Wall clock time and date at job start Tue Mar 31 2020 10:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47067 * 2 1 4 4 C 1.52994 * 109.47264 * 120.00506 * 2 1 3 5 5 N 1.46497 * 109.47445 * 65.00157 * 4 2 1 6 6 C 1.46500 * 119.99883 * 262.81342 * 5 4 2 7 7 C 1.50696 * 109.47271 * 269.99492 * 6 5 4 8 8 H 1.08000 * 120.00050 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00174 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99970 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99871 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.46945 * 90.00106 * 11 9 7 13 13 H 1.48503 * 109.47285 * 209.99934 * 11 9 7 14 14 H 1.48499 * 109.47330 * 330.00166 * 11 9 7 15 15 C 1.34772 * 120.00313 * 82.80710 * 5 4 2 16 16 O 1.21543 * 120.00404 * 183.83539 * 15 5 4 17 17 C 1.47998 * 120.00045 * 3.84533 * 15 5 4 18 18 N 1.32843 * 119.73996 * 353.94336 * 17 15 5 19 19 C 1.31523 * 121.64918 * 180.02562 * 18 17 15 20 20 Cl 1.73591 * 119.53158 * 179.97438 * 19 18 17 21 21 C 1.38850 * 120.94357 * 359.97438 * 19 18 17 22 22 C 1.38400 * 119.37902 * 359.76470 * 21 19 18 23 23 C 1.38988 * 118.48768 * 0.47577 * 22 21 19 24 24 F 1.35098 * 120.48657 * 179.80038 * 23 22 21 25 25 H 1.09002 * 109.47311 * 59.99672 * 1 2 3 26 26 H 1.09005 * 109.46751 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46901 * 299.99267 * 1 2 3 28 28 H 1.09010 * 109.47077 * 240.00255 * 2 1 3 29 29 H 1.09004 * 109.47057 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47976 * 300.00492 * 3 2 1 31 31 H 1.09003 * 109.47140 * 60.00559 * 3 2 1 32 32 H 1.09003 * 109.47354 * 304.99934 * 4 2 1 33 33 H 1.09000 * 109.47365 * 184.99833 * 4 2 1 34 34 H 1.09002 * 109.47170 * 29.99782 * 6 5 4 35 35 H 1.09003 * 109.47263 * 149.99304 * 6 5 4 36 36 H 0.97005 * 120.00200 * 179.97438 * 10 9 7 37 37 H 1.07991 * 120.30703 * 179.97438 * 21 19 18 38 38 H 1.08009 * 120.75235 * 180.27429 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6526 -2.1329 1.1904 6 6 0.4542 -2.5935 1.8961 7 6 0.8254 -3.0144 3.2946 8 1 1.8513 -2.9453 3.6250 9 6 -0.1448 -3.4867 4.1529 10 7 0.1791 -3.8535 5.3736 11 14 -1.9194 -3.6056 3.5818 12 1 -2.1562 -4.9409 2.9768 13 1 -2.8266 -3.4202 4.7428 14 1 -2.1861 -2.5502 2.5718 15 6 2.3984 -3.0078 0.4871 16 8 2.0397 -4.1642 0.3804 17 6 3.6545 -2.5605 -0.1553 18 7 3.9811 -1.2730 -0.1385 19 6 5.0876 -0.8343 -0.6979 20 17 5.4601 0.8603 -0.6440 21 6 5.9622 -1.7074 -1.3311 22 6 5.6647 -3.0585 -1.3680 23 6 4.4864 -3.4943 -0.7735 24 9 4.1542 -4.8038 -0.7895 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6054 -0.2619 2.1369 33 1 3.1263 -0.6445 1.2950 34 1 -0.2744 -1.7840 1.9415 35 1 0.0225 -3.4413 1.3640 36 1 -0.5036 -4.1855 5.9775 37 1 6.8677 -1.3360 -1.7874 38 1 6.3314 -3.7578 -1.8507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758774853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:55 Heat of formation + Delta-G solvation = -53.200245 kcal Electronic energy + Delta-G solvation = -24872.969677 eV Core-core repulsion = 21077.046913 eV Total energy + Delta-G solvation = -3795.922764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.14453 -41.93340 -40.20041 -37.94066 -37.70369 -35.42567 -34.34726 -33.90072 -32.11835 -30.27191 -27.96499 -27.15781 -26.21145 -24.84802 -23.96550 -21.64042 -20.78237 -19.17353 -19.05291 -18.66887 -18.36291 -17.31236 -17.15254 -16.95871 -16.35011 -15.96046 -15.81031 -15.19686 -15.10200 -14.95612 -14.70464 -14.45530 -14.36355 -14.02073 -13.78757 -13.53664 -13.16654 -13.02461 -12.84544 -12.66919 -12.57781 -12.27486 -12.13593 -11.96217 -11.78804 -11.71120 -11.55168 -11.29153 -11.10228 -10.85586 -10.35619 -10.09497 -9.39571 -8.37096 -6.42706 -0.77526 -0.28992 0.58673 1.29968 1.34069 1.42667 1.55058 1.99027 2.28191 2.41015 2.77100 2.91827 2.97822 3.44917 3.45635 3.80430 4.02898 4.13675 4.17155 4.30195 4.51526 4.60328 4.63968 4.70517 4.82999 4.85052 4.88136 5.01379 5.10272 5.12460 5.23482 5.30091 5.40495 5.44985 5.56632 5.65991 6.10961 6.21407 6.52214 6.57703 7.07748 7.24041 8.79917 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.005252 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.581073 B = 5330.422491 C = 6426.409380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.135 4.135 4 C 0.106 3.894 5 N -0.569 5.569 6 C 0.226 3.774 7 C -0.539 4.539 8 H 0.027 0.973 9 C 0.016 3.984 10 N -0.942 5.942 11 Si 0.944 3.056 12 H -0.274 1.274 13 H -0.271 1.271 14 H -0.239 1.239 15 C 0.544 3.456 16 O -0.573 6.573 17 C 0.048 3.952 18 N -0.424 5.424 19 C 0.144 3.856 20 Cl 0.002 6.998 21 C -0.079 4.079 22 C -0.082 4.082 23 C 0.092 3.908 24 F -0.120 7.120 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.020 0.980 36 H 0.270 0.730 37 H 0.209 0.791 38 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.207 12.167 -18.552 25.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 C -0.193 4.193 4 C -0.016 4.016 5 N -0.296 5.296 6 C 0.105 3.895 7 C -0.578 4.578 8 H 0.045 0.955 9 C -0.183 4.183 10 N -0.582 5.582 11 Si 0.766 3.234 12 H -0.199 1.199 13 H -0.196 1.196 14 H -0.163 1.163 15 C 0.331 3.669 16 O -0.454 6.454 17 C -0.090 4.090 18 N -0.138 5.138 19 C -0.024 4.024 20 Cl 0.030 6.970 21 C -0.099 4.099 22 C -0.108 4.108 23 C 0.069 3.931 24 F -0.099 7.099 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.226 0.774 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 12.346 12.194 -17.983 24.990 hybrid contribution -0.566 -1.276 0.368 1.444 sum 11.780 10.918 -17.614 23.838 Atomic orbital electron populations 1.21936 0.95998 1.00643 1.02177 1.21262 0.94993 0.97395 0.97023 1.21740 1.02035 0.93426 1.02098 1.22361 1.02980 0.78086 0.98136 1.47859 1.25712 1.09677 1.46393 1.19461 0.84288 0.95530 0.90264 1.21498 0.95176 1.43888 0.97195 0.95464 1.25798 1.04107 0.93778 0.94570 1.70039 1.35922 1.44637 1.07586 0.85768 0.78629 0.79941 0.79026 1.19944 1.19579 1.16257 1.18224 0.83761 0.85072 0.79855 1.90777 1.71965 1.19218 1.63395 1.20985 0.96663 0.89325 1.02027 1.67562 1.17681 1.13354 1.15205 1.22313 0.92600 0.89655 0.97861 1.98430 1.92102 1.09542 1.96885 1.22468 1.00682 0.90740 0.95992 1.22131 0.93629 0.97741 0.97270 1.19075 0.96101 0.78809 0.99095 1.91598 1.92379 1.31983 1.93890 0.91196 0.95075 0.92556 0.92294 0.91420 0.91548 0.92595 0.92089 0.86838 0.92812 0.96207 0.92122 0.77389 0.77540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 8.39 71.98 0.60 -3.80 16 2 C -0.09 -2.51 2.38 -10.80 -0.03 -2.54 16 3 C -0.14 -2.97 9.19 71.98 0.66 -2.30 16 4 C 0.11 3.83 4.41 86.38 0.38 4.21 16 5 N -0.57 -25.72 2.17 -829.41 -1.80 -27.51 16 6 C 0.23 11.70 3.35 85.63 0.29 11.99 16 7 C -0.54 -33.05 9.94 25.60 0.25 -32.79 16 8 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 9 C 0.02 0.97 5.47 84.66 0.46 1.43 16 10 N -0.94 -60.73 13.96 21.45 0.30 -60.43 16 11 Si 0.94 45.64 27.47 68.60 1.88 47.53 16 12 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 15 C 0.54 24.87 7.58 86.83 0.66 25.53 16 16 O -0.57 -30.84 14.89 -3.85 -0.06 -30.90 16 17 C 0.05 1.63 6.49 41.89 0.27 1.90 16 18 N -0.42 -11.72 4.48 -175.75 -0.79 -12.50 16 19 C 0.14 2.73 7.27 84.89 0.62 3.35 16 20 Cl 0.00 0.03 27.12 -2.72 -0.07 -0.05 16 21 C -0.08 -0.93 9.88 22.45 0.22 -0.71 16 22 C -0.08 -1.24 10.16 22.49 0.23 -1.01 16 23 C 0.09 2.63 7.31 22.76 0.17 2.80 16 24 F -0.12 -4.19 15.57 44.97 0.70 -3.49 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.03 1.06 6.45 -2.38 -0.02 1.05 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.78 7.00 -2.38 -0.02 1.76 16 29 H 0.07 1.40 6.01 -2.38 -0.01 1.38 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 2.31 8.02 -2.39 -0.02 2.30 16 33 H 0.11 3.91 5.16 -5.38 -0.03 3.88 16 34 H 0.05 2.58 5.86 -2.39 -0.01 2.57 16 35 H 0.02 1.09 6.80 -2.39 -0.02 1.08 16 36 H 0.27 16.09 8.31 -92.70 -0.77 15.32 16 37 H 0.21 0.43 8.06 -2.92 -0.02 0.41 16 38 H 0.21 1.31 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -80.90 328.58 5.98 -74.92 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.02 Total: 4.39 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 4.79 Total: 8.05 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -2.28 Total: -100.45 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.06 Total: -30.90 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.70 Total: -3.49 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.53 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.07 Total: -0.05 kcal Total: -80.90 5.98 -74.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758774853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.722 kcal (2) G-P(sol) polarization free energy of solvation -80.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds