Wall clock time and date at job start Tue Mar 31 2020 10:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 102.99882 * 2 1 4 4 C 1.53001 * 109.47131 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47366 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47196 * 180.02562 * 5 4 3 7 7 C 1.34769 * 119.99807 * 180.02562 * 6 5 4 8 8 S 1.71200 * 120.00350 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99789 * 179.97438 * 7 6 5 10 10 C 1.40148 * 119.99997 * 185.11440 * 9 7 6 11 11 C 1.40409 * 125.97469 * 174.94245 * 10 9 7 12 12 C 1.35242 * 107.86704 * 179.71805 * 11 10 9 13 13 N 1.34960 * 107.85839 * 0.42197 * 12 11 10 14 14 C 1.46503 * 125.97168 * 179.83982 * 13 12 11 15 15 C 1.50699 * 109.47187 * 124.71443 * 14 13 12 16 16 H 1.08005 * 120.00165 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00129 * 180.02562 * 15 14 13 18 18 N 1.31507 * 119.99748 * 359.72250 * 17 15 14 19 19 Si 1.86800 * 120.00086 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47275 * 179.72497 * 19 17 15 21 21 H 1.48504 * 109.47166 * 299.72439 * 19 17 15 22 22 H 1.48500 * 109.47237 * 59.72267 * 19 17 15 23 23 N 1.31218 * 125.97315 * 354.91511 * 10 9 7 24 24 H 1.09002 * 109.47121 * 300.00224 * 1 2 3 25 25 H 1.08999 * 109.47211 * 59.99815 * 1 2 3 26 26 H 1.08997 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47325 * 59.99783 * 3 2 1 28 28 H 1.09000 * 109.47451 * 299.99692 * 3 2 1 29 29 H 1.09010 * 109.46663 * 60.00254 * 4 3 2 30 30 H 1.08999 * 109.47399 * 300.00064 * 4 3 2 31 31 H 1.09010 * 109.46762 * 60.00633 * 5 4 3 32 32 H 1.08999 * 109.47485 * 300.00970 * 5 4 3 33 33 H 0.96997 * 119.99701 * 0.02562 * 6 5 4 34 34 H 0.96997 * 120.00027 * 5.11561 * 9 7 6 35 35 H 1.08004 * 126.06485 * 359.97330 * 11 10 9 36 36 H 1.07996 * 126.06717 * 180.29268 * 12 11 10 37 37 H 1.09003 * 109.47217 * 4.71523 * 14 13 12 38 38 H 1.08999 * 109.47147 * 244.71556 * 14 13 12 39 39 H 0.96993 * 120.00553 * 0.27902 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0865 3.4307 0.0000 6 7 5.5422 3.5958 0.0000 7 6 6.0802 4.8315 0.0000 8 16 5.0626 6.2082 0.0007 9 7 7.4194 4.9834 0.0005 10 6 7.9794 6.2635 0.1087 11 6 9.3475 6.5585 0.2222 12 6 9.4774 7.9026 0.2967 13 7 8.2413 8.4415 0.2427 14 6 7.9224 9.8704 0.2954 15 6 7.1023 10.2470 -0.9115 16 1 6.8447 9.4971 -1.6448 17 6 6.6817 11.5492 -1.0802 18 7 6.9916 12.4614 -0.1851 19 14 5.6645 12.0159 -2.5759 20 1 5.3363 13.4630 -2.5194 21 1 6.4400 11.7320 -3.8101 22 1 4.4086 11.2235 -2.5872 23 7 7.3169 7.3961 0.1212 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8031 2.2372 0.8900 28 1 1.8032 2.2371 -0.8900 29 1 4.1616 1.4702 -0.8892 30 1 4.1609 1.4705 0.8908 31 1 3.6672 3.9008 0.8897 32 1 3.6679 3.8999 -0.8903 33 1 6.1187 2.8158 0.0000 34 1 7.9956 4.2067 -0.0740 35 1 10.1534 5.8397 0.2420 36 1 10.4054 8.4477 0.3859 37 1 8.8463 10.4489 0.3018 38 1 7.3546 10.0828 1.2012 39 1 7.5194 12.2191 0.5917 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735420437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:02 Heat of formation + Delta-G solvation = 100.393942 kcal Electronic energy + Delta-G solvation = -20467.261543 eV Core-core repulsion = 17278.548756 eV Total energy + Delta-G solvation = -3188.712787 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56754 -38.82232 -36.21718 -33.89026 -33.11317 -30.73358 -29.44155 -29.33817 -27.22501 -25.94586 -23.89375 -22.97973 -22.31078 -20.79628 -20.15413 -18.05035 -17.38505 -17.04041 -16.61290 -16.31733 -15.71948 -15.16980 -15.00980 -14.59760 -14.20554 -14.14583 -13.83447 -13.74637 -13.67156 -13.27228 -12.93184 -12.58806 -12.40900 -12.02441 -11.81755 -11.68998 -11.42534 -10.98447 -10.64764 -10.63968 -10.48043 -10.05871 -10.01019 -9.93532 -8.88317 -8.43412 -8.19844 -8.15893 -7.83823 -7.31946 -6.48166 -6.42794 -4.14190 1.15108 1.42019 2.07676 2.14443 2.62759 2.82789 3.33911 3.48225 3.51984 3.54008 3.70747 3.86892 4.34946 4.40440 4.47189 4.54987 4.67995 4.69658 4.98009 5.04328 5.24122 5.25011 5.30395 5.34486 5.52188 5.57265 5.62000 5.92734 6.03282 6.30428 6.43515 6.56707 6.77001 6.92078 7.31172 7.43779 7.83156 7.93417 8.52731 8.64810 8.78027 9.52561 10.95274 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.002628 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.792849 B =10651.642139 C =12058.763202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.267 6.267 3 C -0.081 4.081 4 C -0.117 4.117 5 C 0.133 3.867 6 N -0.693 5.693 7 C 0.523 3.477 8 S -0.517 6.517 9 N -0.588 5.588 10 C 0.230 3.770 11 C -0.306 4.306 12 C 0.057 3.943 13 N -0.330 5.330 14 C 0.249 3.751 15 C -0.596 4.596 16 H 0.065 0.935 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 1.075 2.925 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.284 1.284 23 N -0.181 5.181 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.392 0.608 34 H 0.404 0.596 35 H 0.136 0.864 36 H 0.164 0.836 37 H 0.041 0.959 38 H 0.035 0.965 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -25.698 1.383 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.041 6.041 3 C -0.230 4.230 4 C -0.156 4.156 5 C 0.007 3.993 6 N -0.326 5.326 7 C 0.168 3.832 8 S -0.390 6.390 9 N -0.215 5.215 10 C -0.025 4.025 11 C -0.339 4.339 12 C -0.094 4.094 13 N -0.111 5.111 14 C 0.130 3.870 15 C -0.634 4.634 16 H 0.083 0.917 17 C -0.182 4.182 18 N -0.546 5.546 19 Si 0.902 3.098 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.210 1.210 23 N -0.010 5.010 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.228 0.772 34 H 0.241 0.759 35 H 0.154 0.846 36 H 0.181 0.819 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.194 -23.614 0.615 24.420 hybrid contribution 1.957 -2.249 0.764 3.078 sum -4.237 -25.863 1.379 26.244 Atomic orbital electron populations 1.23387 0.93659 1.06611 1.05228 1.86883 1.07961 1.11154 1.98138 1.23237 0.99174 0.94489 1.06073 1.21517 0.93981 0.95964 1.04115 1.21612 0.77497 0.95022 1.05162 1.44761 1.08865 1.04537 1.74420 1.22582 0.86652 0.91294 0.82700 1.93819 1.53683 1.24110 1.67390 1.41574 1.03276 1.07225 1.69422 1.19167 0.91225 0.84527 1.07571 1.20651 0.93621 0.95368 1.24298 1.22393 0.91492 0.93496 1.02006 1.50030 1.03044 1.08601 1.49399 1.19725 0.97461 0.70284 0.99554 1.22081 1.36341 0.97531 1.07490 0.91691 1.25857 0.97335 0.92221 1.02807 1.70844 1.36541 1.36016 1.11187 0.83450 0.76206 0.75999 0.74133 1.20727 1.21401 1.20993 1.80083 1.09237 0.91624 1.20042 0.90278 0.90273 0.88032 0.89244 0.89224 0.90223 0.90223 0.89373 0.89375 0.77186 0.75880 0.84633 0.81861 0.94135 0.94689 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.76 101.05 1.09 0.48 16 2 S -0.27 -1.96 22.38 -107.50 -2.41 -4.36 16 3 C -0.08 -0.51 5.94 37.16 0.22 -0.29 16 4 C -0.12 -0.71 5.34 -26.73 -0.14 -0.86 16 5 C 0.13 1.18 5.13 -4.04 -0.02 1.16 16 6 N -0.69 -6.75 5.56 -62.03 -0.34 -7.09 16 7 C 0.52 7.92 7.95 -86.92 -0.69 7.23 16 8 S -0.52 -11.16 25.81 -107.50 -2.77 -13.94 16 9 N -0.59 -8.41 5.45 -12.68 -0.07 -8.48 16 10 C 0.23 4.39 7.76 -154.40 -1.20 3.19 16 11 C -0.31 -5.14 10.83 -39.83 -0.43 -5.58 16 12 C 0.06 1.06 11.43 -17.24 -0.20 0.86 16 13 N -0.33 -7.76 3.67 -62.56 -0.23 -7.99 16 14 C 0.25 6.49 5.57 -5.19 -0.03 6.46 16 15 C -0.60 -17.50 9.24 -34.44 -0.32 -17.82 16 16 H 0.06 2.02 7.81 -52.48 -0.41 1.61 16 17 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 18 N -0.91 -27.45 13.65 55.43 0.76 -26.69 16 19 Si 1.07 26.40 29.90 -169.99 -5.08 21.32 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 N -0.18 -4.31 9.05 31.44 0.28 -4.03 16 24 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 25 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 26 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.90 7.99 -51.92 -0.41 0.48 16 32 H 0.09 0.91 7.99 -51.93 -0.42 0.49 16 33 H 0.39 2.40 8.49 -40.82 -0.35 2.05 16 34 H 0.40 3.78 8.84 -40.82 -0.36 3.42 16 35 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 36 H 0.16 2.45 8.06 -52.49 -0.42 2.02 16 37 H 0.04 1.01 7.94 -51.93 -0.41 0.60 16 38 H 0.04 0.97 8.00 -51.93 -0.42 0.55 16 39 H 0.27 7.82 7.22 -40.82 -0.29 7.52 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -37.52 359.61 -11.94 -49.45 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.67 Total: 1.00 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.82 Total: -4.61 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.40 Total: -54.27 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -5.08 Total: 21.32 kcal Atomic # 16 Polarization: -13.12 SS G_CDS: -5.18 Total: -18.30 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.52 -11.94 -49.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735420437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.846 kcal (2) G-P(sol) polarization free energy of solvation -37.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds