Wall clock time and date at job start Tue Mar 31 2020 10:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 102.99882 * 2 1 4 4 C 1.53001 * 109.47131 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47366 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47196 * 180.02562 * 5 4 3 7 7 C 1.34769 * 119.99807 * 180.02562 * 6 5 4 8 8 S 1.71200 * 120.00350 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99789 * 179.97438 * 7 6 5 10 10 C 1.40148 * 119.99997 * 185.11440 * 9 7 6 11 11 C 1.40409 * 125.97469 * 174.94245 * 10 9 7 12 12 C 1.35242 * 107.86704 * 179.71805 * 11 10 9 13 13 N 1.34960 * 107.85839 * 0.42197 * 12 11 10 14 14 C 1.46503 * 125.97168 * 179.83982 * 13 12 11 15 15 C 1.50699 * 109.47187 * 124.71443 * 14 13 12 16 16 H 1.08005 * 120.00165 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00129 * 180.02562 * 15 14 13 18 18 N 1.31507 * 119.99748 * 359.72250 * 17 15 14 19 19 Si 1.86800 * 120.00086 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47275 * 179.72497 * 19 17 15 21 21 H 1.48504 * 109.47166 * 299.72439 * 19 17 15 22 22 H 1.48500 * 109.47237 * 59.72267 * 19 17 15 23 23 N 1.31218 * 125.97315 * 354.91511 * 10 9 7 24 24 H 1.09002 * 109.47121 * 300.00224 * 1 2 3 25 25 H 1.08999 * 109.47211 * 59.99815 * 1 2 3 26 26 H 1.08997 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47325 * 59.99783 * 3 2 1 28 28 H 1.09000 * 109.47451 * 299.99692 * 3 2 1 29 29 H 1.09010 * 109.46663 * 60.00254 * 4 3 2 30 30 H 1.08999 * 109.47399 * 300.00064 * 4 3 2 31 31 H 1.09010 * 109.46762 * 60.00633 * 5 4 3 32 32 H 1.08999 * 109.47485 * 300.00970 * 5 4 3 33 33 H 0.96997 * 119.99701 * 0.02562 * 6 5 4 34 34 H 0.96997 * 120.00027 * 5.11561 * 9 7 6 35 35 H 1.08004 * 126.06485 * 359.97330 * 11 10 9 36 36 H 1.07996 * 126.06717 * 180.29268 * 12 11 10 37 37 H 1.09003 * 109.47217 * 4.71523 * 14 13 12 38 38 H 1.08999 * 109.47147 * 244.71556 * 14 13 12 39 39 H 0.96993 * 120.00553 * 0.27902 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0865 3.4307 0.0000 6 7 5.5422 3.5958 0.0000 7 6 6.0802 4.8315 0.0000 8 16 5.0626 6.2082 0.0007 9 7 7.4194 4.9834 0.0005 10 6 7.9794 6.2635 0.1087 11 6 9.3475 6.5585 0.2222 12 6 9.4774 7.9026 0.2967 13 7 8.2413 8.4415 0.2427 14 6 7.9224 9.8704 0.2954 15 6 7.1023 10.2470 -0.9115 16 1 6.8447 9.4971 -1.6448 17 6 6.6817 11.5492 -1.0802 18 7 6.9916 12.4614 -0.1851 19 14 5.6645 12.0159 -2.5759 20 1 5.3363 13.4630 -2.5194 21 1 6.4400 11.7320 -3.8101 22 1 4.4086 11.2235 -2.5872 23 7 7.3169 7.3961 0.1212 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8031 2.2372 0.8900 28 1 1.8032 2.2371 -0.8900 29 1 4.1616 1.4702 -0.8892 30 1 4.1609 1.4705 0.8908 31 1 3.6672 3.9008 0.8897 32 1 3.6679 3.8999 -0.8903 33 1 6.1187 2.8158 0.0000 34 1 7.9956 4.2067 -0.0740 35 1 10.1534 5.8397 0.2420 36 1 10.4054 8.4477 0.3859 37 1 8.8463 10.4489 0.3018 38 1 7.3546 10.0828 1.2012 39 1 7.5194 12.2191 0.5917 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735420437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:01 Heat of formation + Delta-G solvation = 75.789027 kcal Electronic energy + Delta-G solvation = -20468.328492 eV Core-core repulsion = 17278.548756 eV Total energy + Delta-G solvation = -3189.779736 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07289 -40.02125 -37.31664 -35.81242 -34.20489 -32.44655 -30.86352 -29.84831 -28.56860 -27.39774 -25.32417 -24.71550 -23.18662 -22.20491 -21.62474 -19.34285 -19.09888 -18.62413 -17.53027 -17.05734 -16.99511 -16.52596 -16.15301 -15.91523 -15.65286 -15.42410 -14.95639 -14.71556 -14.55111 -14.36876 -14.06232 -13.93651 -13.61463 -13.39903 -13.11096 -12.99775 -12.58839 -12.44503 -12.19574 -12.09401 -11.95389 -11.47349 -11.32713 -10.99743 -10.84657 -10.64783 -9.71710 -9.35141 -8.94730 -8.71419 -8.70707 -8.09663 -6.46917 0.10355 0.60015 0.88569 1.21852 1.32475 1.48767 1.57661 1.61860 1.78380 2.05093 2.11484 2.49643 2.56928 3.06166 3.77158 3.81652 3.84688 3.88853 4.16438 4.31070 4.33198 4.33782 4.51460 4.53333 4.62127 4.71311 4.77306 4.81230 4.88705 4.93581 4.99002 5.02086 5.25188 5.60224 5.81614 5.97572 6.06443 6.28083 6.38423 6.52733 7.14272 7.27111 8.64122 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.002628 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.792849 B =10651.642139 C =12058.763202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.303 6.303 3 C -0.076 4.076 4 C -0.101 4.101 5 C 0.133 3.867 6 N -0.653 5.653 7 C 0.560 3.440 8 S -0.657 6.657 9 N -0.568 5.568 10 C 0.230 3.770 11 C -0.282 4.282 12 C 0.048 3.952 13 N -0.364 5.364 14 C 0.262 3.738 15 C -0.606 4.606 16 H 0.038 0.962 17 C -0.022 4.022 18 N -0.926 5.926 19 Si 1.116 2.884 20 H -0.271 1.271 21 H -0.267 1.267 22 H -0.286 1.286 23 N -0.242 5.242 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.420 0.580 34 H 0.435 0.565 35 H 0.188 0.812 36 H 0.198 0.802 37 H 0.052 0.948 38 H 0.006 0.994 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 -28.823 0.806 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.078 6.078 3 C -0.225 4.225 4 C -0.140 4.140 5 C 0.008 3.992 6 N -0.285 5.285 7 C 0.198 3.802 8 S -0.531 6.531 9 N -0.198 5.198 10 C -0.028 4.028 11 C -0.314 4.314 12 C -0.100 4.100 13 N -0.146 5.146 14 C 0.142 3.858 15 C -0.645 4.645 16 H 0.057 0.943 17 C -0.221 4.221 18 N -0.563 5.563 19 Si 0.938 3.062 20 H -0.196 1.196 21 H -0.192 1.192 22 H -0.213 1.213 23 N -0.070 5.070 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.129 0.871 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.261 0.739 34 H 0.278 0.722 35 H 0.205 0.795 36 H 0.215 0.785 37 H 0.070 0.930 38 H 0.023 0.977 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.656 -26.854 0.046 27.254 hybrid contribution 1.544 -1.591 0.993 2.430 sum -3.112 -28.445 1.039 28.634 Atomic orbital electron populations 1.23443 0.91432 1.07465 1.05843 1.86951 1.10580 1.12009 1.98224 1.23205 0.99225 0.93764 1.06303 1.21398 0.94046 0.93330 1.05192 1.21690 0.76361 0.97087 1.04101 1.44683 1.09909 1.03471 1.70399 1.21804 0.86141 0.91024 0.81225 1.94175 1.56387 1.28870 1.73631 1.41267 1.03128 1.06881 1.68478 1.19577 0.92328 0.85053 1.05811 1.21163 0.93562 0.95344 1.21320 1.23179 0.91103 0.94688 1.00994 1.49700 1.04789 1.07447 1.52654 1.19244 0.96885 0.72867 0.96830 1.22226 1.37012 0.97090 1.08141 0.94324 1.27165 0.97794 0.92398 1.04747 1.70933 1.37474 1.36306 1.11600 0.82932 0.75027 0.76162 0.72125 1.19610 1.19210 1.21263 1.80047 1.11079 0.93324 1.22599 0.89663 0.89687 0.87078 0.89062 0.89091 0.89118 0.89081 0.90505 0.90580 0.73916 0.72236 0.79465 0.78494 0.93016 0.97651 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.76 113.37 1.22 0.26 16 2 S -0.30 -3.96 22.38 -56.49 -1.26 -5.23 16 3 C -0.08 -0.84 5.94 71.98 0.43 -0.41 16 4 C -0.10 -0.98 5.34 30.59 0.16 -0.81 16 5 C 0.13 2.18 5.13 86.38 0.44 2.62 16 6 N -0.65 -10.95 5.56 -350.15 -1.95 -12.89 16 7 C 0.56 16.21 7.95 179.06 1.42 17.63 16 8 S -0.66 -29.71 25.81 -56.49 -1.46 -31.17 16 9 N -0.57 -14.61 5.45 -194.02 -1.06 -15.67 16 10 C 0.23 8.37 7.76 133.33 1.04 9.41 16 11 C -0.28 -8.46 10.83 22.11 0.24 -8.22 16 12 C 0.05 1.71 11.43 83.52 0.96 2.67 16 13 N -0.36 -17.42 3.67 -351.84 -1.29 -18.71 16 14 C 0.26 14.28 5.57 85.63 0.48 14.76 16 15 C -0.61 -37.04 9.24 25.60 0.24 -36.81 16 16 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 17 C -0.02 -1.32 5.46 84.66 0.46 -0.86 16 18 N -0.93 -57.19 13.65 21.45 0.29 -56.90 16 19 Si 1.12 54.17 29.90 68.60 2.05 56.22 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 23 N -0.24 -11.82 9.05 -54.46 -0.49 -12.31 16 24 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.55 7.99 -2.38 -0.02 1.53 16 32 H 0.08 1.55 7.99 -2.39 -0.02 1.53 16 33 H 0.42 3.18 8.49 -92.71 -0.79 2.39 16 34 H 0.43 5.98 8.84 -92.71 -0.82 5.16 16 35 H 0.19 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.20 5.35 8.06 -2.91 -0.02 5.33 16 37 H 0.05 2.65 7.94 -2.39 -0.02 2.63 16 38 H 0.01 0.33 8.00 -2.39 -0.02 0.31 16 39 H 0.26 15.82 7.22 -92.71 -0.67 15.15 16 Total: -1.00 -88.91 359.61 1.48 -87.43 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -0.44 Total: 9.00 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 7.08 Total: 0.23 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -4.50 Total: -116.48 kcal Atomic # 14 Polarization: 54.17 SS G_CDS: 2.05 Total: 56.22 kcal Atomic # 16 Polarization: -33.68 SS G_CDS: -2.72 Total: -36.40 kcal Total: -88.91 1.48 -87.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735420437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.220 kcal (2) G-P(sol) polarization free energy of solvation -88.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds