Wall clock time and date at job start Tue Mar 31 2020 10:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99385 * 2 1 4 4 C 1.50702 * 109.46727 * 269.99266 * 3 2 1 5 5 H 1.08002 * 120.00232 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99525 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99508 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00200 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47078 * 89.99891 * 8 6 4 10 10 H 1.48503 * 109.47021 * 209.99711 * 8 6 4 11 11 H 1.48501 * 109.47210 * 329.99831 * 8 6 4 12 12 C 1.38538 * 120.00480 * 179.97438 * 2 1 3 13 13 N 1.28223 * 124.89879 * 0.02562 * 12 2 1 14 14 N 1.38854 * 116.65170 * 179.97438 * 13 12 2 15 15 C 1.38332 * 139.63320 * 180.35231 * 14 13 12 16 16 C 1.35714 * 107.03884 * 180.02562 * 15 14 13 17 17 C 1.48335 * 126.01034 * 179.84826 * 16 15 14 18 18 C 1.39374 * 120.12719 * 359.43936 * 17 16 15 19 19 C 1.38001 * 119.87634 * 180.24988 * 18 17 16 20 20 C 1.38338 * 120.12252 * 0.02904 * 19 18 17 21 21 C 1.38328 * 120.25236 * 359.97438 * 20 19 18 22 22 C 1.38001 * 120.12517 * 359.97438 * 21 20 19 23 23 N 1.34540 * 107.97211 * 359.58813 * 16 15 14 24 24 C 1.32269 * 109.01337 * 0.25967 * 23 16 15 25 25 S 1.75751 * 124.90483 * 179.97438 * 12 2 1 26 26 H 1.08998 * 109.47580 * 270.00143 * 1 2 3 27 27 H 1.08997 * 109.47454 * 30.00644 * 1 2 3 28 28 H 1.09008 * 109.47057 * 150.00167 * 1 2 3 29 29 H 1.08993 * 109.47185 * 29.99982 * 3 2 1 30 30 H 1.08997 * 109.46868 * 149.99754 * 3 2 1 31 31 H 0.97008 * 119.99848 * 180.02562 * 7 6 4 32 32 H 1.08005 * 126.47820 * 359.91743 * 15 14 13 33 33 H 1.08005 * 120.06052 * 0.25296 * 18 17 16 34 34 H 1.08003 * 119.94024 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.86967 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.93483 * 179.97438 * 21 20 19 37 37 H 1.08005 * 120.06490 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1258 2.8780 -1.6728 7 7 3.3446 3.2578 -2.9127 8 14 3.7325 3.9295 -0.2530 9 1 5.1061 3.5086 0.1230 10 1 3.7473 5.3562 -0.6646 11 1 2.8265 3.7595 0.9113 12 6 2.1578 -1.1997 0.0005 13 7 1.6139 -2.3609 0.0006 14 7 2.4736 -3.4513 0.0006 15 6 2.4226 -4.8337 -0.0049 16 6 3.7046 -5.2790 0.0002 17 6 4.1347 -6.6986 0.0003 18 6 3.1839 -7.7176 0.0067 19 6 3.5898 -9.0366 0.0119 20 6 4.9377 -9.3481 0.0116 21 6 5.8858 -8.3409 0.0054 22 6 5.4913 -7.0184 -0.0010 23 7 4.5166 -4.2063 -0.0007 24 6 3.7797 -3.1079 -0.0005 25 16 3.9089 -1.3498 0.0000 26 1 -0.3634 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5138 29 1 1.6083 2.0284 0.5138 30 1 3.1497 1.1386 0.5139 31 1 3.8214 4.0838 -3.0900 32 1 1.5310 -5.4433 -0.0102 33 1 2.1313 -7.4755 0.0074 34 1 2.8539 -9.8271 0.0164 35 1 5.2508 -10.3817 0.0161 36 1 6.9367 -8.5899 0.0055 37 1 6.2324 -6.2328 -0.0063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756954953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:49 Heat of formation + Delta-G solvation = 148.245875 kcal Electronic energy + Delta-G solvation = -21996.888283 eV Core-core repulsion = 18674.806560 eV Total energy + Delta-G solvation = -3322.081723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.45449 -40.03187 -39.38522 -37.18721 -34.76503 -32.89359 -32.27247 -31.60489 -30.49477 -29.28872 -27.73413 -25.28190 -24.53093 -23.75477 -22.90285 -21.57287 -20.97826 -20.20442 -19.20327 -18.03561 -17.44817 -17.43163 -17.08925 -16.43855 -16.15573 -15.84567 -15.69259 -15.31322 -15.01533 -14.50013 -14.43337 -14.20468 -14.03642 -13.95715 -13.38229 -13.30424 -13.27805 -12.88911 -12.53420 -12.18872 -12.15203 -12.01970 -11.80747 -11.72224 -11.70526 -11.14561 -11.07239 -10.85579 -9.80043 -9.63515 -9.22997 -8.76810 -8.35810 -6.46366 -0.64602 -0.09942 0.19287 0.33801 0.55881 0.56547 0.95275 1.38840 1.40310 1.48137 1.84624 2.18544 2.29788 2.97324 3.06291 3.06356 3.45316 3.96655 4.14094 4.19090 4.19998 4.27646 4.38533 4.51097 4.58286 4.61950 4.70271 4.73103 4.81362 4.88407 4.96160 5.21350 5.25319 5.28150 5.52166 5.62816 5.66547 5.69258 5.89239 6.12932 6.15705 6.39601 6.58226 6.62458 7.18906 8.80206 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.002919 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.396453 B = 9589.993885 C =10179.122652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.542 5.542 3 C 0.224 3.776 4 C -0.550 4.550 5 H 0.035 0.965 6 C 0.025 3.975 7 N -0.937 5.937 8 Si 0.932 3.068 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.229 1.229 12 C 0.356 3.644 13 N -0.366 5.366 14 N -0.286 5.286 15 C 0.006 3.994 16 C 0.053 3.947 17 C -0.021 4.021 18 C -0.111 4.111 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.115 4.115 23 N -0.459 5.459 24 C 0.071 3.929 25 S 0.172 5.828 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.271 0.729 32 H 0.221 0.779 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.053 -18.943 9.835 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.259 5.259 3 C 0.103 3.897 4 C -0.589 4.589 5 H 0.053 0.947 6 C -0.176 4.176 7 N -0.575 5.575 8 Si 0.754 3.246 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.151 1.151 12 C -0.029 4.029 13 N -0.201 5.201 14 N -0.058 5.058 15 C -0.132 4.132 16 C -0.080 4.080 17 C -0.023 4.023 18 C -0.130 4.130 19 C -0.135 4.135 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.134 4.134 23 N -0.184 5.184 24 C -0.298 4.298 25 S 0.406 5.594 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.237 0.763 33 H 0.161 0.839 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.160 0.840 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.188 -18.095 9.734 20.582 hybrid contribution -0.600 0.560 -0.253 0.858 sum -1.788 -17.535 9.481 20.015 Atomic orbital electron populations 1.21968 0.75550 1.03957 1.03258 1.46436 1.07115 0.99518 1.72850 1.19949 0.92952 0.80196 0.96603 1.21415 1.38089 1.07601 0.91773 0.94713 1.25751 0.94965 0.98502 0.98345 1.70033 1.41658 1.24317 1.21529 0.85941 0.80419 0.78084 0.80134 1.18974 1.20713 1.15144 1.24398 0.93958 0.90463 0.94048 1.74077 1.14370 0.91516 1.40114 1.47397 1.02898 1.05893 1.49644 1.23033 1.01250 0.77129 1.11769 1.19509 0.88226 0.92888 1.07350 1.17883 0.94463 0.87047 1.02887 1.21364 0.99538 0.92304 0.99760 1.21421 0.96923 0.95938 0.99221 1.21621 0.93028 1.00390 0.98549 1.21358 1.01165 0.91724 0.99978 1.21285 0.94891 0.97557 0.99638 1.70452 1.31928 0.94938 1.21051 1.26773 0.85542 1.01367 1.16113 1.85808 1.00518 0.88634 1.84457 0.89912 0.89365 0.91183 0.90327 0.94398 0.91999 0.76291 0.83922 0.82675 0.83072 0.84005 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.77 10.55 127.77 1.35 4.12 16 2 N -0.54 -20.02 2.96 -736.67 -2.18 -22.20 16 3 C 0.22 8.98 4.22 85.63 0.36 9.35 16 4 C -0.55 -28.07 9.94 25.60 0.25 -27.82 16 5 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 6 C 0.02 1.29 5.47 84.66 0.46 1.75 16 7 N -0.94 -54.49 13.96 21.45 0.30 -54.20 16 8 Si 0.93 38.08 27.47 68.60 1.88 39.97 16 9 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 10 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.23 -8.03 6.54 99.48 0.65 -7.37 16 12 C 0.36 13.82 7.92 179.76 1.42 15.24 16 13 N -0.37 -14.00 11.22 -57.47 -0.64 -14.64 16 14 N -0.29 -10.81 4.38 -192.62 -0.84 -11.65 16 15 C 0.01 0.18 11.42 83.08 0.95 1.13 16 16 C 0.05 1.75 6.84 40.83 0.28 2.03 16 17 C -0.02 -0.57 5.88 -20.04 -0.12 -0.69 16 18 C -0.11 -2.14 9.56 22.49 0.21 -1.93 16 19 C -0.12 -1.74 10.03 22.24 0.22 -1.52 16 20 C -0.12 -1.75 10.04 22.31 0.22 -1.52 16 21 C -0.12 -2.33 10.03 22.23 0.22 -2.11 16 22 C -0.11 -2.93 9.70 22.49 0.22 -2.72 16 23 N -0.46 -17.91 11.00 -185.81 -2.04 -19.95 16 24 C 0.07 2.84 8.98 179.74 1.61 4.45 16 25 S 0.17 6.73 21.90 -56.49 -1.24 5.49 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.09 2.47 8.07 -2.39 -0.02 2.46 16 28 H 0.07 2.03 7.61 -2.38 -0.02 2.01 16 29 H 0.08 2.81 7.13 -2.39 -0.02 2.80 16 30 H 0.04 1.49 6.49 -2.39 -0.02 1.47 16 31 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 32 H 0.22 4.73 7.27 -2.91 -0.02 4.71 16 33 H 0.14 2.09 7.00 -2.91 -0.02 2.07 16 34 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 35 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 36 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.11 3.18 7.86 -2.91 -0.02 3.16 16 Total: -1.00 -68.47 334.33 3.96 -64.51 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.05 Total: 12.90 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 7.68 Total: -0.23 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -5.41 Total: -122.64 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 1.88 Total: 39.97 kcal Atomic # 16 Polarization: 6.73 SS G_CDS: -1.24 Total: 5.49 kcal Total: -68.47 3.96 -64.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756954953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.760 kcal (2) G-P(sol) polarization free energy of solvation -68.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds