Wall clock time and date at job start Tue Mar 31 2020 10:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46827 * 2 1 4 4 C 1.50700 * 109.47231 * 240.00495 * 2 1 3 5 5 H 1.07998 * 120.00151 * 239.99925 * 4 2 1 6 6 C 1.37878 * 119.99894 * 59.99427 * 4 2 1 7 7 N 1.31513 * 120.00360 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00145 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47107 * 59.99623 * 8 6 4 10 10 H 1.48494 * 109.47269 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.46813 * 300.00151 * 8 6 4 12 12 N 1.46901 * 109.47663 * 120.00177 * 2 1 3 13 13 C 1.46900 * 111.00024 * 275.00290 * 12 2 1 14 14 H 1.08996 * 109.47047 * 34.99705 * 13 12 2 15 15 C 1.52998 * 109.46880 * 274.99743 * 13 12 2 16 16 C 1.50701 * 109.46977 * 154.99843 * 13 12 2 17 17 O 1.21296 * 120.00108 * 359.97438 * 16 13 12 18 18 N 1.34776 * 119.99916 * 179.97438 * 16 13 12 19 19 C 1.40078 * 119.99707 * 185.52443 * 18 16 13 20 20 C 1.38830 * 120.05145 * 24.83556 * 19 18 16 21 21 C 1.38117 * 119.96882 * 180.22609 * 20 19 18 22 22 C 1.38498 * 120.06534 * 359.76557 * 21 20 19 23 23 F 1.35094 * 119.94956 * 179.97438 * 22 21 20 24 24 C 1.38450 * 120.09632 * 359.97438 * 22 21 20 25 25 C 1.38226 * 120.03617 * 359.97438 * 24 22 21 26 26 Cl 1.73597 * 120.03649 * 179.97438 * 25 24 22 27 27 H 1.09006 * 109.46827 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46771 * 299.99079 * 1 2 3 29 29 H 1.08991 * 109.47280 * 59.99655 * 1 2 3 30 30 H 0.96996 * 120.00571 * 179.97438 * 7 6 4 31 31 H 1.00900 * 110.99864 * 151.04644 * 12 2 1 32 32 H 1.08997 * 109.47641 * 60.00166 * 15 13 12 33 33 H 1.09000 * 109.46917 * 180.02562 * 15 13 12 34 34 H 1.09001 * 109.46821 * 299.99881 * 15 13 12 35 35 H 0.96997 * 119.99981 * 5.53608 * 18 16 13 36 36 H 1.07997 * 120.01559 * 359.97438 * 20 19 18 37 37 H 1.07996 * 119.96945 * 179.74361 * 21 20 19 38 38 H 1.07995 * 119.98089 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1200 -4.0081 9 1 1.8259 -2.5199 -4.0079 10 1 1.8268 -0.4195 -5.2205 11 1 3.8064 -1.1205 -4.0083 12 7 2.0198 -0.6925 1.1994 13 6 2.0826 0.2225 2.3469 14 1 1.2577 0.9328 2.2907 15 6 3.4112 0.9808 2.3223 16 6 1.9788 -0.5678 3.6258 17 8 1.8634 -1.7746 3.5854 18 7 2.0143 0.0663 4.8146 19 6 2.0346 -0.6746 6.0032 20 6 2.5252 -1.9734 6.0046 21 6 2.5402 -2.7040 7.1766 22 6 2.0706 -2.1406 8.3514 23 9 2.0858 -2.8576 9.4963 24 6 1.5857 -0.8438 8.3542 25 6 1.5698 -0.1086 7.1839 26 17 0.9612 1.5172 7.1873 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 0.7093 1.1620 -3.4843 31 1 2.9175 -1.1205 1.0286 32 1 3.4863 1.5525 1.3973 33 1 3.4580 1.6595 3.1740 34 1 4.2360 0.2705 2.3785 35 1 2.0255 1.0356 4.8470 36 1 2.8913 -2.4135 5.0888 37 1 2.9180 -3.7157 7.1768 38 1 1.2204 -0.4063 9.2715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:49 Heat of formation + Delta-G solvation = -74.378193 kcal Electronic energy + Delta-G solvation = -23341.075021 eV Core-core repulsion = 19544.233912 eV Total energy + Delta-G solvation = -3796.841109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.94581 -41.80493 -39.74659 -37.84254 -37.54852 -35.85092 -34.93739 -32.32863 -32.06266 -30.20134 -28.61399 -27.28190 -25.58818 -24.52806 -23.43115 -21.87312 -21.14617 -19.42894 -18.86430 -18.52949 -17.97552 -17.32363 -16.77331 -16.65041 -16.28973 -16.05147 -15.73909 -15.51500 -14.97677 -14.90367 -14.66945 -14.37814 -14.32540 -14.08754 -13.77494 -13.43520 -13.32672 -12.82386 -12.67483 -12.62721 -12.53569 -12.39790 -12.27922 -12.19435 -12.17188 -11.93351 -11.52364 -10.95218 -10.75520 -10.54315 -10.07508 -9.13479 -9.03911 -8.12751 -6.25420 -0.20003 -0.03060 0.86101 1.43787 1.45764 1.49045 1.52827 1.77887 2.39596 2.43163 3.16566 3.18674 3.47514 3.55760 3.66710 3.87623 4.05609 4.10057 4.14964 4.21692 4.51590 4.69127 4.77909 4.81822 4.83025 4.92973 5.05985 5.07605 5.20106 5.21261 5.24158 5.46301 5.66865 5.68814 5.84793 6.19472 6.24798 6.45222 6.73857 6.96211 7.05328 7.44504 8.92649 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.002845 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.330808 B = 9838.138126 C =10515.684948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.223 3.777 3 H -0.010 1.010 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.674 5.674 13 C 0.069 3.931 14 H 0.103 0.897 15 C -0.167 4.167 16 C 0.527 3.473 17 O -0.526 6.526 18 N -0.660 5.660 19 C 0.151 3.849 20 C -0.108 4.108 21 C -0.119 4.119 22 C 0.081 3.919 23 F -0.136 7.136 24 C -0.117 4.117 25 C -0.051 4.051 26 Cl -0.042 7.042 27 H 0.019 0.981 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.263 0.737 31 H 0.338 0.662 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.423 0.577 36 H 0.151 0.849 37 H 0.161 0.839 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 1.614 22.382 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 H 0.007 0.993 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.305 5.305 13 C -0.045 4.045 14 H 0.121 0.879 15 C -0.226 4.226 16 C 0.315 3.685 17 O -0.400 6.400 18 N -0.307 5.307 19 C 0.054 3.946 20 C -0.129 4.129 21 C -0.138 4.138 22 C 0.061 3.939 23 F -0.115 7.115 24 C -0.136 4.136 25 C -0.080 4.080 26 Cl -0.013 7.013 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.263 0.737 36 H 0.168 0.832 37 H 0.179 0.821 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.175 0.772 22.301 22.539 hybrid contribution 0.707 0.620 -1.082 1.434 sum 3.882 1.392 21.219 21.616 Atomic orbital electron populations 1.21613 0.98172 0.98578 0.99203 1.18897 0.92214 0.91510 0.85884 0.99261 1.21524 1.31800 1.12724 0.91658 0.92573 1.25631 0.95150 0.95640 1.01738 1.69982 1.37266 1.23868 1.24255 0.85615 0.78844 0.78551 0.78621 1.20167 1.20915 1.19453 1.60264 1.33176 1.32392 1.04675 1.21481 1.00435 0.93563 0.89021 0.87882 1.22368 0.95472 1.00923 1.03850 1.21165 0.74112 0.88315 0.84859 1.90632 1.46561 1.15741 1.87035 1.43609 1.72725 1.11182 1.03189 1.17736 0.98460 0.93091 0.85324 1.21270 0.99178 0.92803 0.99619 1.21356 1.00079 1.02124 0.90258 1.17459 1.03629 0.90377 0.82453 1.91514 1.94629 1.77504 1.47860 1.20950 1.01303 0.92641 0.98731 1.20317 1.04868 0.89162 0.93699 1.98388 1.85970 1.18386 1.98594 0.96135 0.95803 0.92083 0.92786 0.84319 0.92043 0.89057 0.91780 0.73727 0.83205 0.82098 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 9.18 71.98 0.66 -5.10 16 2 C 0.22 10.84 2.41 44.17 0.11 10.95 16 3 H -0.01 -0.52 7.11 -2.38 -0.02 -0.53 16 4 C -0.54 -28.98 8.59 25.60 0.22 -28.76 16 5 H 0.06 3.00 7.62 -2.91 -0.02 2.98 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -51.14 11.32 21.45 0.24 -50.90 16 8 Si 0.96 42.87 29.54 68.60 2.03 44.90 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 12 N -0.67 -27.88 5.54 -477.15 -2.64 -30.53 16 13 C 0.07 2.19 2.81 44.17 0.12 2.31 16 14 H 0.10 3.24 7.11 -2.39 -0.02 3.22 16 15 C -0.17 -4.25 9.05 71.98 0.65 -3.60 16 16 C 0.53 15.84 7.03 87.66 0.62 16.45 16 17 O -0.53 -19.43 13.60 -3.08 -0.04 -19.47 16 18 N -0.66 -14.99 5.05 -303.35 -1.53 -16.52 16 19 C 0.15 3.40 6.43 38.13 0.25 3.64 16 20 C -0.11 -2.53 8.72 22.38 0.20 -2.34 16 21 C -0.12 -2.29 10.02 22.30 0.22 -2.07 16 22 C 0.08 1.50 7.30 22.38 0.16 1.67 16 23 F -0.14 -2.58 17.26 44.97 0.78 -1.80 16 24 C -0.12 -1.96 9.80 22.32 0.22 -1.75 16 25 C -0.05 -0.96 6.34 22.44 0.14 -0.82 16 26 Cl -0.04 -0.70 27.78 -2.72 -0.08 -0.77 16 27 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.02 1.02 7.43 -2.39 -0.02 1.00 16 29 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.34 13.99 7.96 -89.69 -0.71 13.27 16 32 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 33 H 0.09 1.63 7.70 -2.39 -0.02 1.62 16 34 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 35 H 0.42 7.48 7.35 -92.71 -0.68 6.80 16 36 H 0.15 4.07 5.79 -2.91 -0.02 4.06 16 37 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -62.09 336.64 2.50 -59.60 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.27 Total: 23.48 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.02 Total: -7.98 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -3.93 Total: -97.95 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.04 Total: -19.47 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.77 kcal Total: -62.09 2.50 -59.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.782 kcal (2) G-P(sol) polarization free energy of solvation -62.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds