Wall clock time and date at job start Tue Mar 31 2020 10:29:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09000 * 109.46985 * 2 1
4 4 N 1.46894 * 109.47554 * 239.99952 * 2 1 3
5 5 C 1.46892 * 111.00388 * 152.65000 * 4 2 1
6 6 C 1.53046 * 109.45955 * 272.77653 * 5 4 2
7 7 C 1.53191 * 109.31358 * 178.59826 * 6 5 4
8 8 N 1.46927 * 108.76600 * 54.65854 * 7 6 5
9 9 C 1.36936 * 120.63726 * 126.36043 * 8 7 6
10 10 H 1.08000 * 119.99616 * 325.24048 * 9 8 7
11 11 C 1.38805 * 120.00277 * 145.23051 * 9 8 7
12 12 N 1.31613 * 120.00233 * 344.83582 * 11 9 8
13 13 Si 1.86807 * 119.99872 * 164.83195 * 11 9 8
14 14 H 1.48499 * 109.46805 * 0.02562 * 13 11 9
15 15 H 1.48494 * 109.47039 * 120.00438 * 13 11 9
16 16 H 1.48496 * 109.46979 * 240.00341 * 13 11 9
17 17 C 1.46938 * 118.73509 * 306.38269 * 8 7 6
18 18 C 1.53039 * 109.46239 * 152.72220 * 5 4 2
19 19 C 1.50704 * 109.46762 * 119.99522 * 2 1 3
20 20 C 1.33353 * 122.53142 * 80.03035 * 19 2 1
21 21 S 1.75877 * 109.62293 * 179.97438 * 20 19 2
22 22 C 1.75884 * 90.97965 * 359.97438 * 21 20 19
23 23 Cl 1.73602 * 125.20815 * 180.02562 * 22 21 20
24 24 C 1.33499 * 109.58211 * 0.26444 * 22 21 20
25 25 H 1.08998 * 109.46806 * 175.34062 * 1 2 3
26 26 H 1.08996 * 109.47499 * 295.34553 * 1 2 3
27 27 H 1.09005 * 109.46922 * 55.34386 * 1 2 3
28 28 H 1.00899 * 110.99929 * 276.60496 * 4 2 1
29 29 H 1.08997 * 109.46247 * 32.74669 * 5 4 2
30 30 H 1.08995 * 109.49761 * 298.56484 * 6 5 4
31 31 H 1.09000 * 109.49327 * 58.66150 * 6 5 4
32 32 H 1.09004 * 109.59916 * 294.87409 * 7 6 5
33 33 H 1.08998 * 109.70512 * 174.50535 * 7 6 5
34 34 H 0.97003 * 120.00241 * 179.97438 * 12 11 9
35 35 H 1.08997 * 109.58423 * 293.81592 * 17 8 7
36 36 H 1.08997 * 109.69901 * 173.46710 * 17 8 7
37 37 H 1.09000 * 109.49999 * 301.33768 * 18 5 4
38 38 H 1.09004 * 109.49602 * 61.40226 * 18 5 4
39 39 H 1.08004 * 125.18938 * 359.93312 * 20 19 2
40 40 H 1.08008 * 122.55703 * 179.71959 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0197 -0.6925 -1.1993
5 6 3.3436 -0.1920 -1.5926
6 6 3.1781 1.0245 -2.5064
7 6 4.5603 1.5648 -2.8861
8 7 5.3499 0.4732 -3.4722
9 6 5.9375 0.6185 -4.7006
10 1 5.4452 1.1950 -5.4698
11 6 7.1658 0.0251 -4.9570
12 7 7.9040 -0.4167 -3.9609
13 14 7.7711 -0.1467 -6.7159
14 1 6.7631 0.4252 -7.6443
15 1 9.0557 0.5820 -6.8706
16 1 7.9760 -1.5833 -7.0308
17 6 5.4966 -0.7778 -2.7155
18 6 4.1039 -1.2917 -2.3375
19 6 2.0323 -0.7103 1.2306
20 6 2.0877 -2.0398 1.3188
21 16 2.7239 -2.5014 2.8921
22 6 2.8846 -0.8125 3.3562
23 17 3.4876 -0.2470 4.8828
24 6 2.4671 -0.0321 2.3567
25 1 -0.3633 -1.0243 -0.0835
26 1 -0.3634 0.4399 0.9287
27 1 -0.3633 0.5844 -0.8454
28 1 2.0381 -1.6913 -1.0580
29 1 3.9021 0.0962 -0.7020
30 1 2.6414 0.7313 -3.4087
31 1 2.6162 1.7984 -1.9835
32 1 5.0629 1.9417 -1.9953
33 1 4.4533 2.3696 -3.6134
34 1 8.7623 -0.8317 -4.1401
35 1 6.0756 -0.5918 -1.8109
36 1 6.0062 -1.5207 -3.3291
37 1 4.2010 -2.1664 -1.6945
38 1 3.5581 -1.5632 -3.2411
39 1 1.7872 -2.7281 0.5426
40 1 2.4707 1.0460 2.4206
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000615756370.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:29:11
Heat of formation + Delta-G solvation = 27.072417 kcal
Electronic energy + Delta-G solvation = -21890.050318 eV
Core-core repulsion = 18663.821614 eV
Total energy + Delta-G solvation = -3226.228704 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 314.091 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.47534 -39.01865 -37.82243 -36.30947 -34.29647 -32.44579 -31.48409 -29.81699
-29.58900 -26.43434 -25.68619 -23.89360 -23.30982 -22.10971 -20.70274 -19.83880
-19.17026 -18.63116 -17.02355 -16.82863 -16.40070 -15.67152 -15.46614 -15.32219
-14.97491 -14.86966 -14.55352 -14.41962 -14.37221 -13.90546 -13.58239 -13.45431
-13.07977 -13.03005 -12.73559 -12.64498 -12.53941 -12.42303 -12.22184 -12.03775
-11.94750 -11.92158 -11.77891 -11.60449 -11.23542 -11.08727 -10.56928 -9.73547
-9.49058 -9.33047 -8.59672 -7.88137 -5.40808 -0.21809 0.10589 0.79055
1.19957 1.45730 1.47509 1.53010 1.58646 2.50784 3.17325 3.30448
3.71119 3.82794 3.99299 4.09960 4.13634 4.31518 4.45249 4.52519
4.57049 4.59306 4.69952 4.72743 4.82880 4.90328 5.01077 5.02253
5.10221 5.14037 5.19746 5.27981 5.35032 5.40797 5.44639 5.50756
5.66565 5.72332 6.17896 6.42534 6.52959 7.16136 7.84899 8.41089
9.17777
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.018890 B = 0.003222 C = 0.003019
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1481.876838 B = 8688.204711 C = 9272.685858
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C 0.144 3.856
3 H 0.082 0.918
4 N -0.670 5.670
5 C 0.110 3.890
6 C -0.103 4.103
7 C 0.141 3.859
8 N -0.608 5.608
9 C -0.268 4.268
10 H 0.062 0.938
11 C -0.043 4.043
12 N -0.934 5.934
13 Si 0.966 3.034
14 H -0.265 1.265
15 H -0.291 1.291
16 H -0.288 1.288
17 C 0.187 3.813
18 C -0.126 4.126
19 C -0.125 4.125
20 C -0.204 4.204
21 S 0.160 5.840
22 C -0.164 4.164
23 Cl -0.017 7.017
24 C -0.115 4.115
25 H 0.060 0.940
26 H 0.065 0.935
27 H 0.064 0.936
28 H 0.344 0.656
29 H 0.028 0.972
30 H 0.056 0.944
31 H 0.072 0.928
32 H 0.007 0.993
33 H 0.053 0.947
34 H 0.250 0.750
35 H -0.008 1.008
36 H 0.042 0.958
37 H 0.065 0.935
38 H 0.058 0.942
39 H 0.187 0.813
40 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.945 -2.844 15.344 22.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.031 3.969
3 H 0.100 0.900
4 N -0.301 5.301
5 C 0.001 3.999
6 C -0.142 4.142
7 C 0.015 3.985
8 N -0.332 5.332
9 C -0.399 4.399
10 H 0.079 0.921
11 C -0.239 4.239
12 N -0.579 5.579
13 Si 0.794 3.206
14 H -0.190 1.190
15 H -0.218 1.218
16 H -0.215 1.215
17 C 0.060 3.940
18 C -0.166 4.166
19 C -0.139 4.139
20 C -0.341 4.341
21 S 0.423 5.577
22 C -0.308 4.308
23 Cl 0.012 6.988
24 C -0.148 4.148
25 H 0.079 0.921
26 H 0.084 0.916
27 H 0.083 0.917
28 H 0.164 0.836
29 H 0.046 0.954
30 H 0.075 0.925
31 H 0.091 0.909
32 H 0.024 0.976
33 H 0.071 0.929
34 H 0.059 0.941
35 H 0.010 0.990
36 H 0.060 0.940
37 H 0.083 0.917
38 H 0.077 0.923
39 H 0.204 0.796
40 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -15.777 -3.845 15.763 22.632
hybrid contribution 1.408 0.880 -0.542 1.747
sum -14.369 -2.965 15.221 21.141
Atomic orbital electron populations
1.21681 0.91854 1.02677 1.02057 1.20421 0.96547 0.96881 0.83022
0.90029 1.60798 1.25596 1.09566 1.34182 1.21169 0.88075 0.95016
0.95657 1.21820 0.96359 0.96924 0.99108 1.21077 0.91309 0.90631
0.95510 1.44235 1.59303 1.11005 1.18667 1.19472 0.99071 1.31681
0.89632 0.92079 1.25965 0.95532 1.01552 1.00889 1.70181 1.11816
1.44449 1.31423 0.85240 0.77789 0.77198 0.80417 1.18957 1.21776
1.21483 1.20401 0.92578 0.88023 0.92975 1.22160 0.97190 0.97352
0.99894 1.19663 1.02618 0.93602 0.98016 1.25719 1.07905 0.99115
1.01331 1.84307 1.62320 1.01984 1.09099 1.25380 1.12442 0.98758
0.94184 1.98364 1.86147 1.88247 1.26046 1.20268 1.00620 1.02170
0.91739 0.92101 0.91576 0.91670 0.83572 0.95397 0.92500 0.90939
0.97551 0.92888 0.94075 0.99009 0.93992 0.91683 0.92290 0.79594
0.82768
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.05 9.50 71.98 0.68 -1.36 16
2 C 0.14 2.91 2.72 44.17 0.12 3.03 16
3 H 0.08 1.78 7.22 -2.39 -0.02 1.76 16
4 N -0.67 -16.11 6.06 -473.19 -2.87 -18.98 16
5 C 0.11 3.48 2.25 44.95 0.10 3.58 16
6 C -0.10 -3.47 5.59 30.67 0.17 -3.29 16
7 C 0.14 5.99 6.52 86.36 0.56 6.55 16
8 N -0.61 -31.18 2.95 -699.08 -2.06 -33.24 16
9 C -0.27 -15.04 9.51 84.03 0.80 -14.24 16
10 H 0.06 3.37 7.87 -2.91 -0.02 3.34 16
11 C -0.04 -2.45 4.91 84.86 0.42 -2.03 16
12 N -0.93 -56.10 11.60 21.65 0.25 -55.84 16
13 Si 0.97 45.16 29.58 68.60 2.03 47.19 16
14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16
15 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16
16 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16
17 C 0.19 9.08 5.26 86.36 0.45 9.53 16
18 C -0.13 -4.63 5.34 30.67 0.16 -4.46 16
19 C -0.13 -2.51 4.65 -20.91 -0.10 -2.61 16
20 C -0.20 -3.74 10.19 66.71 0.68 -3.06 16
21 S 0.16 2.96 23.34 -56.49 -1.32 1.64 16
22 C -0.16 -3.42 7.10 66.75 0.47 -2.94 16
23 Cl -0.02 -0.33 29.29 -2.72 -0.08 -0.41 16
24 C -0.12 -2.38 9.90 21.25 0.21 -2.17 16
25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
27 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16
28 H 0.34 7.48 6.23 -89.69 -0.56 6.92 16
29 H 0.03 0.96 7.70 -2.39 -0.02 0.94 16
30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
31 H 0.07 2.08 7.62 -2.39 -0.02 2.07 16
32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16
33 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16
34 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16
35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16
36 H 0.04 2.29 6.54 -2.39 -0.02 2.28 16
37 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16
38 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16
39 H 0.19 2.72 6.98 -2.91 -0.02 2.70 16
40 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16
Total: -1.00 -63.07 347.14 1.17 -61.90
By element:
Atomic # 1 Polarization: 10.74 SS G_CDS: 0.48 Total: 11.22 kcal
Atomic # 6 Polarization: -18.21 SS G_CDS: 4.74 Total: -13.47 kcal
Atomic # 7 Polarization: -103.39 SS G_CDS: -4.68 Total: -108.07 kcal
Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal
Atomic # 16 Polarization: 2.96 SS G_CDS: -1.32 Total: 1.64 kcal
Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal
Total: -63.07 1.17 -61.90 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000615756370.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.975 kcal
(2) G-P(sol) polarization free energy of solvation -63.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.903 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.902 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.072 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds