Wall clock time and date at job start Tue Mar 31 2020 10:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46985 * 2 1 4 4 N 1.46894 * 109.47554 * 239.99952 * 2 1 3 5 5 C 1.46892 * 111.00388 * 152.65000 * 4 2 1 6 6 C 1.53046 * 109.45955 * 272.77653 * 5 4 2 7 7 C 1.53191 * 109.31358 * 178.59826 * 6 5 4 8 8 N 1.46927 * 108.76600 * 54.65854 * 7 6 5 9 9 C 1.36936 * 120.63726 * 126.36043 * 8 7 6 10 10 H 1.08000 * 119.99616 * 325.24048 * 9 8 7 11 11 C 1.38805 * 120.00277 * 145.23051 * 9 8 7 12 12 N 1.31613 * 120.00233 * 344.83582 * 11 9 8 13 13 Si 1.86807 * 119.99872 * 164.83195 * 11 9 8 14 14 H 1.48499 * 109.46805 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47039 * 120.00438 * 13 11 9 16 16 H 1.48496 * 109.46979 * 240.00341 * 13 11 9 17 17 C 1.46938 * 118.73509 * 306.38269 * 8 7 6 18 18 C 1.53039 * 109.46239 * 152.72220 * 5 4 2 19 19 C 1.50704 * 109.46762 * 119.99522 * 2 1 3 20 20 C 1.33353 * 122.53142 * 80.03035 * 19 2 1 21 21 S 1.75877 * 109.62293 * 179.97438 * 20 19 2 22 22 C 1.75884 * 90.97965 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 125.20815 * 180.02562 * 22 21 20 24 24 C 1.33499 * 109.58211 * 0.26444 * 22 21 20 25 25 H 1.08998 * 109.46806 * 175.34062 * 1 2 3 26 26 H 1.08996 * 109.47499 * 295.34553 * 1 2 3 27 27 H 1.09005 * 109.46922 * 55.34386 * 1 2 3 28 28 H 1.00899 * 110.99929 * 276.60496 * 4 2 1 29 29 H 1.08997 * 109.46247 * 32.74669 * 5 4 2 30 30 H 1.08995 * 109.49761 * 298.56484 * 6 5 4 31 31 H 1.09000 * 109.49327 * 58.66150 * 6 5 4 32 32 H 1.09004 * 109.59916 * 294.87409 * 7 6 5 33 33 H 1.08998 * 109.70512 * 174.50535 * 7 6 5 34 34 H 0.97003 * 120.00241 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.58423 * 293.81592 * 17 8 7 36 36 H 1.08997 * 109.69901 * 173.46710 * 17 8 7 37 37 H 1.09000 * 109.49999 * 301.33768 * 18 5 4 38 38 H 1.09004 * 109.49602 * 61.40226 * 18 5 4 39 39 H 1.08004 * 125.18938 * 359.93312 * 20 19 2 40 40 H 1.08008 * 122.55703 * 179.71959 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 3.3436 -0.1920 -1.5926 6 6 3.1781 1.0245 -2.5064 7 6 4.5603 1.5648 -2.8861 8 7 5.3499 0.4732 -3.4722 9 6 5.9375 0.6185 -4.7006 10 1 5.4452 1.1950 -5.4698 11 6 7.1658 0.0251 -4.9570 12 7 7.9040 -0.4167 -3.9609 13 14 7.7711 -0.1467 -6.7159 14 1 6.7631 0.4252 -7.6443 15 1 9.0557 0.5820 -6.8706 16 1 7.9760 -1.5833 -7.0308 17 6 5.4966 -0.7778 -2.7155 18 6 4.1039 -1.2917 -2.3375 19 6 2.0323 -0.7103 1.2306 20 6 2.0877 -2.0398 1.3188 21 16 2.7239 -2.5014 2.8921 22 6 2.8846 -0.8125 3.3562 23 17 3.4876 -0.2470 4.8828 24 6 2.4671 -0.0321 2.3567 25 1 -0.3633 -1.0243 -0.0835 26 1 -0.3634 0.4399 0.9287 27 1 -0.3633 0.5844 -0.8454 28 1 2.0381 -1.6913 -1.0580 29 1 3.9021 0.0962 -0.7020 30 1 2.6414 0.7313 -3.4087 31 1 2.6162 1.7984 -1.9835 32 1 5.0629 1.9417 -1.9953 33 1 4.4533 2.3696 -3.6134 34 1 8.7623 -0.8317 -4.1401 35 1 6.0756 -0.5918 -1.8109 36 1 6.0062 -1.5207 -3.3291 37 1 4.2010 -2.1664 -1.6945 38 1 3.5581 -1.5632 -3.2411 39 1 1.7872 -2.7281 0.5426 40 1 2.4707 1.0460 2.4206 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615756370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:11 Heat of formation + Delta-G solvation = 43.081904 kcal Electronic energy + Delta-G solvation = -21889.356095 eV Core-core repulsion = 18663.821614 eV Total energy + Delta-G solvation = -3225.534481 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.46865 -37.63396 -36.91213 -34.97167 -32.65645 -30.84683 -29.80364 -28.99339 -28.17169 -24.90172 -24.51365 -22.31005 -21.76066 -20.98935 -19.07536 -18.97469 -18.27143 -16.70131 -16.06969 -15.31071 -14.79371 -14.49411 -14.18179 -13.89173 -13.66401 -13.59672 -13.47849 -13.06947 -12.95573 -12.82039 -12.39777 -12.22961 -11.87735 -11.64779 -11.36720 -11.30623 -11.17522 -10.96168 -10.87278 -10.71673 -10.70807 -10.29742 -10.16593 -9.96051 -9.58917 -9.41143 -8.91179 -8.63272 -8.46172 -8.24601 -6.54645 -5.77333 -3.25965 0.60177 0.90574 1.59780 2.01384 2.36657 3.37706 3.45738 3.48420 4.31902 4.51314 4.68988 4.81565 5.12928 5.30482 5.35655 5.40340 5.46481 5.50279 5.56124 5.69043 5.76972 5.83566 5.95057 5.98664 6.10656 6.17510 6.21721 6.37624 6.52508 6.58069 6.66395 6.68225 6.87524 7.08379 7.33753 7.35185 7.57266 7.63221 7.84301 8.51996 9.24625 9.86320 10.47922 11.30968 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.003222 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.876838 B = 8688.204711 C = 9272.685858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.141 3.859 3 H 0.087 0.913 4 N -0.676 5.676 5 C 0.096 3.904 6 C -0.116 4.116 7 C 0.145 3.855 8 N -0.589 5.589 9 C -0.256 4.256 10 H 0.062 0.938 11 C 0.008 3.992 12 N -0.900 5.900 13 Si 0.900 3.100 14 H -0.276 1.276 15 H -0.290 1.290 16 H -0.289 1.289 17 C 0.179 3.821 18 C -0.141 4.141 19 C -0.115 4.115 20 C -0.204 4.204 21 S 0.145 5.855 22 C -0.149 4.149 23 Cl -0.018 7.018 24 C -0.108 4.108 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.335 0.665 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.013 0.987 33 H 0.054 0.946 34 H 0.253 0.747 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.171 0.829 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 -2.575 15.231 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.028 3.972 3 H 0.105 0.895 4 N -0.307 5.307 5 C -0.012 4.012 6 C -0.156 4.156 7 C 0.018 3.982 8 N -0.312 5.312 9 C -0.386 4.386 10 H 0.080 0.920 11 C -0.191 4.191 12 N -0.543 5.543 13 Si 0.729 3.271 14 H -0.201 1.201 15 H -0.217 1.217 16 H -0.215 1.215 17 C 0.053 3.947 18 C -0.181 4.181 19 C -0.129 4.129 20 C -0.340 4.340 21 S 0.408 5.592 22 C -0.292 4.292 23 Cl 0.011 6.989 24 C -0.141 4.141 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.188 0.812 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.947 -3.582 15.635 21.256 hybrid contribution 0.856 0.772 -0.577 1.289 sum -13.091 -2.811 15.058 20.150 Atomic orbital electron populations 1.21735 0.93483 1.02215 1.01489 1.20412 0.95469 0.97503 0.83820 0.89454 1.60875 1.28217 1.08854 1.32750 1.21479 0.86749 0.96316 0.96689 1.22014 0.98892 0.95774 0.98915 1.20940 0.89841 0.91366 0.96079 1.43957 1.58907 1.09492 1.18885 1.19159 0.98898 1.32044 0.88489 0.92009 1.25210 0.95295 1.01437 0.97156 1.70036 1.11542 1.43322 1.29443 0.86270 0.78450 0.77490 0.84849 1.20123 1.21672 1.21545 1.20603 0.90110 0.89024 0.94987 1.22403 1.00358 0.95974 0.99352 1.19702 1.01817 0.93319 0.98072 1.25462 1.08648 0.99015 1.00889 1.84345 1.62811 1.02697 1.09369 1.25218 1.12002 0.98084 0.93914 1.98367 1.86154 1.88196 1.26208 1.20126 1.00659 1.01646 0.91646 0.92635 0.92716 0.91537 0.84514 0.94353 0.91802 0.93593 0.96881 0.92734 0.93715 0.96476 0.90584 0.93841 0.91865 0.81179 0.83389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.50 37.16 0.35 -0.92 16 2 C 0.14 1.61 2.72 -68.87 -0.19 1.42 16 3 H 0.09 1.06 7.22 -51.93 -0.37 0.69 16 4 N -0.68 -9.03 6.06 -100.92 -0.61 -9.64 16 5 C 0.10 1.60 2.25 -67.67 -0.15 1.45 16 6 C -0.12 -2.06 5.59 -26.61 -0.15 -2.21 16 7 C 0.14 3.09 6.52 -3.71 -0.02 3.07 16 8 N -0.59 -14.90 2.95 -172.31 -0.51 -15.41 16 9 C -0.26 -7.10 9.51 -15.06 -0.14 -7.24 16 10 H 0.06 1.70 7.87 -52.49 -0.41 1.28 16 11 C 0.01 0.24 4.91 -17.44 -0.09 0.15 16 12 N -0.90 -26.37 11.60 55.49 0.64 -25.72 16 13 Si 0.90 21.74 29.58 -169.99 -5.03 16.71 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 C 0.18 4.27 5.26 -3.70 -0.02 4.25 16 18 C -0.14 -2.65 5.34 -26.61 -0.14 -2.79 16 19 C -0.12 -1.28 4.65 -106.24 -0.49 -1.78 16 20 C -0.20 -2.11 10.19 29.03 0.30 -1.82 16 21 S 0.14 1.47 23.34 -107.50 -2.51 -1.04 16 22 C -0.15 -1.65 7.10 29.07 0.21 -1.44 16 23 Cl -0.02 -0.18 29.29 -51.86 -1.52 -1.70 16 24 C -0.11 -1.20 9.90 -41.16 -0.41 -1.61 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.34 4.16 6.23 -39.29 -0.24 3.92 16 29 H 0.04 0.69 7.70 -51.93 -0.40 0.29 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.72 7.62 -51.93 -0.40 0.32 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 2.02 6.54 -51.93 -0.34 1.68 16 37 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.17 1.51 6.98 -52.48 -0.37 1.14 16 40 H 0.15 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -29.16 347.14 -11.14 -40.30 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.88 Total: 0.74 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.95 Total: -9.46 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.48 Total: -50.77 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.51 Total: -1.04 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.52 Total: -1.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.16 -11.14 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615756370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.382 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds