Wall clock time and date at job start Tue Mar 31 2020 10:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46771 * 2 1 4 4 O 1.42894 * 109.47226 * 120.00013 * 2 1 3 5 5 C 1.35901 * 116.99900 * 155.02937 * 4 2 1 6 6 C 1.38784 * 120.02820 * 5.45894 * 5 4 2 7 7 C 1.38158 * 120.05719 * 179.97438 * 6 5 4 8 8 C 1.38206 * 120.10665 * 359.74238 * 7 6 5 9 9 C 1.38758 * 120.05073 * 0.51578 * 8 7 6 10 10 O 1.35895 * 120.02540 * 179.77069 * 9 8 7 11 11 S 1.52208 * 113.99387 * 269.72062 * 10 9 8 12 12 O 1.42099 * 104.27574 * 318.92562 * 11 10 9 13 13 O 1.42098 * 104.27280 * 191.07138 * 11 10 9 14 14 C 1.81394 * 104.44918 * 75.00263 * 11 10 9 15 15 C 1.53001 * 109.46798 * 180.02562 * 14 11 10 16 16 C 1.50704 * 109.47038 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99996 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00280 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00155 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46985 * 90.00119 * 20 18 16 22 22 H 1.48500 * 109.46993 * 210.00448 * 20 18 16 23 23 H 1.48499 * 109.47008 * 330.00251 * 20 18 16 24 24 C 1.38618 * 120.02487 * 185.44433 * 5 4 2 25 25 H 1.08999 * 109.47013 * 299.99629 * 1 2 3 26 26 H 1.09003 * 109.47120 * 60.00320 * 1 2 3 27 27 H 1.09001 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47536 * 240.00331 * 2 1 3 29 29 H 1.08999 * 109.47049 * 60.00393 * 3 2 1 30 30 H 1.09006 * 109.46936 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46990 * 300.00047 * 3 2 1 32 32 H 1.07998 * 119.97512 * 0.02562 * 6 5 4 33 33 H 1.07993 * 119.95188 * 180.02562 * 7 6 5 34 34 H 1.07990 * 119.97426 * 180.25560 * 8 7 6 35 35 H 1.08998 * 109.47075 * 299.99503 * 14 11 10 36 36 H 1.08999 * 109.47614 * 59.99780 * 14 11 10 37 37 H 1.09001 * 109.47382 * 299.99435 * 15 14 11 38 38 H 1.09000 * 109.47729 * 59.99655 * 15 14 11 39 39 H 0.96992 * 120.00171 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.05565 * 0.03383 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2469 -1.2242 1.0980 6 6 4.0352 -1.0218 -0.0262 7 6 5.2967 -1.5808 -0.0965 8 6 5.7789 -2.3382 0.9542 9 6 4.9925 -2.5479 2.0780 10 8 5.4653 -3.2966 3.1088 11 16 5.1422 -4.7797 2.9957 12 8 3.8019 -4.8114 2.5250 13 8 5.4845 -5.3108 4.2685 14 6 6.2788 -5.3947 1.7228 15 6 6.0488 -6.8930 1.5147 16 6 6.9927 -7.4039 0.4568 17 1 7.6874 -6.7277 -0.0192 18 6 6.9700 -8.7347 0.0973 19 7 6.1244 -9.5584 0.6773 20 14 8.1404 -9.3682 -1.2136 21 1 9.4027 -9.8189 -0.5742 22 1 7.5128 -10.5087 -1.9282 23 1 8.4361 -8.2806 -2.1805 24 6 3.7261 -1.9881 2.1508 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 3.6626 -0.4262 -0.8464 33 1 5.9089 -1.4219 -0.9719 34 1 6.7669 -2.7707 0.8987 35 1 6.0968 -4.8662 0.7871 36 1 7.3074 -5.2255 2.0416 37 1 6.2306 -7.4219 2.4503 38 1 5.0203 -7.0619 1.1958 39 1 6.1082 -10.4945 0.4241 40 1 3.1140 -2.1469 3.0263 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732221484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:36 Heat of formation + Delta-G solvation = -127.818230 kcal Electronic energy + Delta-G solvation = -24162.549152 eV Core-core repulsion = 20456.601970 eV Total energy + Delta-G solvation = -3705.947183 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.14487 -39.90340 -37.17533 -36.70814 -35.62723 -33.95589 -33.57183 -31.27115 -30.67565 -29.83682 -27.62790 -25.71900 -24.04060 -23.06008 -22.15448 -21.38862 -19.99648 -18.66215 -17.75359 -17.13841 -16.84599 -16.45180 -16.39542 -15.69113 -15.62482 -14.87425 -14.60234 -14.51580 -14.00744 -13.85659 -13.46875 -13.21025 -13.13221 -12.70034 -12.63975 -12.55084 -12.40798 -12.02907 -11.85559 -11.77294 -11.71611 -11.60615 -11.56312 -11.11076 -11.05983 -10.97277 -10.94475 -10.44403 -10.40139 -9.75983 -9.27712 -9.04095 -8.52137 -8.46848 -6.13719 -4.19465 0.34849 1.14103 1.15371 2.39207 2.94695 3.25232 3.31383 3.33788 3.39743 4.07282 4.35577 4.36567 4.39834 4.48696 4.58860 4.63190 4.78287 4.84744 4.89976 5.12897 5.15973 5.21411 5.22369 5.32726 5.40538 5.46514 5.59938 5.64624 5.71735 5.78261 5.89347 5.94829 6.07220 6.12080 6.42500 6.53457 7.15293 7.27357 7.33400 7.78913 8.15232 8.83565 9.45253 10.97355 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.017057 B = 0.003452 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.181446 B = 8108.888296 C = 8781.038139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 C -0.181 4.181 4 O -0.305 6.305 5 C 0.149 3.851 6 C -0.201 4.201 7 C -0.060 4.060 8 C -0.167 4.167 9 C 0.119 3.881 10 O -0.673 6.673 11 S 2.573 3.427 12 O -0.957 6.957 13 O -0.935 6.935 14 C -0.611 4.611 15 C 0.030 3.970 16 C -0.521 4.521 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.130 4.130 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.265 0.735 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 22.227 -3.769 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 C -0.239 4.239 4 O -0.219 6.219 5 C 0.103 3.897 6 C -0.221 4.221 7 C -0.078 4.078 8 C -0.187 4.187 9 C 0.077 3.923 10 O -0.632 6.632 11 S 2.673 3.327 12 O -0.955 6.955 13 O -0.933 6.933 14 C -0.742 4.742 15 C -0.008 4.008 16 C -0.560 4.560 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.150 4.150 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.117 22.160 -2.879 23.453 hybrid contribution 1.218 -0.652 -1.173 1.813 sum -5.899 21.508 -4.052 22.668 Atomic orbital electron populations 1.21865 0.92199 1.03577 1.03051 1.22521 0.95719 0.92565 0.87371 1.22411 1.02262 0.95914 1.03289 1.86147 1.28842 1.67959 1.38943 1.18537 0.84918 0.92697 0.93561 1.21455 0.96212 1.05616 0.98793 1.20796 0.94843 0.94546 0.97632 1.21361 1.01315 1.03018 0.92981 1.17595 0.92735 0.96795 0.85176 1.85758 1.81931 1.43021 1.52468 1.06141 0.76598 0.72839 0.77130 1.93604 1.35254 1.83605 1.83043 1.93587 1.85239 1.75524 1.38997 1.30714 1.15192 1.12385 1.15924 1.18956 0.99264 0.83216 0.99382 1.20990 1.19720 0.94176 1.21115 0.91977 1.25069 0.95822 0.96863 0.96721 1.69954 1.36021 1.04693 1.42116 0.86459 0.80769 0.78570 0.81418 1.20450 1.21004 1.19757 1.20391 0.95052 0.99274 1.00317 0.91388 0.90429 0.91287 0.90476 0.91311 0.91686 0.90871 0.84386 0.84083 0.83656 0.85792 0.85547 0.94671 0.94623 0.92493 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.56 37.16 0.36 -0.63 16 2 C 0.07 0.59 2.85 -26.73 -0.08 0.52 16 3 C -0.18 -1.13 9.17 37.16 0.34 -0.79 16 4 O -0.30 -3.57 9.80 -19.43 -0.19 -3.76 16 5 C 0.15 1.89 6.60 -39.24 -0.26 1.63 16 6 C -0.20 -2.08 8.24 -39.41 -0.32 -2.41 16 7 C -0.06 -0.62 10.04 -39.62 -0.40 -1.02 16 8 C -0.17 -2.11 8.46 -39.40 -0.33 -2.45 16 9 C 0.12 1.83 4.79 -39.24 -0.19 1.64 16 10 O -0.67 -11.36 10.05 -51.73 -0.52 -11.88 16 11 S 2.57 50.06 5.17 -107.50 -0.56 49.51 16 12 O -0.96 -20.25 16.26 -67.04 -1.09 -21.34 16 13 O -0.94 -20.94 18.09 -67.04 -1.21 -22.15 16 14 C -0.61 -11.93 5.41 37.16 0.20 -11.73 16 15 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 16 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 20 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.13 -1.93 8.98 -39.29 -0.35 -2.29 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.55 6.31 -51.93 -0.33 0.23 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 6.91 -51.93 -0.36 0.06 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.14 1.02 5.42 -52.49 -0.28 0.74 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.15 1.57 7.52 -52.49 -0.39 1.18 16 35 H 0.12 2.14 6.62 -51.92 -0.34 1.80 16 36 H 0.13 2.19 8.14 -51.92 -0.42 1.77 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.15 2.14 8.06 -52.48 -0.42 1.71 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -34.95 347.25 -9.68 -44.63 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.48 Total: -0.67 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: -1.58 Total: -29.96 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -3.01 Total: -59.13 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 50.06 SS G_CDS: -0.56 Total: 49.51 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.95 -9.68 -44.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732221484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.187 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds