Wall clock time and date at job start Tue Mar 31 2020 10:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99385 * 2 1 4 4 C 1.50702 * 109.46727 * 269.99266 * 3 2 1 5 5 H 1.08002 * 120.00232 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99525 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99508 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00200 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47078 * 89.99891 * 8 6 4 10 10 H 1.48503 * 109.47021 * 209.99711 * 8 6 4 11 11 H 1.48501 * 109.47210 * 329.99831 * 8 6 4 12 12 C 1.38538 * 120.00480 * 179.97438 * 2 1 3 13 13 N 1.28223 * 124.89879 * 0.02562 * 12 2 1 14 14 N 1.38854 * 116.65170 * 179.97438 * 13 12 2 15 15 C 1.38332 * 139.63320 * 180.35231 * 14 13 12 16 16 C 1.35714 * 107.03884 * 180.02562 * 15 14 13 17 17 C 1.48335 * 126.01034 * 179.84826 * 16 15 14 18 18 C 1.39374 * 120.12719 * 359.43936 * 17 16 15 19 19 C 1.38001 * 119.87634 * 180.24988 * 18 17 16 20 20 C 1.38338 * 120.12252 * 0.02904 * 19 18 17 21 21 C 1.38328 * 120.25236 * 359.97438 * 20 19 18 22 22 C 1.38001 * 120.12517 * 359.97438 * 21 20 19 23 23 N 1.34540 * 107.97211 * 359.58813 * 16 15 14 24 24 C 1.32269 * 109.01337 * 0.25967 * 23 16 15 25 25 S 1.75751 * 124.90483 * 179.97438 * 12 2 1 26 26 H 1.08998 * 109.47580 * 270.00143 * 1 2 3 27 27 H 1.08997 * 109.47454 * 30.00644 * 1 2 3 28 28 H 1.09008 * 109.47057 * 150.00167 * 1 2 3 29 29 H 1.08993 * 109.47185 * 29.99982 * 3 2 1 30 30 H 1.08997 * 109.46868 * 149.99754 * 3 2 1 31 31 H 0.97008 * 119.99848 * 180.02562 * 7 6 4 32 32 H 1.08005 * 126.47820 * 359.91743 * 15 14 13 33 33 H 1.08005 * 120.06052 * 0.25296 * 18 17 16 34 34 H 1.08003 * 119.94024 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.86967 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.93483 * 179.97438 * 21 20 19 37 37 H 1.08005 * 120.06490 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1258 2.8780 -1.6728 7 7 3.3446 3.2578 -2.9127 8 14 3.7325 3.9295 -0.2530 9 1 5.1061 3.5086 0.1230 10 1 3.7473 5.3562 -0.6646 11 1 2.8265 3.7595 0.9113 12 6 2.1578 -1.1997 0.0005 13 7 1.6139 -2.3609 0.0006 14 7 2.4736 -3.4513 0.0006 15 6 2.4226 -4.8337 -0.0049 16 6 3.7046 -5.2790 0.0002 17 6 4.1347 -6.6986 0.0003 18 6 3.1839 -7.7176 0.0067 19 6 3.5898 -9.0366 0.0119 20 6 4.9377 -9.3481 0.0116 21 6 5.8858 -8.3409 0.0054 22 6 5.4913 -7.0184 -0.0010 23 7 4.5166 -4.2063 -0.0007 24 6 3.7797 -3.1079 -0.0005 25 16 3.9089 -1.3498 0.0000 26 1 -0.3634 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5138 29 1 1.6083 2.0284 0.5138 30 1 3.1497 1.1386 0.5139 31 1 3.8214 4.0838 -3.0900 32 1 1.5310 -5.4433 -0.0102 33 1 2.1313 -7.4755 0.0074 34 1 2.8539 -9.8271 0.0164 35 1 5.2508 -10.3817 0.0161 36 1 6.9367 -8.5899 0.0055 37 1 6.2324 -6.2328 -0.0063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756954953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:50 Heat of formation + Delta-G solvation = 163.886694 kcal Electronic energy + Delta-G solvation = -21996.210046 eV Core-core repulsion = 18674.806560 eV Total energy + Delta-G solvation = -3321.403486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.09832 -39.06472 -38.05601 -35.74644 -32.87998 -31.84314 -31.16395 -30.48202 -28.88122 -28.09701 -26.29023 -23.75091 -23.38460 -22.61283 -21.65758 -20.37166 -19.67657 -18.78118 -17.29216 -16.96772 -16.20387 -16.00502 -15.72605 -15.25530 -14.73136 -14.61377 -14.46222 -13.99495 -13.63323 -13.48057 -13.42167 -13.01303 -12.68031 -12.42401 -12.21928 -11.91417 -11.80280 -11.33831 -11.27420 -11.13758 -10.87400 -10.61984 -10.38281 -10.22885 -9.91658 -9.76676 -9.73101 -8.99337 -8.89649 -8.46712 -7.77766 -7.45644 -6.37641 -4.43322 0.80179 0.96363 1.36690 1.61776 1.66195 1.95092 2.39598 3.00018 3.07483 3.12531 3.17093 3.59134 3.96296 4.11521 4.35295 4.60033 4.87287 4.90215 4.91848 5.06764 5.23301 5.40837 5.48774 5.51337 5.67101 5.69775 5.82653 6.01012 6.01778 6.04257 6.18407 6.26006 6.31260 6.44283 6.54572 6.64534 6.92988 7.03421 7.15745 7.32752 7.74397 7.97723 8.16155 8.66040 9.17686 10.74438 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.002919 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.396453 B = 9589.993885 C =10179.122652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.537 5.537 3 C 0.219 3.781 4 C -0.554 4.554 5 H 0.083 0.917 6 C 0.083 3.917 7 N -0.881 5.881 8 Si 0.867 3.133 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.263 1.263 12 C 0.363 3.637 13 N -0.365 5.365 14 N -0.277 5.277 15 C 0.005 3.995 16 C 0.055 3.945 17 C 0.011 3.989 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.094 4.094 23 N -0.439 5.439 24 C 0.097 3.903 25 S 0.188 5.812 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.270 0.730 32 H 0.182 0.818 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -16.731 7.788 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.254 5.254 3 C 0.098 3.902 4 C -0.593 4.593 5 H 0.101 0.899 6 C -0.122 4.122 7 N -0.517 5.517 8 Si 0.693 3.307 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.188 1.188 12 C -0.022 4.022 13 N -0.200 5.200 14 N -0.047 5.047 15 C -0.134 4.134 16 C -0.078 4.078 17 C 0.009 3.991 18 C -0.130 4.130 19 C -0.138 4.138 20 C -0.144 4.144 21 C -0.138 4.138 22 C -0.113 4.113 23 N -0.163 5.163 24 C -0.273 4.273 25 S 0.422 5.578 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.200 0.800 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.230 -15.846 7.668 17.605 hybrid contribution -0.894 0.153 0.463 1.019 sum -1.124 -15.693 8.131 17.710 Atomic orbital electron populations 1.21756 0.77635 1.03838 1.01315 1.46385 1.05936 1.00268 1.72767 1.20107 0.91750 0.78862 0.99449 1.21271 1.39013 1.08413 0.90557 0.89914 1.24825 0.94807 0.96948 0.95667 1.69868 1.39763 1.23372 1.18699 0.86990 0.80367 0.80625 0.82751 1.19332 1.20425 1.18785 1.24299 0.94062 0.90120 0.93710 1.74183 1.14043 0.91445 1.40319 1.47174 1.03259 1.05162 1.49104 1.22308 0.99958 0.78006 1.13113 1.18928 0.88244 0.92135 1.08503 1.17746 0.93451 0.87950 0.99940 1.21092 0.99066 0.92199 1.00684 1.20994 0.96020 0.95923 1.00822 1.21178 0.93229 0.99159 1.00834 1.21101 0.99586 0.92617 1.00543 1.21270 0.95280 0.96604 0.98138 1.70476 1.30890 0.94213 1.20673 1.26797 0.84908 1.01354 1.14198 1.85971 0.99901 0.87798 1.84087 0.92903 0.89668 0.91079 0.92835 0.95238 0.91968 0.80044 0.85831 0.85944 0.86264 0.85962 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.50 10.55 59.85 0.63 2.13 16 2 N -0.54 -10.09 2.96 -184.20 -0.55 -10.64 16 3 C 0.22 4.50 4.22 -5.19 -0.02 4.48 16 4 C -0.55 -13.87 9.94 -34.44 -0.34 -14.21 16 5 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 6 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.88 -24.74 13.96 55.43 0.77 -23.97 16 8 Si 0.87 18.78 27.47 -169.99 -4.67 14.11 16 9 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.26 -5.28 6.54 56.52 0.37 -4.92 16 12 C 0.36 7.02 7.92 -88.93 -0.70 6.31 16 13 N -0.37 -7.02 11.22 30.48 0.34 -6.67 16 14 N -0.28 -5.22 4.38 -12.23 -0.05 -5.27 16 15 C 0.01 0.09 11.42 -15.52 -0.18 -0.09 16 16 C 0.06 0.91 6.84 -83.43 -0.57 0.34 16 17 C 0.01 0.14 5.88 -104.89 -0.62 -0.47 16 18 C -0.11 -1.22 9.56 -39.25 -0.38 -1.59 16 19 C -0.12 -1.12 10.03 -39.63 -0.40 -1.52 16 20 C -0.13 -1.16 10.04 -39.51 -0.40 -1.56 16 21 C -0.12 -1.24 10.03 -39.64 -0.40 -1.64 16 22 C -0.09 -1.21 9.70 -39.24 -0.38 -1.59 16 23 N -0.44 -8.30 11.00 -10.08 -0.11 -8.41 16 24 C 0.10 1.90 8.98 -88.88 -0.80 1.10 16 25 S 0.19 3.59 21.90 -107.50 -2.35 1.23 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 28 H 0.07 1.06 7.61 -51.92 -0.40 0.67 16 29 H 0.05 1.04 7.13 -51.93 -0.37 0.67 16 30 H 0.03 0.60 6.49 -51.93 -0.34 0.27 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 32 H 0.18 2.18 7.27 -52.48 -0.38 1.80 16 33 H 0.12 1.11 7.00 -52.48 -0.37 0.74 16 34 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.13 1.75 7.86 -52.48 -0.41 1.34 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -30.01 334.33 -10.19 -40.20 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -3.96 Total: 0.64 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -4.64 Total: -6.26 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.41 Total: -54.96 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.67 Total: 14.11 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -2.35 Total: 1.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.01 -10.19 -40.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756954953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.088 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds