Wall clock time and date at job start Tue Mar 31 2020 10:13:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52994 * 109.47067 * 2 1
4 4 C 1.52994 * 109.47264 * 120.00506 * 2 1 3
5 5 N 1.46497 * 109.47445 * 65.00157 * 4 2 1
6 6 C 1.46500 * 119.99883 * 262.81342 * 5 4 2
7 7 C 1.50696 * 109.47271 * 269.99492 * 6 5 4
8 8 H 1.08000 * 120.00050 * 0.02562 * 7 6 5
9 9 C 1.37880 * 120.00174 * 179.97438 * 7 6 5
10 10 N 1.31511 * 119.99970 * 180.02562 * 9 7 6
11 11 Si 1.86797 * 119.99871 * 0.02562 * 9 7 6
12 12 H 1.48497 * 109.46945 * 90.00106 * 11 9 7
13 13 H 1.48503 * 109.47285 * 209.99934 * 11 9 7
14 14 H 1.48499 * 109.47330 * 330.00166 * 11 9 7
15 15 C 1.34772 * 120.00313 * 82.80710 * 5 4 2
16 16 O 1.21543 * 120.00404 * 183.83539 * 15 5 4
17 17 C 1.47998 * 120.00045 * 3.84533 * 15 5 4
18 18 N 1.32843 * 119.73996 * 353.94336 * 17 15 5
19 19 C 1.31523 * 121.64918 * 180.02562 * 18 17 15
20 20 Cl 1.73591 * 119.53158 * 179.97438 * 19 18 17
21 21 C 1.38850 * 120.94357 * 359.97438 * 19 18 17
22 22 C 1.38400 * 119.37902 * 359.76470 * 21 19 18
23 23 C 1.38988 * 118.48768 * 0.47577 * 22 21 19
24 24 F 1.35098 * 120.48657 * 179.80038 * 23 22 21
25 25 H 1.09002 * 109.47311 * 59.99672 * 1 2 3
26 26 H 1.09005 * 109.46751 * 179.97438 * 1 2 3
27 27 H 1.08999 * 109.46901 * 299.99267 * 1 2 3
28 28 H 1.09010 * 109.47077 * 240.00255 * 2 1 3
29 29 H 1.09004 * 109.47057 * 179.97438 * 3 2 1
30 30 H 1.08996 * 109.47976 * 300.00492 * 3 2 1
31 31 H 1.09003 * 109.47140 * 60.00559 * 3 2 1
32 32 H 1.09003 * 109.47354 * 304.99934 * 4 2 1
33 33 H 1.09000 * 109.47365 * 184.99833 * 4 2 1
34 34 H 1.09002 * 109.47170 * 29.99782 * 6 5 4
35 35 H 1.09003 * 109.47263 * 149.99304 * 6 5 4
36 36 H 0.97005 * 120.00200 * 179.97438 * 10 9 7
37 37 H 1.07991 * 120.30703 * 179.97438 * 21 19 18
38 38 H 1.08009 * 120.75235 * 180.27429 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 1.2491
5 7 1.6526 -2.1329 1.1904
6 6 0.4542 -2.5935 1.8961
7 6 0.8254 -3.0144 3.2946
8 1 1.8513 -2.9453 3.6250
9 6 -0.1448 -3.4867 4.1529
10 7 0.1791 -3.8535 5.3736
11 14 -1.9194 -3.6056 3.5818
12 1 -2.1562 -4.9409 2.9768
13 1 -2.8266 -3.4202 4.7428
14 1 -2.1861 -2.5502 2.5718
15 6 2.3984 -3.0078 0.4871
16 8 2.0397 -4.1642 0.3804
17 6 3.6545 -2.5605 -0.1553
18 7 3.9811 -1.2730 -0.1385
19 6 5.0876 -0.8343 -0.6979
20 17 5.4601 0.8603 -0.6440
21 6 5.9622 -1.7074 -1.3311
22 6 5.6647 -3.0585 -1.3680
23 6 4.4864 -3.4943 -0.7735
24 9 4.1542 -4.8038 -0.7895
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3633 0.5137 0.8901
28 1 1.8934 -0.5138 -0.8901
29 1 3.1300 1.4424 0.0005
30 1 1.6767 1.9564 -0.8899
31 1 1.6767 1.9563 0.8901
32 1 1.6054 -0.2619 2.1369
33 1 3.1263 -0.6445 1.2950
34 1 -0.2744 -1.7840 1.9415
35 1 0.0225 -3.4413 1.3640
36 1 -0.5036 -4.1855 5.9775
37 1 6.8677 -1.3360 -1.7874
38 1 6.3314 -3.7578 -1.8507
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000758774853.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:13:56
Heat of formation + Delta-G solvation = -32.039741 kcal
Electronic energy + Delta-G solvation = -24872.052089 eV
Core-core repulsion = 21077.046913 eV
Total energy + Delta-G solvation = -3795.005176 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.094 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-48.97697 -40.76166 -38.76830 -36.90539 -36.41249 -33.63032 -33.14290 -32.19735
-31.00468 -28.37965 -26.81875 -25.82164 -24.78783 -23.77858 -22.31095 -20.24684
-19.43337 -17.96428 -17.56237 -17.12359 -16.93531 -16.09666 -15.78827 -15.52943
-14.69683 -14.65375 -14.25591 -14.15669 -13.87917 -13.59053 -13.42118 -13.15274
-12.95392 -12.51833 -12.23049 -12.04139 -11.79883 -11.78038 -11.69394 -11.29108
-11.02634 -10.90072 -10.61877 -10.55166 -10.40791 -10.15398 -10.12223 -9.78045
-9.47296 -9.05427 -9.04272 -8.57828 -7.68625 -6.08057 -4.07085 0.25763
0.60070 1.45264 2.76495 3.29643 3.34319 3.37617 3.40980 3.73900
3.84841 4.02950 4.35436 4.40245 4.45878 4.78925 5.02472 5.23778
5.26294 5.33052 5.33513 5.38243 5.54248 5.89001 5.98523 6.02672
6.06052 6.15324 6.29593 6.36728 6.47870 6.65250 6.74556 6.75714
6.92086 7.13136 7.35049 7.60271 8.14929 8.44782 8.76896 8.95709
9.51589 11.05229
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.014815 B = 0.005252 C = 0.004356
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1889.581073 B = 5330.422491 C = 6426.409380
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.097 4.097
3 C -0.143 4.143
4 C 0.107 3.893
5 N -0.560 5.560
6 C 0.213 3.787
7 C -0.530 4.530
8 H 0.075 0.925
9 C 0.074 3.926
10 N -0.896 5.896
11 Si 0.874 3.126
12 H -0.273 1.273
13 H -0.284 1.284
14 H -0.265 1.265
15 C 0.554 3.446
16 O -0.521 6.521
17 C 0.081 3.919
18 N -0.409 5.409
19 C 0.149 3.851
20 Cl -0.018 7.018
21 C -0.111 4.111
22 C -0.107 4.107
23 C 0.112 3.888
24 F -0.097 7.097
25 H 0.045 0.955
26 H 0.057 0.943
27 H 0.055 0.945
28 H 0.063 0.937
29 H 0.061 0.939
30 H 0.047 0.953
31 H 0.052 0.948
32 H 0.075 0.925
33 H 0.106 0.894
34 H 0.038 0.962
35 H 0.038 0.962
36 H 0.265 0.735
37 H 0.157 0.843
38 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.772 9.873 -15.844 22.070
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.116 4.116
3 C -0.201 4.201
4 C -0.017 4.017
5 N -0.288 5.288
6 C 0.093 3.907
7 C -0.568 4.568
8 H 0.093 0.907
9 C -0.128 4.128
10 N -0.535 5.535
11 Si 0.701 3.299
12 H -0.198 1.198
13 H -0.210 1.210
14 H -0.189 1.189
15 C 0.338 3.662
16 O -0.397 6.397
17 C -0.059 4.059
18 N -0.123 5.123
19 C -0.017 4.017
20 Cl 0.011 6.989
21 C -0.132 4.132
22 C -0.133 4.133
23 C 0.089 3.911
24 F -0.075 7.075
25 H 0.064 0.936
26 H 0.076 0.924
27 H 0.074 0.926
28 H 0.082 0.918
29 H 0.080 0.920
30 H 0.066 0.934
31 H 0.071 0.929
32 H 0.094 0.906
33 H 0.124 0.876
34 H 0.056 0.944
35 H 0.056 0.944
36 H 0.075 0.925
37 H 0.175 0.825
38 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges 10.891 9.851 -15.266 21.183
hybrid contribution -0.357 -0.657 -0.452 0.874
sum 10.534 9.194 -15.718 21.037
Atomic orbital electron populations
1.21939 0.95820 1.02065 1.00949 1.21354 0.95199 0.96070 0.99025
1.21791 1.01716 0.95547 1.00997 1.22138 1.02379 0.80031 0.97113
1.47795 1.26388 1.07972 1.46653 1.19842 0.82408 0.95747 0.92700
1.21305 0.97187 1.43485 0.94842 0.90698 1.24827 0.98804 0.94506
0.94686 1.69892 1.33964 1.43496 1.06103 0.86882 0.85068 0.79400
0.78593 1.19845 1.21023 1.18927 1.17479 0.82488 0.85779 0.80431
1.90842 1.70251 1.17200 1.61372 1.21842 0.97503 0.87556 0.98986
1.67876 1.15779 1.14499 1.14130 1.21882 0.93182 0.88305 0.98349
1.98415 1.92494 1.11032 1.97005 1.21879 1.00442 0.91931 0.98992
1.21657 0.95724 0.96521 0.99403 1.18665 0.94427 0.80021 0.98020
1.91659 1.91885 1.30439 1.93556 0.93608 0.92380 0.92632 0.91832
0.91972 0.93437 0.92936 0.90643 0.87627 0.94412 0.94426 0.92537
0.82543 0.81947
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.27 8.39 37.16 0.31 -1.96 16
2 C -0.10 -1.43 2.38 -90.62 -0.22 -1.65 16
3 C -0.14 -1.73 9.19 37.15 0.34 -1.39 16
4 C 0.11 1.87 4.41 -4.05 -0.02 1.86 16
5 N -0.56 -12.00 2.17 -176.12 -0.38 -12.38 16
6 C 0.21 5.26 3.35 -5.20 -0.02 5.24 16
7 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16
8 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16
9 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16
10 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16
11 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16
12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16
13 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16
14 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16
15 C 0.55 11.92 7.58 -12.26 -0.09 11.83 16
16 O -0.52 -13.01 14.89 5.33 0.08 -12.93 16
17 C 0.08 1.36 6.49 -82.96 -0.54 0.82 16
18 N -0.41 -5.85 4.48 -6.90 -0.03 -5.88 16
19 C 0.15 1.66 7.27 -17.46 -0.13 1.53 16
20 Cl -0.02 -0.17 27.12 -51.86 -1.41 -1.58 16
21 C -0.11 -0.94 9.88 -39.30 -0.39 -1.33 16
22 C -0.11 -1.01 10.16 -39.24 -0.40 -1.41 16
23 C 0.11 1.62 7.31 -38.83 -0.28 1.33 16
24 F -0.10 -1.64 15.57 2.25 0.04 -1.60 16
25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
26 H 0.06 1.00 6.45 -51.93 -0.34 0.66 16
27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
28 H 0.06 0.98 7.00 -51.92 -0.36 0.62 16
29 H 0.06 0.72 6.01 -51.93 -0.31 0.41 16
30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
32 H 0.08 1.38 8.02 -51.93 -0.42 0.96 16
33 H 0.11 1.78 5.16 -53.44 -0.28 1.51 16
34 H 0.04 0.89 5.86 -51.93 -0.30 0.58 16
35 H 0.04 0.99 6.80 -51.93 -0.35 0.63 16
36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16
37 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16
38 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16
LS Contribution 328.58 15.07 4.95 4.95
Total: -1.00 -33.42 328.58 -7.00 -40.42
By element:
Atomic # 1 Polarization: 2.18 SS G_CDS: -4.49 Total: -2.30 kcal
Atomic # 6 Polarization: 3.15 SS G_CDS: -1.87 Total: 1.28 kcal
Atomic # 7 Polarization: -45.59 SS G_CDS: 0.36 Total: -45.23 kcal
Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal
Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal
Atomic # 17 Polarization: -0.17 SS G_CDS: -1.41 Total: -1.58 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -33.42 -7.00 -40.42 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000758774853.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.383 kcal
(2) G-P(sol) polarization free energy of solvation -33.421 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.038 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.040 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds