Wall clock time and date at job start Tue Mar 31 2020 10:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46827 * 2 1 4 4 C 1.50700 * 109.47231 * 240.00495 * 2 1 3 5 5 H 1.07998 * 120.00151 * 239.99925 * 4 2 1 6 6 C 1.37878 * 119.99894 * 59.99427 * 4 2 1 7 7 N 1.31513 * 120.00360 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00145 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47107 * 59.99623 * 8 6 4 10 10 H 1.48494 * 109.47269 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.46813 * 300.00151 * 8 6 4 12 12 N 1.46901 * 109.47663 * 120.00177 * 2 1 3 13 13 C 1.46900 * 111.00024 * 275.00290 * 12 2 1 14 14 H 1.08996 * 109.47047 * 34.99705 * 13 12 2 15 15 C 1.52998 * 109.46880 * 274.99743 * 13 12 2 16 16 C 1.50701 * 109.46977 * 154.99843 * 13 12 2 17 17 O 1.21296 * 120.00108 * 359.97438 * 16 13 12 18 18 N 1.34776 * 119.99916 * 179.97438 * 16 13 12 19 19 C 1.40078 * 119.99707 * 185.52443 * 18 16 13 20 20 C 1.38830 * 120.05145 * 24.83556 * 19 18 16 21 21 C 1.38117 * 119.96882 * 180.22609 * 20 19 18 22 22 C 1.38498 * 120.06534 * 359.76557 * 21 20 19 23 23 F 1.35094 * 119.94956 * 179.97438 * 22 21 20 24 24 C 1.38450 * 120.09632 * 359.97438 * 22 21 20 25 25 C 1.38226 * 120.03617 * 359.97438 * 24 22 21 26 26 Cl 1.73597 * 120.03649 * 179.97438 * 25 24 22 27 27 H 1.09006 * 109.46827 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46771 * 299.99079 * 1 2 3 29 29 H 1.08991 * 109.47280 * 59.99655 * 1 2 3 30 30 H 0.96996 * 120.00571 * 179.97438 * 7 6 4 31 31 H 1.00900 * 110.99864 * 151.04644 * 12 2 1 32 32 H 1.08997 * 109.47641 * 60.00166 * 15 13 12 33 33 H 1.09000 * 109.46917 * 180.02562 * 15 13 12 34 34 H 1.09001 * 109.46821 * 299.99881 * 15 13 12 35 35 H 0.96997 * 119.99981 * 5.53608 * 18 16 13 36 36 H 1.07997 * 120.01559 * 359.97438 * 20 19 18 37 37 H 1.07996 * 119.96945 * 179.74361 * 21 20 19 38 38 H 1.07995 * 119.98089 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1200 -4.0081 9 1 1.8259 -2.5199 -4.0079 10 1 1.8268 -0.4195 -5.2205 11 1 3.8064 -1.1205 -4.0083 12 7 2.0198 -0.6925 1.1994 13 6 2.0826 0.2225 2.3469 14 1 1.2577 0.9328 2.2907 15 6 3.4112 0.9808 2.3223 16 6 1.9788 -0.5678 3.6258 17 8 1.8634 -1.7746 3.5854 18 7 2.0143 0.0663 4.8146 19 6 2.0346 -0.6746 6.0032 20 6 2.5252 -1.9734 6.0046 21 6 2.5402 -2.7040 7.1766 22 6 2.0706 -2.1406 8.3514 23 9 2.0858 -2.8576 9.4963 24 6 1.5857 -0.8438 8.3542 25 6 1.5698 -0.1086 7.1839 26 17 0.9612 1.5172 7.1873 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 0.7093 1.1620 -3.4843 31 1 2.9175 -1.1205 1.0286 32 1 3.4863 1.5525 1.3973 33 1 3.4580 1.6595 3.1740 34 1 4.2360 0.2705 2.3785 35 1 2.0255 1.0356 4.8470 36 1 2.8913 -2.4135 5.0888 37 1 2.9180 -3.7157 7.1768 38 1 1.2204 -0.4063 9.2715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:50 Heat of formation + Delta-G solvation = -56.830135 kcal Electronic energy + Delta-G solvation = -23340.314080 eV Core-core repulsion = 19544.233912 eV Total energy + Delta-G solvation = -3796.080168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.11969 -40.73324 -38.70957 -36.81070 -36.19934 -34.76088 -33.13871 -31.25661 -30.66961 -29.12793 -27.03745 -25.30812 -24.38749 -23.62825 -22.39867 -20.37389 -19.68530 -18.38619 -17.82565 -17.31001 -16.61913 -16.03057 -15.80977 -15.33816 -15.04001 -14.80181 -14.49070 -14.04468 -14.00459 -13.78337 -13.50936 -13.34444 -13.18121 -12.53507 -12.43811 -12.16643 -11.79921 -11.66513 -11.54713 -11.41104 -11.08342 -10.91151 -10.79116 -10.53464 -10.48498 -10.18765 -10.08675 -9.54513 -9.23035 -8.92968 -8.52921 -8.20801 -7.39768 -6.08598 -4.14957 0.66265 0.81526 1.67451 2.63277 2.83770 3.28498 3.28765 3.33342 3.36736 4.01661 4.34701 4.36032 4.57067 4.76003 4.88289 5.05092 5.10624 5.23390 5.31072 5.34221 5.44521 5.63496 5.77057 5.82104 5.96213 5.99600 6.15601 6.27886 6.58197 6.76787 7.04983 7.10468 7.22552 7.40798 7.71919 7.79855 8.17325 8.19035 8.26720 8.54506 8.93921 9.51228 10.97802 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.002845 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.330808 B = 9838.138126 C =10515.684948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.664 5.664 13 C 0.072 3.928 14 H 0.103 0.897 15 C -0.177 4.177 16 C 0.520 3.480 17 O -0.490 6.490 18 N -0.676 5.676 19 C 0.168 3.832 20 C -0.096 4.096 21 C -0.122 4.122 22 C 0.081 3.919 23 F -0.137 7.137 24 C -0.123 4.123 25 C -0.053 4.053 26 Cl -0.054 7.054 27 H 0.034 0.966 28 H 0.002 0.998 29 H 0.082 0.918 30 H 0.262 0.738 31 H 0.340 0.660 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.412 0.588 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 1.290 20.814 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.296 5.296 13 C -0.043 4.043 14 H 0.120 0.880 15 C -0.236 4.236 16 C 0.308 3.692 17 O -0.361 6.361 18 N -0.322 5.322 19 C 0.071 3.929 20 C -0.117 4.117 21 C -0.141 4.141 22 C 0.061 3.939 23 F -0.115 7.115 24 C -0.143 4.143 25 C -0.083 4.083 26 Cl -0.025 7.025 27 H 0.053 0.947 28 H 0.021 0.979 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.159 0.841 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.250 0.750 36 H 0.184 0.816 37 H 0.163 0.837 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.703 0.419 20.685 20.865 hybrid contribution 0.866 0.704 -0.737 1.337 sum 3.569 1.123 19.947 20.295 Atomic orbital electron populations 1.21765 0.97807 0.99672 0.99292 1.19157 0.92593 0.92415 0.85038 0.97692 1.21182 1.31717 1.12662 0.90261 0.92107 1.24897 0.94955 0.94965 0.99043 1.69872 1.36473 1.22819 1.23707 0.86561 0.79063 0.79859 0.81936 1.20125 1.21308 1.20297 1.60437 1.33044 1.31348 1.04752 1.21425 0.98772 0.93982 0.90130 0.87950 1.22480 0.97220 1.00778 1.03119 1.21496 0.74398 0.89000 0.84329 1.90632 1.44581 1.14414 1.86496 1.43935 1.73615 1.10716 1.03930 1.17635 0.97256 0.92868 0.85165 1.21372 0.98306 0.92380 0.99608 1.21216 1.00635 1.01489 0.90779 1.17392 1.03830 0.90125 0.82574 1.91508 1.94653 1.77446 1.47923 1.20713 1.02359 0.93028 0.98212 1.20312 1.05315 0.88573 0.94081 1.98380 1.86180 1.19345 1.98627 0.94723 0.97885 0.89895 0.92793 0.84145 0.90400 0.92697 0.92091 0.75044 0.81562 0.83750 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.18 37.16 0.34 -2.74 16 2 C 0.21 5.15 2.41 -68.86 -0.17 4.99 16 3 H 0.01 0.14 7.11 -51.93 -0.37 -0.23 16 4 C -0.52 -13.80 8.59 -34.44 -0.30 -14.10 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.66 -13.62 5.54 -102.17 -0.57 -14.19 16 13 C 0.07 1.15 2.81 -68.86 -0.19 0.96 16 14 H 0.10 1.65 7.11 -51.93 -0.37 1.28 16 15 C -0.18 -2.35 9.05 37.16 0.34 -2.02 16 16 C 0.52 7.97 7.03 -10.99 -0.08 7.89 16 17 O -0.49 -9.01 13.60 5.54 0.08 -8.94 16 18 N -0.68 -8.14 5.05 -9.82 -0.05 -8.19 16 19 C 0.17 2.01 6.43 -83.61 -0.54 1.48 16 20 C -0.10 -1.16 8.72 -39.41 -0.34 -1.50 16 21 C -0.12 -1.26 10.02 -39.53 -0.40 -1.65 16 22 C 0.08 0.84 7.30 -39.41 -0.29 0.55 16 23 F -0.14 -1.44 17.26 2.25 0.04 -1.40 16 24 C -0.12 -1.19 9.80 -39.51 -0.39 -1.58 16 25 C -0.05 -0.56 6.34 -39.33 -0.25 -0.81 16 26 Cl -0.05 -0.51 27.78 -51.86 -1.44 -1.95 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.00 0.05 7.43 -51.93 -0.39 -0.34 16 29 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.34 6.91 7.96 -39.29 -0.31 6.60 16 32 H 0.08 1.16 7.43 -51.93 -0.39 0.77 16 33 H 0.05 0.56 7.70 -51.93 -0.40 0.16 16 34 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.41 4.08 7.35 -40.82 -0.30 3.78 16 36 H 0.17 2.23 5.79 -52.49 -0.30 1.93 16 37 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -28.98 336.64 -7.98 -36.96 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.37 Total: 7.74 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -2.35 Total: -6.93 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.01 Total: -46.39 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.44 Total: -1.95 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.98 -7.98 -36.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.871 kcal (2) G-P(sol) polarization free energy of solvation -28.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds