Wall clock time and date at job start Tue Mar 31 2020 10:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99619 * 2 1 4 4 C 1.50699 * 109.47613 * 293.95742 * 3 2 1 5 5 O 1.21284 * 119.99702 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00344 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00557 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47459 * 180.02562 * 7 6 4 9 9 H 1.07995 * 120.00011 * 359.97438 * 8 7 6 10 10 C 1.37884 * 120.00087 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99731 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99935 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47000 * 60.00223 * 12 10 8 14 14 H 1.48507 * 109.46864 * 179.97438 * 12 10 8 15 15 H 1.48491 * 109.47417 * 299.99902 * 12 10 8 16 16 C 1.46893 * 111.00433 * 123.95842 * 2 1 3 17 17 C 1.50701 * 109.47098 * 66.04742 * 16 2 1 18 18 C 1.38265 * 119.97209 * 270.01984 * 17 16 2 19 19 C 1.38212 * 120.06111 * 180.02562 * 18 17 16 20 20 C 1.38324 * 120.01216 * 359.95565 * 19 18 17 21 21 Cl 1.73601 * 120.02683 * 180.29713 * 20 19 18 22 22 C 1.38555 * 119.94892 * 0.02568 * 20 19 18 23 23 F 1.35095 * 120.02786 * 180.02562 * 22 20 19 24 24 C 1.38189 * 119.97632 * 90.00441 * 17 16 2 25 25 H 1.09000 * 109.46715 * 296.04024 * 1 2 3 26 26 H 1.09000 * 109.47282 * 56.04239 * 1 2 3 27 27 H 1.09001 * 109.46492 * 176.04379 * 1 2 3 28 28 H 1.09001 * 109.47101 * 53.96084 * 3 2 1 29 29 H 1.09006 * 109.47013 * 173.95352 * 3 2 1 30 30 H 0.97006 * 119.99835 * 0.02562 * 6 4 3 31 31 H 1.09001 * 109.47085 * 300.00407 * 7 6 4 32 32 H 1.09001 * 109.46690 * 59.99837 * 7 6 4 33 33 H 0.97001 * 119.99697 * 180.02562 * 11 10 8 34 34 H 1.09004 * 109.47104 * 306.04220 * 16 2 1 35 35 H 1.09006 * 109.47139 * 186.04526 * 16 2 1 36 36 H 1.08000 * 119.97259 * 0.02562 * 18 17 16 37 37 H 1.08000 * 119.99873 * 180.02562 * 19 18 17 38 38 H 1.08003 * 120.00788 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0473 -1.2984 5 8 1.0053 1.4455 -2.1410 6 7 2.0178 3.3203 -1.5232 7 6 1.6697 3.9772 -2.7855 8 6 2.2096 5.3841 -2.7854 9 1 2.7569 5.7524 -1.9303 10 6 2.0039 6.2016 -3.8766 11 7 1.3370 5.7532 -4.9176 12 14 2.6725 7.9457 -3.8760 13 1 4.1498 7.9095 -3.7283 14 1 2.3197 8.6114 -5.1558 15 1 2.0802 8.7026 -2.7441 16 6 1.9955 -0.7660 1.1374 17 6 1.6371 -2.2205 0.9726 18 6 0.4507 -2.7029 1.4937 19 6 0.1204 -4.0366 1.3441 20 6 0.9764 -4.8901 0.6717 21 17 0.5583 -6.5637 0.4768 22 6 2.1652 -4.4071 0.1489 23 9 3.0021 -5.2392 -0.5085 24 6 2.4942 -3.0709 0.3004 25 1 -0.3633 0.4512 0.9234 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3632 -1.0253 -0.0709 28 1 1.5611 1.9274 0.8310 29 1 3.0797 1.3445 0.1083 30 1 2.5232 3.8015 -0.8493 31 1 2.1048 3.4215 -3.6163 32 1 0.5855 4.0036 -2.8944 33 1 1.1927 6.3282 -5.6854 34 1 1.5613 -0.3873 2.0627 35 1 3.0799 -0.6611 1.1754 36 1 -0.2185 -2.0369 2.0182 37 1 -0.8067 -4.4122 1.7512 38 1 3.4208 -2.6934 -0.1062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762927983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:02 Heat of formation + Delta-G solvation = -79.919468 kcal Electronic energy + Delta-G solvation = -22650.862161 eV Core-core repulsion = 18853.780764 eV Total energy + Delta-G solvation = -3797.081397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.02733 -40.87030 -40.21710 -38.00051 -37.26415 -36.01431 -34.31696 -32.69705 -31.71842 -30.14677 -28.37464 -27.94989 -25.03426 -24.05583 -23.59334 -22.06892 -21.26167 -18.98645 -18.47867 -17.76319 -17.60029 -17.34859 -17.18301 -16.86089 -16.68754 -16.30304 -15.70593 -15.62414 -15.24615 -14.93508 -14.62139 -14.30702 -14.10651 -14.01700 -13.95147 -13.71863 -13.22232 -12.92850 -12.83853 -12.71456 -12.60749 -12.47643 -12.35406 -12.21875 -12.15655 -11.95115 -11.49086 -10.77162 -10.62053 -10.00181 -9.77311 -9.70139 -9.20127 -8.27600 -6.44207 -0.13646 0.08228 0.95417 1.44084 1.48106 1.56241 1.86623 2.20120 2.37092 2.61894 3.02536 3.07197 3.23133 3.55206 3.72954 4.00576 4.06813 4.17296 4.26725 4.40510 4.42639 4.52056 4.60099 4.67399 4.79000 4.85222 4.96107 5.03350 5.14162 5.19385 5.27203 5.38697 5.52132 5.67098 5.73884 5.87482 5.95447 6.11797 6.67724 7.00829 7.25790 7.60118 8.84300 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.033392 B = 0.002108 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.333998 B =13282.142439 C =13444.529867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.543 5.543 3 C 0.051 3.949 4 C 0.492 3.508 5 O -0.587 6.587 6 N -0.711 5.711 7 C 0.269 3.731 8 C -0.555 4.555 9 H 0.085 0.915 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.985 3.015 13 H -0.262 1.262 14 H -0.288 1.288 15 H -0.261 1.261 16 C 0.093 3.907 17 C -0.045 4.045 18 C -0.103 4.103 19 C -0.081 4.081 20 C -0.087 4.087 21 Cl -0.059 7.059 22 C 0.085 3.915 23 F -0.141 7.141 24 C -0.127 4.127 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.409 0.591 31 H -0.017 1.017 32 H -0.015 1.015 33 H 0.268 0.732 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 -17.566 20.556 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.080 4.080 4 C 0.279 3.721 5 O -0.467 6.467 6 N -0.362 5.362 7 C 0.146 3.854 8 C -0.593 4.593 9 H 0.103 0.897 10 C -0.198 4.198 11 N -0.571 5.571 12 Si 0.808 3.192 13 H -0.186 1.186 14 H -0.213 1.213 15 H -0.185 1.185 16 C -0.033 4.033 17 C -0.046 4.046 18 C -0.122 4.122 19 C -0.100 4.100 20 C -0.115 4.115 21 Cl -0.030 7.030 22 C 0.065 3.935 23 F -0.119 7.119 24 C -0.146 4.146 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.149 0.851 30 H 0.244 0.756 31 H 0.001 0.999 32 H 0.003 0.997 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.181 0.819 37 H 0.183 0.817 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.509 -18.341 19.309 26.636 hybrid contribution 0.130 0.822 -0.182 0.852 sum 0.639 -17.519 19.127 25.945 Atomic orbital electron populations 1.22515 0.86773 1.02639 1.00818 1.61487 1.09090 1.12449 1.43752 1.21965 1.03656 0.89195 0.93144 1.21460 0.79022 0.81522 0.90117 1.90630 1.42022 1.65220 1.48875 1.46181 1.56366 1.13331 1.20297 1.18461 0.93569 0.91848 0.81516 1.21612 1.36735 0.97223 1.03727 0.89654 1.26090 0.95004 1.04132 0.94572 1.70140 1.41129 1.38895 1.06915 0.85210 0.79109 0.77308 0.77607 1.18634 1.21326 1.18533 1.21210 1.02228 0.87825 0.92055 1.19832 0.93824 0.95662 0.95258 1.21447 0.96283 0.94911 0.99534 1.21235 0.99362 0.92627 0.96761 1.21218 0.96516 0.87700 1.06028 1.98381 1.93057 1.15146 1.96437 1.17665 0.89024 0.88996 0.97850 1.91503 1.70323 1.71383 1.78729 1.21177 1.02710 0.90235 1.00492 0.93568 0.93238 0.90711 0.88898 0.85095 0.75577 0.99892 0.99716 0.92329 0.90370 0.87629 0.81903 0.81712 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.78 127.69 1.12 1.61 16 2 N -0.54 -12.40 4.49 -931.62 -4.18 -16.58 16 3 C 0.05 1.15 5.45 85.56 0.47 1.62 16 4 C 0.49 18.48 7.52 87.66 0.66 19.14 16 5 O -0.59 -28.31 14.33 -3.04 -0.04 -28.36 16 6 N -0.71 -28.61 5.55 -466.81 -2.59 -31.20 16 7 C 0.27 14.59 5.43 85.63 0.46 15.06 16 8 C -0.56 -29.73 9.28 25.60 0.24 -29.49 16 9 H 0.09 4.07 7.60 -2.91 -0.02 4.05 16 10 C 0.00 0.08 5.46 84.66 0.46 0.54 16 11 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 12 Si 0.98 41.79 29.54 68.60 2.03 43.82 16 13 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 14 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 16 C 0.09 1.30 5.12 85.56 0.44 1.74 16 17 C -0.04 -0.71 4.88 -19.87 -0.10 -0.81 16 18 C -0.10 -1.32 7.96 22.27 0.18 -1.15 16 19 C -0.08 -1.14 9.83 22.28 0.22 -0.92 16 20 C -0.09 -1.65 6.33 22.37 0.14 -1.51 16 21 Cl -0.06 -1.12 28.62 -2.72 -0.08 -1.20 16 22 C 0.08 1.81 7.28 22.39 0.16 1.97 16 23 F -0.14 -3.43 16.84 44.97 0.76 -2.67 16 24 C -0.13 -2.40 9.68 22.31 0.22 -2.18 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 1.65 5.83 -2.39 -0.01 1.64 16 27 H 0.07 1.62 6.16 -2.39 -0.01 1.61 16 28 H 0.09 1.57 8.12 -2.39 -0.02 1.55 16 29 H 0.13 2.21 7.93 -2.38 -0.02 2.19 16 30 H 0.41 13.11 8.32 -92.70 -0.77 12.34 16 31 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 32 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.08 0.71 8.07 -2.39 -0.02 0.69 16 35 H 0.11 1.16 7.87 -2.38 -0.02 1.14 16 36 H 0.16 1.24 8.03 -2.91 -0.02 1.22 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -75.01 343.73 1.16 -73.84 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.32 Total: 12.66 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 4.67 Total: 5.63 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -6.49 Total: -103.73 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.04 Total: -28.36 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.76 Total: -2.67 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -75.01 1.16 -73.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762927983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.077 kcal (2) G-P(sol) polarization free energy of solvation -75.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds