Wall clock time and date at job start Tue Mar 31 2020 10:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47075 * 2 1 4 4 N 1.46900 * 109.47313 * 119.99784 * 2 1 3 5 5 C 1.46893 * 111.00249 * 275.00238 * 4 2 1 6 6 C 1.53042 * 109.45977 * 275.02255 * 5 4 2 7 7 C 1.53196 * 109.31353 * 178.59583 * 6 5 4 8 8 N 1.46924 * 108.76022 * 54.66113 * 7 6 5 9 9 C 1.36936 * 120.63257 * 126.35751 * 8 7 6 10 10 H 1.07999 * 120.00206 * 331.86741 * 9 8 7 11 11 C 1.38813 * 120.00084 * 151.86046 * 9 8 7 12 12 N 1.31613 * 120.00153 * 343.06894 * 11 9 8 13 13 Si 1.86802 * 120.00048 * 163.07192 * 11 9 8 14 14 H 1.48503 * 109.47360 * 89.99756 * 13 11 9 15 15 H 1.48499 * 109.47257 * 209.99791 * 13 11 9 16 16 H 1.48505 * 109.46793 * 329.99717 * 13 11 9 17 17 C 1.46923 * 118.74052 * 306.38225 * 8 7 6 18 18 C 1.53039 * 109.46279 * 154.97366 * 5 4 2 19 19 C 1.50704 * 109.47335 * 240.00222 * 2 1 3 20 20 C 1.33350 * 125.19022 * 99.99813 * 19 2 1 21 21 C 1.38464 * 114.92732 * 180.28792 * 20 19 2 22 22 C 1.33505 * 114.88649 * 359.53033 * 21 20 19 23 23 Cl 1.73601 * 125.21094 * 180.19191 * 22 21 20 24 24 S 1.75874 * 125.18494 * 280.04309 * 19 2 1 25 25 H 1.08998 * 109.47231 * 299.99998 * 1 2 3 26 26 H 1.09000 * 109.47287 * 59.99763 * 1 2 3 27 27 H 1.08997 * 109.47094 * 180.02562 * 1 2 3 28 28 H 1.00903 * 110.99480 * 38.95837 * 4 2 1 29 29 H 1.08996 * 109.46402 * 34.99788 * 5 4 2 30 30 H 1.08993 * 109.50308 * 298.56733 * 6 5 4 31 31 H 1.09011 * 109.49360 * 58.66634 * 6 5 4 32 32 H 1.08994 * 109.60324 * 294.87209 * 7 6 5 33 33 H 1.08999 * 109.70018 * 174.50524 * 7 6 5 34 34 H 0.96998 * 120.00511 * 179.97438 * 12 11 9 35 35 H 1.09004 * 109.58535 * 293.82369 * 17 8 7 36 36 H 1.09004 * 109.71037 * 173.46516 * 17 8 7 37 37 H 1.09007 * 109.49239 * 301.33725 * 18 5 4 38 38 H 1.09001 * 109.49946 * 61.42733 * 18 5 4 39 39 H 1.07993 * 122.53453 * 0.02562 * 20 19 2 40 40 H 1.08000 * 122.55836 * 179.73068 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2226 2.3469 6 6 3.4113 0.9814 2.3217 7 6 3.4584 1.9598 3.4996 8 7 3.2123 1.2155 4.7423 9 6 4.0895 1.2982 5.7905 10 1 5.1338 1.5025 5.6060 11 6 3.6364 1.1196 7.0904 12 7 2.3502 1.2035 7.3564 13 14 4.8524 0.7602 8.4622 14 1 5.3132 2.0379 9.0627 15 1 4.1927 -0.0669 9.5043 16 1 6.0179 0.0239 7.9102 17 6 2.0074 0.3803 4.8387 18 6 1.9764 -0.5801 3.6455 19 6 2.0324 -0.7104 -1.2305 20 6 2.4670 -0.1116 -2.3399 21 6 2.8749 -0.9714 -3.3457 22 6 2.7803 -2.2694 -3.0478 23 17 3.2211 -3.5737 -4.1052 24 16 2.1339 -2.4556 -1.4227 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.4496 -1.4979 1.4100 29 1 1.2576 0.9328 2.2905 30 1 4.2361 0.2736 2.4032 31 1 3.4968 1.5344 1.3862 32 1 2.6903 2.7226 3.3724 33 1 4.4393 2.4329 3.5453 34 1 2.0335 1.0783 8.2647 35 1 1.1209 1.0143 4.8205 36 1 2.0293 -0.1908 5.7669 37 1 1.0404 -1.1388 3.6524 38 1 2.8148 -1.2732 3.7144 39 1 2.4944 0.9626 -2.4475 40 1 3.2447 -0.6190 -4.2972 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610812590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:07 Heat of formation + Delta-G solvation = 28.095478 kcal Electronic energy + Delta-G solvation = -21545.867789 eV Core-core repulsion = 18319.683448 eV Total energy + Delta-G solvation = -3226.184341 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.99807 -38.94812 -37.75118 -36.89948 -34.53755 -32.59916 -31.46320 -29.99035 -28.95740 -26.54280 -25.22289 -23.98059 -23.34325 -22.22163 -20.86492 -20.25778 -18.81179 -18.28636 -17.03264 -16.76514 -16.18898 -15.89296 -15.67875 -15.30227 -14.90350 -14.83075 -14.70288 -14.31540 -13.98308 -13.89236 -13.79776 -13.48143 -13.13040 -13.02024 -12.78145 -12.65215 -12.52411 -12.39150 -12.27127 -12.06449 -11.96916 -11.86605 -11.73251 -11.55601 -11.28159 -11.11706 -10.52856 -9.54891 -9.45951 -9.29753 -8.67055 -7.87347 -5.31817 -0.10415 0.19572 0.96407 1.30891 1.46482 1.48332 1.58118 1.70283 2.52004 3.08139 3.29936 3.71282 3.74414 3.98283 4.13060 4.19920 4.31498 4.39045 4.45445 4.55504 4.56914 4.70750 4.72666 4.83990 4.90736 4.97293 5.01354 5.07816 5.11992 5.18570 5.26552 5.27871 5.42266 5.44015 5.55174 5.66038 5.75492 6.10329 6.40061 6.42577 7.16217 7.87878 8.38922 9.19191 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.002700 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.811995 B =10369.718977 C =10664.698177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.151 3.849 3 H 0.101 0.899 4 N -0.682 5.682 5 C 0.112 3.888 6 C -0.104 4.104 7 C 0.141 3.859 8 N -0.611 5.611 9 C -0.263 4.263 10 H 0.063 0.937 11 C -0.050 4.050 12 N -0.935 5.935 13 Si 0.965 3.035 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.272 1.272 17 C 0.180 3.820 18 C -0.127 4.127 19 C -0.146 4.146 20 C -0.142 4.142 21 C -0.113 4.113 22 C -0.177 4.177 23 Cl -0.021 7.021 24 S 0.156 5.844 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.343 0.657 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.015 0.985 33 H 0.051 0.949 34 H 0.250 0.750 35 H -0.003 1.003 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.165 0.835 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.435 -5.684 -23.097 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.040 3.960 3 H 0.119 0.881 4 N -0.314 5.314 5 C 0.003 3.997 6 C -0.143 4.143 7 C 0.015 3.985 8 N -0.334 5.334 9 C -0.393 4.393 10 H 0.081 0.919 11 C -0.245 4.245 12 N -0.581 5.581 13 Si 0.793 3.207 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.197 1.197 17 C 0.054 3.946 18 C -0.166 4.166 19 C -0.265 4.265 20 C -0.172 4.172 21 C -0.145 4.145 22 C -0.321 4.321 23 Cl 0.007 6.993 24 S 0.420 5.580 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.163 0.837 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.015 0.985 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.182 0.818 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.137 -6.999 -22.299 23.581 hybrid contribution -0.035 1.014 0.325 1.065 sum -3.173 -5.985 -21.975 22.995 Atomic orbital electron populations 1.22469 0.94640 1.02899 1.03269 1.20078 0.93458 0.97045 0.85464 0.88122 1.60609 1.57483 1.09753 1.03511 1.21187 0.96742 0.93257 0.88558 1.21833 0.97092 0.97901 0.97500 1.21064 0.98332 0.92881 0.86176 1.44313 1.25246 1.51244 1.12632 1.19490 0.90014 1.43815 0.85974 0.91886 1.25766 0.97443 1.01887 0.99441 1.70167 1.14306 1.54249 1.19373 0.85319 0.78682 0.77713 0.78993 1.21084 1.21780 1.19709 1.20528 0.86984 0.91156 0.95917 1.22160 1.00892 0.98332 0.95254 1.24714 1.06185 0.95793 0.99788 1.20139 1.02660 1.02280 0.92154 1.20372 1.01838 0.90187 1.02129 1.25422 1.14693 0.93618 0.98348 1.98353 1.91383 1.46422 1.63112 1.84471 1.61923 1.04916 1.06731 0.92052 0.90386 0.91970 0.83743 0.93929 0.93173 0.90865 0.96723 0.93002 0.94098 0.98467 0.92871 0.91377 0.92941 0.81794 0.81907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.13 71.98 0.66 -2.31 16 2 C 0.15 3.00 2.82 44.17 0.12 3.13 16 3 H 0.10 2.00 7.09 -2.38 -0.02 1.99 16 4 N -0.68 -16.70 5.82 -473.18 -2.75 -19.45 16 5 C 0.11 3.39 2.27 44.94 0.10 3.49 16 6 C -0.10 -3.44 5.57 30.67 0.17 -3.27 16 7 C 0.14 5.82 6.52 86.36 0.56 6.38 16 8 N -0.61 -30.75 2.99 -699.11 -2.09 -32.84 16 9 C -0.26 -14.61 9.58 84.03 0.81 -13.81 16 10 H 0.06 3.44 7.88 -2.91 -0.02 3.42 16 11 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 12 N -0.93 -55.33 11.19 21.65 0.24 -55.09 16 13 Si 0.96 45.14 29.59 68.60 2.03 47.17 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 C 0.18 8.59 5.30 86.36 0.46 9.05 16 18 C -0.13 -4.59 5.36 30.67 0.16 -4.42 16 19 C -0.15 -2.83 5.45 24.58 0.13 -2.70 16 20 C -0.14 -2.43 10.04 21.22 0.21 -2.21 16 21 C -0.11 -1.92 10.13 21.25 0.22 -1.71 16 22 C -0.18 -3.44 7.10 66.75 0.47 -2.97 16 23 Cl -0.02 -0.38 29.29 -2.72 -0.08 -0.46 16 24 S 0.16 3.15 23.07 -56.49 -1.30 1.85 16 25 H 0.06 1.13 7.43 -2.39 -0.02 1.12 16 26 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 28 H 0.34 7.93 8.07 -89.69 -0.72 7.20 16 29 H 0.04 1.30 7.11 -2.39 -0.02 1.28 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 2.05 7.41 -2.38 -0.02 2.03 16 32 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 34 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.05 2.90 6.06 -2.39 -0.01 2.88 16 37 H 0.07 2.14 8.10 -2.38 -0.02 2.12 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -62.07 347.80 0.86 -61.21 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.32 Total: 11.35 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.50 Total: -13.74 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -4.60 Total: -107.38 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.30 Total: 1.85 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -62.07 0.86 -61.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.309 kcal (2) G-P(sol) polarization free energy of solvation -62.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds