Wall clock time and date at job start Tue Mar 31 2020 10:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99700 * 2 1 4 4 C 1.50698 * 109.47365 * 293.95402 * 3 2 1 5 5 O 1.21278 * 120.00220 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99653 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99812 * 180.02562 * 6 4 3 8 8 C 1.50695 * 109.47169 * 180.02562 * 7 6 4 9 9 H 1.07996 * 120.00054 * 359.97438 * 8 7 6 10 10 C 1.37883 * 120.00013 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00022 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 119.99898 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47290 * 90.00201 * 12 10 8 14 14 H 1.48505 * 109.47127 * 210.00568 * 12 10 8 15 15 H 1.48504 * 109.47214 * 330.00054 * 12 10 8 16 16 C 1.46894 * 110.99986 * 123.95774 * 2 1 3 17 17 C 1.50698 * 109.47175 * 66.04542 * 16 2 1 18 18 C 1.38264 * 119.97083 * 270.01653 * 17 16 2 19 19 C 1.38194 * 120.05301 * 180.02562 * 18 17 16 20 20 C 1.38447 * 119.98582 * 359.95563 * 19 18 17 21 21 F 1.35098 * 120.03314 * 180.29640 * 20 19 18 22 22 C 1.38555 * 119.93778 * 0.02622 * 20 19 18 23 23 Cl 1.73602 * 120.02332 * 180.02562 * 22 20 19 24 24 C 1.38218 * 119.96823 * 90.00112 * 17 16 2 25 25 H 1.09002 * 109.46609 * 296.04199 * 1 2 3 26 26 H 1.09001 * 109.47364 * 56.03976 * 1 2 3 27 27 H 1.09001 * 109.46905 * 176.04565 * 1 2 3 28 28 H 1.08993 * 109.47174 * 53.96274 * 3 2 1 29 29 H 1.09003 * 109.46634 * 173.95360 * 3 2 1 30 30 H 0.97001 * 120.00779 * 359.97438 * 6 4 3 31 31 H 1.09006 * 109.46983 * 299.99717 * 7 6 4 32 32 H 1.08998 * 109.47221 * 59.99810 * 7 6 4 33 33 H 0.97000 * 119.99944 * 179.97438 * 11 10 8 34 34 H 1.08999 * 109.47515 * 306.03925 * 16 2 1 35 35 H 1.09004 * 109.46810 * 186.04403 * 16 2 1 36 36 H 1.07999 * 119.97540 * 0.02562 * 18 17 16 37 37 H 1.08000 * 120.00964 * 180.02562 * 19 18 17 38 38 H 1.07992 * 119.99809 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0047 1.4457 -2.1407 6 7 2.0188 3.3199 -1.5235 7 6 1.6698 3.9770 -2.7856 8 6 2.2110 5.3835 -2.7861 9 1 2.7596 5.7512 -1.9316 10 6 2.0048 6.2011 -3.8770 11 7 2.4775 7.4284 -3.8776 12 14 1.0552 5.5653 -5.3545 13 1 -0.3901 5.8557 -5.1765 14 1 1.5470 6.2357 -6.5849 15 1 1.2540 4.0987 -5.4769 16 6 1.9954 -0.7660 1.1375 17 6 1.6369 -2.2204 0.9727 18 6 0.4505 -2.7027 1.4938 19 6 0.1203 -4.0362 1.3442 20 6 0.9775 -4.8900 0.6710 21 9 0.6528 -6.1925 0.5189 22 6 2.1661 -4.4061 0.1487 23 17 3.2423 -5.4746 -0.6964 24 6 2.4942 -3.0710 0.3004 25 1 -0.3632 0.4512 0.9234 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 1.5612 1.9273 0.8309 29 1 3.0797 1.3444 0.1083 30 1 2.5241 3.8011 -0.8498 31 1 2.1035 3.4210 -3.6168 32 1 0.5855 4.0045 -2.8932 33 1 2.3328 8.0035 -4.6452 34 1 1.5612 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1755 36 1 -0.2186 -2.0368 2.0183 37 1 -0.8067 -4.4121 1.7512 38 1 3.4207 -2.6932 -0.1061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763822672.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:52 Heat of formation + Delta-G solvation = -76.163583 kcal Electronic energy + Delta-G solvation = -22718.238445 eV Core-core repulsion = 18921.319915 eV Total energy + Delta-G solvation = -3796.918529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.02658 -40.89290 -40.24293 -37.94324 -37.30783 -36.02464 -34.37761 -32.55419 -31.98132 -30.53122 -28.52436 -27.82975 -24.72277 -24.11916 -23.42551 -22.03024 -21.34807 -19.14574 -18.82083 -17.84384 -17.74201 -17.26565 -16.89263 -16.84248 -16.70381 -16.07455 -15.78315 -15.66476 -15.27154 -14.90933 -14.80332 -14.51609 -14.35876 -14.22992 -13.97619 -13.76030 -13.15231 -13.05394 -12.81898 -12.73887 -12.58151 -12.47795 -12.31277 -12.22016 -11.94576 -11.92993 -11.63585 -10.90681 -10.66566 -10.00882 -9.85960 -9.69860 -9.19484 -8.39193 -6.45506 -0.11961 0.06812 0.95945 1.32637 1.35620 1.47896 1.82775 2.20220 2.28682 2.54181 2.96513 3.04711 3.22813 3.58452 3.70147 3.97420 4.06638 4.13960 4.25627 4.39195 4.42889 4.55640 4.61079 4.73338 4.77563 4.82869 4.89500 4.90597 5.05841 5.06418 5.19106 5.29291 5.37932 5.59711 5.66934 5.92824 6.11198 6.13738 6.56374 6.93688 7.18241 7.51939 8.75448 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.002367 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.363790 B =11825.701294 C =12181.070444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.048 3.952 4 C 0.497 3.503 5 O -0.582 6.582 6 N -0.709 5.709 7 C 0.234 3.766 8 C -0.544 4.544 9 H 0.061 0.939 10 C 0.026 3.974 11 N -0.931 5.931 12 Si 0.936 3.064 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.262 1.262 16 C 0.095 3.905 17 C -0.075 4.075 18 C -0.073 4.073 19 C -0.139 4.139 20 C 0.087 3.913 21 F -0.139 7.139 22 C -0.089 4.089 23 Cl -0.062 7.062 24 C -0.067 4.067 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.409 0.591 31 H 0.008 0.992 32 H 0.009 0.991 33 H 0.272 0.728 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 -23.105 16.569 28.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.266 5.266 3 C -0.082 4.082 4 C 0.284 3.716 5 O -0.462 6.462 6 N -0.359 5.359 7 C 0.110 3.890 8 C -0.582 4.582 9 H 0.079 0.921 10 C -0.174 4.174 11 N -0.570 5.570 12 Si 0.760 3.240 13 H -0.190 1.190 14 H -0.200 1.200 15 H -0.186 1.186 16 C -0.031 4.031 17 C -0.076 4.076 18 C -0.091 4.091 19 C -0.157 4.157 20 C 0.067 3.933 21 F -0.118 7.118 22 C -0.117 4.117 23 Cl -0.033 7.033 24 C -0.087 4.087 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.148 0.852 30 H 0.245 0.755 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.181 0.819 37 H 0.184 0.816 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.276 -23.715 15.350 28.341 hybrid contribution -0.258 0.333 -0.335 0.538 sum -2.535 -23.382 15.015 27.904 Atomic orbital electron populations 1.22525 0.86756 1.02636 1.00889 1.61515 1.09079 1.12246 1.43755 1.21964 1.03688 0.89307 0.93248 1.21364 0.78912 0.81234 0.90097 1.90621 1.41845 1.65077 1.48633 1.46023 1.56511 1.13374 1.20037 1.19022 0.94715 0.91523 0.83727 1.21314 1.36407 0.96378 1.04101 0.92067 1.25589 0.96004 0.94731 1.01112 1.69979 1.46678 1.08141 1.32238 0.85879 0.79572 0.79325 0.79225 1.19013 1.19982 1.18644 1.21167 1.02136 0.87849 0.91957 1.19894 0.94487 0.95817 0.97391 1.21376 0.95759 0.94540 0.97447 1.21385 1.00583 0.93564 1.00213 1.17732 0.94529 0.79245 1.01834 1.91507 1.92526 1.33731 1.94000 1.21161 0.93408 0.93457 1.03632 1.98384 1.63695 1.64948 1.76273 1.21015 1.01263 0.89547 0.96832 0.93767 0.92852 0.90788 0.89053 0.85202 0.75543 0.97366 0.97321 0.91907 0.90643 0.87744 0.81886 0.81582 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 8.78 127.69 1.12 1.55 16 2 N -0.54 -11.29 4.49 -931.66 -4.18 -15.48 16 3 C 0.05 1.01 5.45 85.56 0.47 1.48 16 4 C 0.50 17.00 7.52 87.66 0.66 17.66 16 5 O -0.58 -25.12 14.33 -3.02 -0.04 -25.16 16 6 N -0.71 -26.58 5.55 -466.79 -2.59 -29.17 16 7 C 0.23 11.24 4.50 85.63 0.38 11.63 16 8 C -0.54 -29.48 9.83 25.60 0.25 -29.23 16 9 H 0.06 3.46 7.84 -2.91 -0.02 3.43 16 10 C 0.03 1.45 5.47 84.66 0.46 1.91 16 11 N -0.93 -55.14 13.96 21.45 0.30 -54.84 16 12 Si 0.94 43.94 27.47 68.60 1.88 45.82 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.26 -12.29 6.54 99.48 0.65 -11.64 16 16 C 0.10 1.21 5.12 85.56 0.44 1.65 16 17 C -0.07 -1.08 4.88 -19.86 -0.10 -1.18 16 18 C -0.07 -0.86 7.96 22.27 0.18 -0.68 16 19 C -0.14 -1.86 10.03 22.31 0.22 -1.63 16 20 C 0.09 1.62 7.28 22.40 0.16 1.78 16 21 F -0.14 -2.92 16.84 44.97 0.76 -2.16 16 22 C -0.09 -1.74 6.33 22.37 0.14 -1.60 16 23 Cl -0.06 -1.27 28.62 -2.72 -0.08 -1.34 16 24 C -0.07 -1.16 9.48 22.29 0.21 -0.95 16 25 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 1.61 5.82 -2.39 -0.01 1.59 16 27 H 0.07 1.45 6.16 -2.39 -0.01 1.44 16 28 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 29 H 0.13 2.04 7.93 -2.39 -0.02 2.02 16 30 H 0.41 13.02 8.32 -92.71 -0.77 12.25 16 31 H 0.01 0.43 7.20 -2.38 -0.02 0.41 16 32 H 0.01 0.44 7.57 -2.39 -0.02 0.43 16 33 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.08 0.63 8.06 -2.39 -0.02 0.61 16 35 H 0.10 1.04 7.87 -2.38 -0.02 1.03 16 36 H 0.16 1.07 8.03 -2.91 -0.02 1.05 16 37 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -71.17 340.13 0.92 -70.25 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.27 Total: 9.69 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 4.60 Total: 2.39 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -6.47 Total: -99.49 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.04 Total: -25.16 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.76 Total: -2.16 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.34 kcal Total: -71.17 0.92 -70.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763822672.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.911 kcal (2) G-P(sol) polarization free energy of solvation -71.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds