Wall clock time and date at job start Tue Mar 31 2020 10:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47117 * 2 1 4 4 C 1.52998 * 109.46865 * 119.99774 * 2 1 3 5 5 N 1.46506 * 109.47213 * 62.99801 * 4 2 1 6 6 C 1.46497 * 120.00301 * 84.41188 * 5 4 2 7 7 C 1.50698 * 109.46947 * 79.97235 * 6 5 4 8 8 H 1.08002 * 120.00415 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99809 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99917 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00221 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47084 * 89.99765 * 11 9 7 13 13 H 1.48496 * 109.47237 * 210.00123 * 11 9 7 14 14 H 1.48498 * 109.46708 * 329.99949 * 11 9 7 15 15 C 1.34775 * 119.99828 * 264.41227 * 5 4 2 16 16 O 1.21528 * 120.00213 * 353.14659 * 15 5 4 17 17 C 1.48002 * 120.00114 * 173.14705 * 15 5 4 18 18 C 1.39946 * 120.93099 * 31.04890 * 17 15 5 19 19 C 1.37989 * 119.06564 * 179.73294 * 18 17 15 20 20 N 1.31902 * 120.99632 * 0.55039 * 19 18 17 21 21 C 1.31801 * 122.07375 * 359.71915 * 20 19 18 22 22 Cl 1.73596 * 119.58829 * 179.97438 * 21 20 19 23 23 C 1.38712 * 120.81429 * 0.02562 * 21 20 19 24 24 F 1.35101 * 120.53937 * 179.97438 * 23 21 20 25 25 H 1.08998 * 109.47119 * 183.99151 * 1 2 3 26 26 H 1.09001 * 109.47094 * 303.99116 * 1 2 3 27 27 H 1.09003 * 109.46643 * 63.99183 * 1 2 3 28 28 H 1.08997 * 109.46854 * 239.99254 * 2 1 3 29 29 H 1.09002 * 109.47394 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47291 * 299.99447 * 3 2 1 31 31 H 1.08997 * 109.47868 * 59.99875 * 3 2 1 32 32 H 1.08997 * 109.47692 * 302.99788 * 4 2 1 33 33 H 1.09005 * 109.47221 * 182.99795 * 4 2 1 34 34 H 1.08996 * 109.47544 * 199.97670 * 6 5 4 35 35 H 1.09004 * 109.46673 * 319.98207 * 6 5 4 36 36 H 0.97002 * 119.99922 * 179.97438 * 10 9 7 37 37 H 1.08000 * 120.47077 * 359.97237 * 18 17 15 38 38 H 1.07997 * 119.50208 * 180.29207 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6115 -2.1217 1.2138 6 6 2.4015 -3.1110 0.4766 7 6 3.5836 -3.5325 1.3108 8 1 3.7314 -3.1064 2.2922 9 6 4.4765 -4.4621 0.8213 10 7 5.5079 -4.8303 1.5495 11 14 4.2212 -5.1986 -0.8763 12 1 4.9178 -4.3639 -1.8879 13 1 4.7737 -6.5766 -0.9063 14 1 2.7691 -5.2407 -1.1843 15 6 0.4905 -2.5000 1.8593 16 8 -0.0964 -1.7097 2.5719 17 6 -0.0258 -3.8779 1.7003 18 6 0.8442 -4.9505 1.4741 19 6 0.3216 -6.2202 1.3371 20 7 -0.9787 -6.4306 1.4056 21 6 -1.8363 -5.4512 1.6116 22 17 -3.5347 -5.8013 1.6896 23 6 -1.3984 -4.1440 1.7658 24 9 -2.2824 -3.1443 1.9761 25 1 -0.3633 -1.0252 0.0715 26 1 -0.3633 0.5745 0.8521 27 1 -0.3633 0.4507 -0.9236 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6335 -0.2394 2.1384 33 1 3.1287 -0.6749 1.2766 34 1 1.7822 -3.9810 0.2583 35 1 2.7536 -2.6721 -0.4569 36 1 6.1358 -5.4846 1.2052 37 1 1.9100 -4.7873 1.4115 38 1 0.9870 -7.0537 1.1671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766837334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:03 Heat of formation + Delta-G solvation = -32.875058 kcal Electronic energy + Delta-G solvation = -24844.729552 eV Core-core repulsion = 21049.688154 eV Total energy + Delta-G solvation = -3795.041398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.89134 -40.57708 -39.07902 -36.71095 -36.23635 -34.77658 -32.69212 -32.26564 -30.71784 -28.49289 -26.97672 -26.54493 -24.27781 -23.42002 -22.72762 -20.46259 -19.24352 -17.67922 -17.54097 -17.26097 -17.08065 -16.09999 -15.75024 -15.42961 -14.93924 -14.67368 -14.35176 -14.31884 -13.81080 -13.78818 -13.43987 -13.11570 -12.82829 -12.50032 -12.30468 -12.03947 -11.82132 -11.66200 -11.53743 -11.36345 -11.25647 -11.05209 -10.83375 -10.71817 -10.41326 -10.35006 -10.07906 -9.91870 -9.69061 -9.23894 -9.03096 -8.72562 -7.99919 -6.49654 -4.55171 0.66152 0.79460 1.65643 2.98390 3.01879 3.06292 3.10702 3.37456 3.65328 3.92060 4.00720 4.41663 4.59663 4.71471 4.80973 5.09889 5.13291 5.20890 5.33158 5.52219 5.71959 5.77443 5.86150 5.87501 6.04023 6.07752 6.10833 6.15718 6.20962 6.29816 6.42565 6.47765 6.49820 6.59823 7.00538 7.14301 7.55873 7.77545 8.11939 8.49481 8.60941 9.05596 10.61144 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.006631 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.739199 B = 4221.409514 C = 6265.501942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C -0.141 4.141 4 C 0.122 3.878 5 N -0.573 5.573 6 C 0.178 3.822 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.873 5.873 11 Si 0.860 3.140 12 H -0.269 1.269 13 H -0.277 1.277 14 H -0.260 1.260 15 C 0.561 3.439 16 O -0.539 6.539 17 C -0.111 4.111 18 C -0.115 4.115 19 C 0.092 3.908 20 N -0.440 5.440 21 C 0.122 3.878 22 Cl -0.021 7.021 23 C 0.115 3.885 24 F -0.103 7.103 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.272 0.728 37 H 0.215 0.785 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.810 2.016 -4.056 9.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 C -0.199 4.199 4 C 0.000 4.000 5 N -0.302 5.302 6 C 0.057 3.943 7 C -0.589 4.589 8 H 0.104 0.896 9 C -0.124 4.124 10 N -0.508 5.508 11 Si 0.685 3.315 12 H -0.194 1.194 13 H -0.202 1.202 14 H -0.184 1.184 15 C 0.348 3.652 16 O -0.418 6.418 17 C -0.123 4.123 18 C -0.134 4.134 19 C -0.065 4.065 20 N -0.151 5.151 21 C -0.044 4.044 22 Cl 0.008 6.992 23 C 0.091 3.909 24 F -0.081 7.081 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.230 0.770 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.412 1.496 -3.759 10.245 hybrid contribution 0.133 0.308 -0.820 0.887 sum -9.279 1.804 -4.580 10.504 Atomic orbital electron populations 1.21769 0.95121 1.01734 1.01011 1.21507 0.96284 0.96260 0.99256 1.21734 1.01079 0.95496 1.01597 1.21511 1.00420 0.80192 0.97919 1.47682 1.22913 1.09688 1.49924 1.20671 0.92017 0.88558 0.93018 1.21326 1.07228 1.25544 1.04842 0.89646 1.24922 0.94459 0.95854 0.97134 1.69873 1.12743 1.30988 1.37218 0.87089 0.79771 0.79718 0.84902 1.19378 1.20166 1.18384 1.17657 0.81350 0.85470 0.80731 1.90761 1.59213 1.53146 1.38644 1.20599 0.91266 0.97115 1.03292 1.24288 1.06463 0.91257 0.91379 1.22843 0.89232 0.97285 0.97161 1.66880 1.04132 1.33732 1.10357 1.21479 0.89182 0.88136 1.05596 1.98400 1.08671 1.95633 1.96525 1.18208 0.86836 0.84603 1.01270 1.91594 1.66594 1.58653 1.91302 0.93230 0.92416 0.93467 0.91044 0.92422 0.92811 0.92621 0.90001 0.89540 0.92849 0.94929 0.91770 0.76962 0.80453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.51 37.16 0.32 -1.74 16 2 C -0.11 -1.64 3.14 -90.62 -0.28 -1.92 16 3 C -0.14 -1.67 9.19 37.15 0.34 -1.32 16 4 C 0.12 2.07 4.99 -4.04 -0.02 2.05 16 5 N -0.57 -10.93 2.22 -176.12 -0.39 -11.32 16 6 C 0.18 3.52 3.75 -5.20 -0.02 3.51 16 7 C -0.55 -12.80 8.15 -34.44 -0.28 -13.09 16 8 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.08 1.97 5.38 -17.82 -0.10 1.88 16 10 N -0.87 -22.76 13.96 55.43 0.77 -21.98 16 11 Si 0.86 17.34 27.38 -169.99 -4.65 12.69 16 12 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 13 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.26 -4.82 6.54 56.52 0.37 -4.45 16 15 C 0.56 11.19 5.77 -12.26 -0.07 11.12 16 16 O -0.54 -11.66 15.02 5.34 0.08 -11.58 16 17 C -0.11 -2.06 5.59 -104.61 -0.58 -2.64 16 18 C -0.11 -2.01 7.58 -39.03 -0.30 -2.30 16 19 C 0.09 1.41 11.16 -17.61 -0.20 1.22 16 20 N -0.44 -7.11 10.31 -10.36 -0.11 -7.22 16 21 C 0.12 2.00 7.28 -17.39 -0.13 1.87 16 22 Cl -0.02 -0.29 28.78 -51.86 -1.49 -1.79 16 23 C 0.11 2.03 7.26 -38.76 -0.28 1.75 16 24 F -0.10 -1.87 15.75 2.25 0.04 -1.84 16 25 H 0.05 0.83 6.30 -51.93 -0.33 0.50 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.43 7.19 -51.93 -0.37 1.05 16 33 H 0.09 1.47 8.10 -51.93 -0.42 1.05 16 34 H 0.05 1.04 2.99 -51.95 -0.16 0.88 16 35 H 0.03 0.63 7.43 -51.93 -0.39 0.25 16 36 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.21 4.08 3.37 -52.49 -0.18 3.90 16 38 H 0.18 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -26.26 330.42 -6.75 -33.01 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.38 Total: 4.67 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.60 Total: 0.38 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.28 Total: -40.52 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -4.65 Total: 12.69 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.49 Total: -1.79 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.26 -6.75 -33.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766837334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.138 kcal (2) G-P(sol) polarization free energy of solvation -26.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds