 16 28 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.34 15.32 6.88 -89.69 -0.62 14.70 16 32 H 0.09 1.63 7.34 -2.38 -0.02 1.61 16 33 H 0.06 1.80 7.87 -2.39 -0.02 1.78 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.42 8.14 7.31 -92.71 -0.68 7.47 16 36 H 0.15 3.89 6.19 -2.91 -0.02 3.87 16 37 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -60.87 337.80 2.43 -58.44 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.18 Total: 25.14 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 4.04 Total: -7.01 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -4.12 Total: -99.03 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.04 Total: -20.06 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.89 kcal Total: -60.87 2.43 -58.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.566 kcal (2) G-P(sol) polarization free energy of solvation -60.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds