Wall clock time and date at job start Tue Mar 31 2020 10:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47075 * 2 1 4 4 N 1.46900 * 109.47313 * 119.99784 * 2 1 3 5 5 C 1.46893 * 111.00249 * 275.00238 * 4 2 1 6 6 C 1.53042 * 109.45977 * 275.02255 * 5 4 2 7 7 C 1.53196 * 109.31353 * 178.59583 * 6 5 4 8 8 N 1.46924 * 108.76022 * 54.66113 * 7 6 5 9 9 C 1.36936 * 120.63257 * 126.35751 * 8 7 6 10 10 H 1.07999 * 120.00206 * 331.86741 * 9 8 7 11 11 C 1.38813 * 120.00084 * 151.86046 * 9 8 7 12 12 N 1.31613 * 120.00153 * 343.06894 * 11 9 8 13 13 Si 1.86802 * 120.00048 * 163.07192 * 11 9 8 14 14 H 1.48503 * 109.47360 * 89.99756 * 13 11 9 15 15 H 1.48499 * 109.47257 * 209.99791 * 13 11 9 16 16 H 1.48505 * 109.46793 * 329.99717 * 13 11 9 17 17 C 1.46923 * 118.74052 * 306.38225 * 8 7 6 18 18 C 1.53039 * 109.46279 * 154.97366 * 5 4 2 19 19 C 1.50704 * 109.47335 * 240.00222 * 2 1 3 20 20 C 1.33350 * 125.19022 * 99.99813 * 19 2 1 21 21 C 1.38464 * 114.92732 * 180.28792 * 20 19 2 22 22 C 1.33505 * 114.88649 * 359.53033 * 21 20 19 23 23 Cl 1.73601 * 125.21094 * 180.19191 * 22 21 20 24 24 S 1.75874 * 125.18494 * 280.04309 * 19 2 1 25 25 H 1.08998 * 109.47231 * 299.99998 * 1 2 3 26 26 H 1.09000 * 109.47287 * 59.99763 * 1 2 3 27 27 H 1.08997 * 109.47094 * 180.02562 * 1 2 3 28 28 H 1.00903 * 110.99480 * 38.95837 * 4 2 1 29 29 H 1.08996 * 109.46402 * 34.99788 * 5 4 2 30 30 H 1.08993 * 109.50308 * 298.56733 * 6 5 4 31 31 H 1.09011 * 109.49360 * 58.66634 * 6 5 4 32 32 H 1.08994 * 109.60324 * 294.87209 * 7 6 5 33 33 H 1.08999 * 109.70018 * 174.50524 * 7 6 5 34 34 H 0.96998 * 120.00511 * 179.97438 * 12 11 9 35 35 H 1.09004 * 109.58535 * 293.82369 * 17 8 7 36 36 H 1.09004 * 109.71037 * 173.46516 * 17 8 7 37 37 H 1.09007 * 109.49239 * 301.33725 * 18 5 4 38 38 H 1.09001 * 109.49946 * 61.42733 * 18 5 4 39 39 H 1.07993 * 122.53453 * 0.02562 * 20 19 2 40 40 H 1.08000 * 122.55836 * 179.73068 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2226 2.3469 6 6 3.4113 0.9814 2.3217 7 6 3.4584 1.9598 3.4996 8 7 3.2123 1.2155 4.7423 9 6 4.0895 1.2982 5.7905 10 1 5.1338 1.5025 5.6060 11 6 3.6364 1.1196 7.0904 12 7 2.3502 1.2035 7.3564 13 14 4.8524 0.7602 8.4622 14 1 5.3132 2.0379 9.0627 15 1 4.1927 -0.0669 9.5043 16 1 6.0179 0.0239 7.9102 17 6 2.0074 0.3803 4.8387 18 6 1.9764 -0.5801 3.6455 19 6 2.0324 -0.7104 -1.2305 20 6 2.4670 -0.1116 -2.3399 21 6 2.8749 -0.9714 -3.3457 22 6 2.7803 -2.2694 -3.0478 23 17 3.2211 -3.5737 -4.1052 24 16 2.1339 -2.4556 -1.4227 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.4496 -1.4979 1.4100 29 1 1.2576 0.9328 2.2905 30 1 4.2361 0.2736 2.4032 31 1 3.4968 1.5344 1.3862 32 1 2.6903 2.7226 3.3724 33 1 4.4393 2.4329 3.5453 34 1 2.0335 1.0783 8.2647 35 1 1.1209 1.0143 4.8205 36 1 2.0293 -0.1908 5.7669 37 1 1.0404 -1.1388 3.6524 38 1 2.8148 -1.2732 3.7144 39 1 2.4944 0.9626 -2.4475 40 1 3.2447 -0.6190 -4.2972 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610812590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:08 Heat of formation + Delta-G solvation = 43.538088 kcal Electronic energy + Delta-G solvation = -21545.198147 eV Core-core repulsion = 18319.683448 eV Total energy + Delta-G solvation = -3225.514699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -38.85344 -37.88450 -36.84613 -35.65098 -32.89031 -31.00663 -29.81439 -28.76914 -27.95848 -24.88283 -24.20352 -22.54516 -21.87636 -21.00251 -19.70427 -19.02183 -17.59425 -16.73019 -16.03433 -15.17824 -14.96369 -14.74595 -14.14377 -13.95751 -13.68546 -13.49734 -13.48487 -13.23954 -12.91136 -12.73546 -12.46067 -12.31711 -11.84378 -11.79929 -11.50085 -11.37489 -11.13089 -10.97688 -10.82856 -10.72737 -10.67588 -10.35738 -10.21732 -9.93266 -9.62217 -9.47876 -8.68789 -8.64886 -8.46458 -8.27817 -6.66376 -5.78662 -3.20392 0.68855 0.98204 1.75168 2.08919 2.46148 3.38084 3.45216 3.48273 4.14813 4.50855 4.62194 4.94368 5.07361 5.14778 5.26194 5.34938 5.42508 5.48520 5.52411 5.60639 5.70879 5.75433 5.86778 5.92889 6.04586 6.12840 6.17719 6.33045 6.46252 6.52331 6.61581 6.64782 6.81834 7.03351 7.25244 7.36192 7.48570 7.64899 7.80707 8.46024 9.22240 9.85829 10.42536 11.30191 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.002700 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.811995 B =10369.718977 C =10664.698177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.148 3.852 3 H 0.100 0.900 4 N -0.682 5.682 5 C 0.098 3.902 6 C -0.117 4.117 7 C 0.145 3.855 8 N -0.591 5.591 9 C -0.250 4.250 10 H 0.065 0.935 11 C 0.001 3.999 12 N -0.905 5.905 13 Si 0.901 3.099 14 H -0.287 1.287 15 H -0.290 1.290 16 H -0.279 1.279 17 C 0.174 3.826 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.146 4.146 21 C -0.113 4.113 22 C -0.167 4.167 23 Cl -0.024 7.024 24 S 0.174 5.826 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.337 0.663 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.014 0.986 33 H 0.054 0.946 34 H 0.253 0.747 35 H 0.016 0.984 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.145 0.855 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -5.664 -21.190 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.036 3.964 3 H 0.118 0.882 4 N -0.313 5.313 5 C -0.010 4.010 6 C -0.157 4.157 7 C 0.018 3.982 8 N -0.314 5.314 9 C -0.380 4.380 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.549 5.549 13 Si 0.731 3.269 14 H -0.214 1.214 15 H -0.216 1.216 16 H -0.204 1.204 17 C 0.048 3.952 18 C -0.181 4.181 19 C -0.254 4.254 20 C -0.176 4.176 21 C -0.146 4.146 22 C -0.310 4.310 23 Cl 0.004 6.996 24 S 0.437 5.563 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.156 0.844 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.163 0.837 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.397 -6.972 -20.354 21.781 hybrid contribution 0.041 0.979 -0.178 0.996 sum -3.356 -5.993 -20.532 21.650 Atomic orbital electron populations 1.22528 0.95787 1.02562 1.02920 1.20071 0.92555 0.97305 0.86461 0.88245 1.60740 1.56610 1.10006 1.03934 1.21487 0.97452 0.93336 0.88749 1.22026 0.96869 0.98751 0.98046 1.20921 0.98563 0.92232 0.86483 1.44037 1.25319 1.50140 1.11914 1.19181 0.89491 1.44427 0.84897 0.91734 1.25034 0.95876 1.01472 0.97309 1.70021 1.12682 1.52968 1.19261 0.86317 0.80660 0.78030 0.81908 1.21422 1.21580 1.20442 1.20723 0.88092 0.91149 0.95242 1.22410 1.00205 0.99468 0.95993 1.24743 1.05173 0.95980 0.99536 1.19871 1.03833 1.01211 0.92669 1.20105 1.02561 0.90555 1.01386 1.25283 1.14267 0.93063 0.98413 1.98353 1.91413 1.46486 1.63346 1.84436 1.61427 1.04397 1.06012 0.91444 0.91731 0.92264 0.84407 0.94238 0.91685 0.93601 0.96815 0.92719 0.93673 0.96622 0.89326 0.93631 0.91753 0.83736 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.13 37.16 0.34 -1.41 16 2 C 0.15 1.67 2.82 -68.86 -0.19 1.47 16 3 H 0.10 1.15 7.09 -51.93 -0.37 0.79 16 4 N -0.68 -9.09 5.82 -100.91 -0.59 -9.67 16 5 C 0.10 1.57 2.27 -67.67 -0.15 1.42 16 6 C -0.12 -2.04 5.57 -26.61 -0.15 -2.19 16 7 C 0.14 3.02 6.52 -3.71 -0.02 2.99 16 8 N -0.59 -14.70 2.99 -172.32 -0.52 -15.21 16 9 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 10 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 11 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 12 N -0.90 -26.11 11.19 55.49 0.62 -25.49 16 13 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 18 C -0.14 -2.59 5.36 -26.61 -0.14 -2.73 16 19 C -0.14 -1.48 5.45 -36.01 -0.20 -1.68 16 20 C -0.15 -1.46 10.04 -41.21 -0.41 -1.88 16 21 C -0.11 -1.12 10.13 -41.15 -0.42 -1.53 16 22 C -0.17 -1.78 7.10 29.08 0.21 -1.57 16 23 Cl -0.02 -0.24 29.29 -51.86 -1.52 -1.76 16 24 S 0.17 1.90 23.07 -107.50 -2.48 -0.58 16 25 H 0.07 0.70 7.43 -51.93 -0.39 0.32 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 28 H 0.34 4.25 8.07 -39.29 -0.32 3.93 16 29 H 0.04 0.64 7.11 -51.93 -0.37 0.27 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.05 0.71 7.41 -51.92 -0.38 0.32 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 1.13 7.93 -51.93 -0.41 0.71 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 37 H 0.05 0.74 8.10 -51.92 -0.42 0.32 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -28.70 347.80 -11.56 -40.27 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.90 Total: 0.70 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -1.39 Total: -10.12 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.48 Total: -50.38 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.48 Total: -0.58 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.52 Total: -1.76 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.70 -11.56 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.804 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds