Wall clock time and date at job start Tue Mar 31 2020 10:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46985 * 2 1 4 4 N 1.46894 * 109.47554 * 239.99952 * 2 1 3 5 5 C 1.46892 * 111.00388 * 152.65000 * 4 2 1 6 6 C 1.53046 * 109.45955 * 272.77653 * 5 4 2 7 7 C 1.53191 * 109.31358 * 178.59826 * 6 5 4 8 8 N 1.46927 * 108.76600 * 54.65854 * 7 6 5 9 9 C 1.36936 * 120.63726 * 126.36043 * 8 7 6 10 10 H 1.08000 * 119.99616 * 325.24048 * 9 8 7 11 11 C 1.38805 * 120.00277 * 145.23051 * 9 8 7 12 12 N 1.31613 * 120.00233 * 344.83582 * 11 9 8 13 13 Si 1.86807 * 119.99872 * 164.83195 * 11 9 8 14 14 H 1.48499 * 109.46805 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47039 * 120.00438 * 13 11 9 16 16 H 1.48496 * 109.46979 * 240.00341 * 13 11 9 17 17 C 1.46938 * 118.73509 * 306.38269 * 8 7 6 18 18 C 1.53039 * 109.46239 * 152.72220 * 5 4 2 19 19 C 1.50704 * 109.46762 * 119.99522 * 2 1 3 20 20 C 1.33353 * 122.53142 * 80.03035 * 19 2 1 21 21 S 1.75877 * 109.62293 * 179.97438 * 20 19 2 22 22 C 1.75884 * 90.97965 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 125.20815 * 180.02562 * 22 21 20 24 24 C 1.33499 * 109.58211 * 0.26444 * 22 21 20 25 25 H 1.08998 * 109.46806 * 175.34062 * 1 2 3 26 26 H 1.08996 * 109.47499 * 295.34553 * 1 2 3 27 27 H 1.09005 * 109.46922 * 55.34386 * 1 2 3 28 28 H 1.00899 * 110.99929 * 276.60496 * 4 2 1 29 29 H 1.08997 * 109.46247 * 32.74669 * 5 4 2 30 30 H 1.08995 * 109.49761 * 298.56484 * 6 5 4 31 31 H 1.09000 * 109.49327 * 58.66150 * 6 5 4 32 32 H 1.09004 * 109.59916 * 294.87409 * 7 6 5 33 33 H 1.08998 * 109.70512 * 174.50535 * 7 6 5 34 34 H 0.97003 * 120.00241 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.58423 * 293.81592 * 17 8 7 36 36 H 1.08997 * 109.69901 * 173.46710 * 17 8 7 37 37 H 1.09000 * 109.49999 * 301.33768 * 18 5 4 38 38 H 1.09004 * 109.49602 * 61.40226 * 18 5 4 39 39 H 1.08004 * 125.18938 * 359.93312 * 20 19 2 40 40 H 1.08008 * 122.55703 * 179.71959 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 3.3436 -0.1920 -1.5926 6 6 3.1781 1.0245 -2.5064 7 6 4.5603 1.5648 -2.8861 8 7 5.3499 0.4732 -3.4722 9 6 5.9375 0.6185 -4.7006 10 1 5.4452 1.1950 -5.4698 11 6 7.1658 0.0251 -4.9570 12 7 7.9040 -0.4167 -3.9609 13 14 7.7711 -0.1467 -6.7159 14 1 6.7631 0.4252 -7.6443 15 1 9.0557 0.5820 -6.8706 16 1 7.9760 -1.5833 -7.0308 17 6 5.4966 -0.7778 -2.7155 18 6 4.1039 -1.2917 -2.3375 19 6 2.0323 -0.7103 1.2306 20 6 2.0877 -2.0398 1.3188 21 16 2.7239 -2.5014 2.8921 22 6 2.8846 -0.8125 3.3562 23 17 3.4876 -0.2470 4.8828 24 6 2.4671 -0.0321 2.3567 25 1 -0.3633 -1.0243 -0.0835 26 1 -0.3634 0.4399 0.9287 27 1 -0.3633 0.5844 -0.8454 28 1 2.0381 -1.6913 -1.0580 29 1 3.9021 0.0962 -0.7020 30 1 2.6414 0.7313 -3.4087 31 1 2.6162 1.7984 -1.9835 32 1 5.0629 1.9417 -1.9953 33 1 4.4533 2.3696 -3.6134 34 1 8.7623 -0.8317 -4.1401 35 1 6.0756 -0.5918 -1.8109 36 1 6.0062 -1.5207 -3.3291 37 1 4.2010 -2.1664 -1.6945 38 1 3.5581 -1.5632 -3.2411 39 1 1.7872 -2.7281 0.5426 40 1 2.4707 1.0460 2.4206 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615756370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:11 Heat of formation + Delta-G solvation = 27.072417 kcal Electronic energy + Delta-G solvation = -21890.050318 eV Core-core repulsion = 18663.821614 eV Total energy + Delta-G solvation = -3226.228704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47534 -39.01865 -37.82243 -36.30947 -34.29647 -32.44579 -31.48409 -29.81699 -29.58900 -26.43434 -25.68619 -23.89360 -23.30982 -22.10971 -20.70274 -19.83880 -19.17026 -18.63116 -17.02355 -16.82863 -16.40070 -15.67152 -15.46614 -15.32219 -14.97491 -14.86966 -14.55352 -14.41962 -14.37221 -13.90546 -13.58239 -13.45431 -13.07977 -13.03005 -12.73559 -12.64498 -12.53941 -12.42303 -12.22184 -12.03775 -11.94750 -11.92158 -11.77891 -11.60449 -11.23542 -11.08727 -10.56928 -9.73547 -9.49058 -9.33047 -8.59672 -7.88137 -5.40808 -0.21809 0.10589 0.79055 1.19957 1.45730 1.47509 1.53010 1.58646 2.50784 3.17325 3.30448 3.71119 3.82794 3.99299 4.09960 4.13634 4.31518 4.45249 4.52519 4.57049 4.59306 4.69952 4.72743 4.82880 4.90328 5.01077 5.02253 5.10221 5.14037 5.19746 5.27981 5.35032 5.40797 5.44639 5.50756 5.66565 5.72332 6.17896 6.42534 6.52959 7.16136 7.84899 8.41089 9.17777 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.003222 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.876838 B = 8688.204711 C = 9272.685858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.144 3.856 3 H 0.082 0.918 4 N -0.670 5.670 5 C 0.110 3.890 6 C -0.103 4.103 7 C 0.141 3.859 8 N -0.608 5.608 9 C -0.268 4.268 10 H 0.062 0.938 11 C -0.043 4.043 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.265 1.265 15 H -0.291 1.291 16 H -0.288 1.288 17 C 0.187 3.813 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.204 4.204 21 S 0.160 5.840 22 C -0.164 4.164 23 Cl -0.017 7.017 24 C -0.115 4.115 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.344 0.656 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.007 0.993 33 H 0.053 0.947 34 H 0.250 0.750 35 H -0.008 1.008 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.187 0.813 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.945 -2.844 15.344 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.031 3.969 3 H 0.100 0.900 4 N -0.301 5.301 5 C 0.001 3.999 6 C -0.142 4.142 7 C 0.015 3.985 8 N -0.332 5.332 9 C -0.399 4.399 10 H 0.079 0.921 11 C -0.239 4.239 12 N -0.579 5.579 13 Si 0.794 3.206 14 H -0.190 1.190 15 H -0.218 1.218 16 H -0.215 1.215 17 C 0.060 3.940 18 C -0.166 4.166 19 C -0.139 4.139 20 C -0.341 4.341 21 S 0.423 5.577 22 C -0.308 4.308 23 Cl 0.012 6.988 24 C -0.148 4.148 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.164 0.836 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.010 0.990 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.204 0.796 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.777 -3.845 15.763 22.632 hybrid contribution 1.408 0.880 -0.542 1.747 sum -14.369 -2.965 15.221 21.141 Atomic orbital electron populations 1.21681 0.91854 1.02677 1.02057 1.20421 0.96547 0.96881 0.83022 0.90029 1.60798 1.25596 1.09566 1.34182 1.21169 0.88075 0.95016 0.95657 1.21820 0.96359 0.96924 0.99108 1.21077 0.91309 0.90631 0.95510 1.44235 1.59303 1.11005 1.18667 1.19472 0.99071 1.31681 0.89632 0.92079 1.25965 0.95532 1.01552 1.00889 1.70181 1.11816 1.44449 1.31423 0.85240 0.77789 0.77198 0.80417 1.18957 1.21776 1.21483 1.20401 0.92578 0.88023 0.92975 1.22160 0.97190 0.97352 0.99894 1.19663 1.02618 0.93602 0.98016 1.25719 1.07905 0.99115 1.01331 1.84307 1.62320 1.01984 1.09099 1.25380 1.12442 0.98758 0.94184 1.98364 1.86147 1.88247 1.26046 1.20268 1.00620 1.02170 0.91739 0.92101 0.91576 0.91670 0.83572 0.95397 0.92500 0.90939 0.97551 0.92888 0.94075 0.99009 0.93992 0.91683 0.92290 0.79594 0.82768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 9.50 71.98 0.68 -1.36 16 2 C 0.14 2.91 2.72 44.17 0.12 3.03 16 3 H 0.08 1.78 7.22 -2.39 -0.02 1.76 16 4 N -0.67 -16.11 6.06 -473.19 -2.87 -18.98 16 5 C 0.11 3.48 2.25 44.95 0.10 3.58 16 6 C -0.10 -3.47 5.59 30.67 0.17 -3.29 16 7 C 0.14 5.99 6.52 86.36 0.56 6.55 16 8 N -0.61 -31.18 2.95 -699.08 -2.06 -33.24 16 9 C -0.27 -15.04 9.51 84.03 0.80 -14.24 16 10 H 0.06 3.37 7.87 -2.91 -0.02 3.34 16 11 C -0.04 -2.45 4.91 84.86 0.42 -2.03 16 12 N -0.93 -56.10 11.60 21.65 0.25 -55.84 16 13 Si 0.97 45.16 29.58 68.60 2.03 47.19 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 16 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 17 C 0.19 9.08 5.26 86.36 0.45 9.53 16 18 C -0.13 -4.63 5.34 30.67 0.16 -4.46 16 19 C -0.13 -2.51 4.65 -20.91 -0.10 -2.61 16 20 C -0.20 -3.74 10.19 66.71 0.68 -3.06 16 21 S 0.16 2.96 23.34 -56.49 -1.32 1.64 16 22 C -0.16 -3.42 7.10 66.75 0.47 -2.94 16 23 Cl -0.02 -0.33 29.29 -2.72 -0.08 -0.41 16 24 C -0.12 -2.38 9.90 21.25 0.21 -2.17 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.34 7.48 6.23 -89.69 -0.56 6.92 16 29 H 0.03 0.96 7.70 -2.39 -0.02 0.94 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.08 7.62 -2.39 -0.02 2.07 16 32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 34 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.04 2.29 6.54 -2.39 -0.02 2.28 16 37 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16 38 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.19 2.72 6.98 -2.91 -0.02 2.70 16 40 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -63.07 347.14 1.17 -61.90 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.48 Total: 11.22 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 4.74 Total: -13.47 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -4.68 Total: -108.07 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.32 Total: 1.64 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -63.07 1.17 -61.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615756370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.975 kcal (2) G-P(sol) polarization free energy of solvation -63.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds