Wall clock time and date at job start Tue Mar 31 2020 10:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47067 * 2 1 4 4 C 1.52994 * 109.47264 * 120.00506 * 2 1 3 5 5 N 1.46497 * 109.47445 * 65.00157 * 4 2 1 6 6 C 1.46500 * 119.99883 * 262.81342 * 5 4 2 7 7 C 1.50696 * 109.47271 * 269.99492 * 6 5 4 8 8 H 1.08000 * 120.00050 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00174 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99970 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99871 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.46945 * 90.00106 * 11 9 7 13 13 H 1.48503 * 109.47285 * 209.99934 * 11 9 7 14 14 H 1.48499 * 109.47330 * 330.00166 * 11 9 7 15 15 C 1.34772 * 120.00313 * 82.80710 * 5 4 2 16 16 O 1.21543 * 120.00404 * 183.83539 * 15 5 4 17 17 C 1.47998 * 120.00045 * 3.84533 * 15 5 4 18 18 N 1.32843 * 119.73996 * 353.94336 * 17 15 5 19 19 C 1.31523 * 121.64918 * 180.02562 * 18 17 15 20 20 Cl 1.73591 * 119.53158 * 179.97438 * 19 18 17 21 21 C 1.38850 * 120.94357 * 359.97438 * 19 18 17 22 22 C 1.38400 * 119.37902 * 359.76470 * 21 19 18 23 23 C 1.38988 * 118.48768 * 0.47577 * 22 21 19 24 24 F 1.35098 * 120.48657 * 179.80038 * 23 22 21 25 25 H 1.09002 * 109.47311 * 59.99672 * 1 2 3 26 26 H 1.09005 * 109.46751 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46901 * 299.99267 * 1 2 3 28 28 H 1.09010 * 109.47077 * 240.00255 * 2 1 3 29 29 H 1.09004 * 109.47057 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47976 * 300.00492 * 3 2 1 31 31 H 1.09003 * 109.47140 * 60.00559 * 3 2 1 32 32 H 1.09003 * 109.47354 * 304.99934 * 4 2 1 33 33 H 1.09000 * 109.47365 * 184.99833 * 4 2 1 34 34 H 1.09002 * 109.47170 * 29.99782 * 6 5 4 35 35 H 1.09003 * 109.47263 * 149.99304 * 6 5 4 36 36 H 0.97005 * 120.00200 * 179.97438 * 10 9 7 37 37 H 1.07991 * 120.30703 * 179.97438 * 21 19 18 38 38 H 1.08009 * 120.75235 * 180.27429 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6526 -2.1329 1.1904 6 6 0.4542 -2.5935 1.8961 7 6 0.8254 -3.0144 3.2946 8 1 1.8513 -2.9453 3.6250 9 6 -0.1448 -3.4867 4.1529 10 7 0.1791 -3.8535 5.3736 11 14 -1.9194 -3.6056 3.5818 12 1 -2.1562 -4.9409 2.9768 13 1 -2.8266 -3.4202 4.7428 14 1 -2.1861 -2.5502 2.5718 15 6 2.3984 -3.0078 0.4871 16 8 2.0397 -4.1642 0.3804 17 6 3.6545 -2.5605 -0.1553 18 7 3.9811 -1.2730 -0.1385 19 6 5.0876 -0.8343 -0.6979 20 17 5.4601 0.8603 -0.6440 21 6 5.9622 -1.7074 -1.3311 22 6 5.6647 -3.0585 -1.3680 23 6 4.4864 -3.4943 -0.7735 24 9 4.1542 -4.8038 -0.7895 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6054 -0.2619 2.1369 33 1 3.1263 -0.6445 1.2950 34 1 -0.2744 -1.7840 1.9415 35 1 0.0225 -3.4413 1.3640 36 1 -0.5036 -4.1855 5.9775 37 1 6.8677 -1.3360 -1.7874 38 1 6.3314 -3.7578 -1.8507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758774853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:56 Heat of formation + Delta-G solvation = -32.039741 kcal Electronic energy + Delta-G solvation = -24872.052089 eV Core-core repulsion = 21077.046913 eV Total energy + Delta-G solvation = -3795.005176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.97697 -40.76166 -38.76830 -36.90539 -36.41249 -33.63032 -33.14290 -32.19735 -31.00468 -28.37965 -26.81875 -25.82164 -24.78783 -23.77858 -22.31095 -20.24684 -19.43337 -17.96428 -17.56237 -17.12359 -16.93531 -16.09666 -15.78827 -15.52943 -14.69683 -14.65375 -14.25591 -14.15669 -13.87917 -13.59053 -13.42118 -13.15274 -12.95392 -12.51833 -12.23049 -12.04139 -11.79883 -11.78038 -11.69394 -11.29108 -11.02634 -10.90072 -10.61877 -10.55166 -10.40791 -10.15398 -10.12223 -9.78045 -9.47296 -9.05427 -9.04272 -8.57828 -7.68625 -6.08057 -4.07085 0.25763 0.60070 1.45264 2.76495 3.29643 3.34319 3.37617 3.40980 3.73900 3.84841 4.02950 4.35436 4.40245 4.45878 4.78925 5.02472 5.23778 5.26294 5.33052 5.33513 5.38243 5.54248 5.89001 5.98523 6.02672 6.06052 6.15324 6.29593 6.36728 6.47870 6.65250 6.74556 6.75714 6.92086 7.13136 7.35049 7.60271 8.14929 8.44782 8.76896 8.95709 9.51589 11.05229 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.005252 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.581073 B = 5330.422491 C = 6426.409380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.143 4.143 4 C 0.107 3.893 5 N -0.560 5.560 6 C 0.213 3.787 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.074 3.926 10 N -0.896 5.896 11 Si 0.874 3.126 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.554 3.446 16 O -0.521 6.521 17 C 0.081 3.919 18 N -0.409 5.409 19 C 0.149 3.851 20 Cl -0.018 7.018 21 C -0.111 4.111 22 C -0.107 4.107 23 C 0.112 3.888 24 F -0.097 7.097 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.265 0.735 37 H 0.157 0.843 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.772 9.873 -15.844 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.017 4.017 5 N -0.288 5.288 6 C 0.093 3.907 7 C -0.568 4.568 8 H 0.093 0.907 9 C -0.128 4.128 10 N -0.535 5.535 11 Si 0.701 3.299 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.189 1.189 15 C 0.338 3.662 16 O -0.397 6.397 17 C -0.059 4.059 18 N -0.123 5.123 19 C -0.017 4.017 20 Cl 0.011 6.989 21 C -0.132 4.132 22 C -0.133 4.133 23 C 0.089 3.911 24 F -0.075 7.075 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.175 0.825 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.891 9.851 -15.266 21.183 hybrid contribution -0.357 -0.657 -0.452 0.874 sum 10.534 9.194 -15.718 21.037 Atomic orbital electron populations 1.21939 0.95820 1.02065 1.00949 1.21354 0.95199 0.96070 0.99025 1.21791 1.01716 0.95547 1.00997 1.22138 1.02379 0.80031 0.97113 1.47795 1.26388 1.07972 1.46653 1.19842 0.82408 0.95747 0.92700 1.21305 0.97187 1.43485 0.94842 0.90698 1.24827 0.98804 0.94506 0.94686 1.69892 1.33964 1.43496 1.06103 0.86882 0.85068 0.79400 0.78593 1.19845 1.21023 1.18927 1.17479 0.82488 0.85779 0.80431 1.90842 1.70251 1.17200 1.61372 1.21842 0.97503 0.87556 0.98986 1.67876 1.15779 1.14499 1.14130 1.21882 0.93182 0.88305 0.98349 1.98415 1.92494 1.11032 1.97005 1.21879 1.00442 0.91931 0.98992 1.21657 0.95724 0.96521 0.99403 1.18665 0.94427 0.80021 0.98020 1.91659 1.91885 1.30439 1.93556 0.93608 0.92380 0.92632 0.91832 0.91972 0.93437 0.92936 0.90643 0.87627 0.94412 0.94426 0.92537 0.82543 0.81947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.39 37.16 0.31 -1.96 16 2 C -0.10 -1.43 2.38 -90.62 -0.22 -1.65 16 3 C -0.14 -1.73 9.19 37.15 0.34 -1.39 16 4 C 0.11 1.87 4.41 -4.05 -0.02 1.86 16 5 N -0.56 -12.00 2.17 -176.12 -0.38 -12.38 16 6 C 0.21 5.26 3.35 -5.20 -0.02 5.24 16 7 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 8 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 9 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 10 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 11 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 15 C 0.55 11.92 7.58 -12.26 -0.09 11.83 16 16 O -0.52 -13.01 14.89 5.33 0.08 -12.93 16 17 C 0.08 1.36 6.49 -82.96 -0.54 0.82 16 18 N -0.41 -5.85 4.48 -6.90 -0.03 -5.88 16 19 C 0.15 1.66 7.27 -17.46 -0.13 1.53 16 20 Cl -0.02 -0.17 27.12 -51.86 -1.41 -1.58 16 21 C -0.11 -0.94 9.88 -39.30 -0.39 -1.33 16 22 C -0.11 -1.01 10.16 -39.24 -0.40 -1.41 16 23 C 0.11 1.62 7.31 -38.83 -0.28 1.33 16 24 F -0.10 -1.64 15.57 2.25 0.04 -1.60 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.00 6.45 -51.93 -0.34 0.66 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.98 7.00 -51.92 -0.36 0.62 16 29 H 0.06 0.72 6.01 -51.93 -0.31 0.41 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.38 8.02 -51.93 -0.42 0.96 16 33 H 0.11 1.78 5.16 -53.44 -0.28 1.51 16 34 H 0.04 0.89 5.86 -51.93 -0.30 0.58 16 35 H 0.04 0.99 6.80 -51.93 -0.35 0.63 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 328.58 15.07 4.95 4.95 Total: -1.00 -33.42 328.58 -7.00 -40.42 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -4.49 Total: -2.30 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.87 Total: 1.28 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.36 Total: -45.23 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.41 Total: -1.58 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.42 -7.00 -40.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758774853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.383 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds