Wall clock time and date at job start Tue Mar 31 2020 10:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47117 * 2 1 4 4 C 1.52998 * 109.46865 * 119.99774 * 2 1 3 5 5 N 1.46506 * 109.47213 * 62.99801 * 4 2 1 6 6 C 1.46497 * 120.00301 * 84.41188 * 5 4 2 7 7 C 1.50698 * 109.46947 * 79.97235 * 6 5 4 8 8 H 1.08002 * 120.00415 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99809 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99917 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00221 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47084 * 89.99765 * 11 9 7 13 13 H 1.48496 * 109.47237 * 210.00123 * 11 9 7 14 14 H 1.48498 * 109.46708 * 329.99949 * 11 9 7 15 15 C 1.34775 * 119.99828 * 264.41227 * 5 4 2 16 16 O 1.21528 * 120.00213 * 353.14659 * 15 5 4 17 17 C 1.48002 * 120.00114 * 173.14705 * 15 5 4 18 18 C 1.39946 * 120.93099 * 31.04890 * 17 15 5 19 19 C 1.37989 * 119.06564 * 179.73294 * 18 17 15 20 20 N 1.31902 * 120.99632 * 0.55039 * 19 18 17 21 21 C 1.31801 * 122.07375 * 359.71915 * 20 19 18 22 22 Cl 1.73596 * 119.58829 * 179.97438 * 21 20 19 23 23 C 1.38712 * 120.81429 * 0.02562 * 21 20 19 24 24 F 1.35101 * 120.53937 * 179.97438 * 23 21 20 25 25 H 1.08998 * 109.47119 * 183.99151 * 1 2 3 26 26 H 1.09001 * 109.47094 * 303.99116 * 1 2 3 27 27 H 1.09003 * 109.46643 * 63.99183 * 1 2 3 28 28 H 1.08997 * 109.46854 * 239.99254 * 2 1 3 29 29 H 1.09002 * 109.47394 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47291 * 299.99447 * 3 2 1 31 31 H 1.08997 * 109.47868 * 59.99875 * 3 2 1 32 32 H 1.08997 * 109.47692 * 302.99788 * 4 2 1 33 33 H 1.09005 * 109.47221 * 182.99795 * 4 2 1 34 34 H 1.08996 * 109.47544 * 199.97670 * 6 5 4 35 35 H 1.09004 * 109.46673 * 319.98207 * 6 5 4 36 36 H 0.97002 * 119.99922 * 179.97438 * 10 9 7 37 37 H 1.08000 * 120.47077 * 359.97237 * 18 17 15 38 38 H 1.07997 * 119.50208 * 180.29207 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6115 -2.1217 1.2138 6 6 2.4015 -3.1110 0.4766 7 6 3.5836 -3.5325 1.3108 8 1 3.7314 -3.1064 2.2922 9 6 4.4765 -4.4621 0.8213 10 7 5.5079 -4.8303 1.5495 11 14 4.2212 -5.1986 -0.8763 12 1 4.9178 -4.3639 -1.8879 13 1 4.7737 -6.5766 -0.9063 14 1 2.7691 -5.2407 -1.1843 15 6 0.4905 -2.5000 1.8593 16 8 -0.0964 -1.7097 2.5719 17 6 -0.0258 -3.8779 1.7003 18 6 0.8442 -4.9505 1.4741 19 6 0.3216 -6.2202 1.3371 20 7 -0.9787 -6.4306 1.4056 21 6 -1.8363 -5.4512 1.6116 22 17 -3.5347 -5.8013 1.6896 23 6 -1.3984 -4.1440 1.7658 24 9 -2.2824 -3.1443 1.9761 25 1 -0.3633 -1.0252 0.0715 26 1 -0.3633 0.5745 0.8521 27 1 -0.3633 0.4507 -0.9236 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6335 -0.2394 2.1384 33 1 3.1287 -0.6749 1.2766 34 1 1.7822 -3.9810 0.2583 35 1 2.7536 -2.6721 -0.4569 36 1 6.1358 -5.4846 1.2052 37 1 1.9100 -4.7873 1.4115 38 1 0.9870 -7.0537 1.1671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766837334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:02 Heat of formation + Delta-G solvation = -46.762211 kcal Electronic energy + Delta-G solvation = -24845.331745 eV Core-core repulsion = 21049.688154 eV Total energy + Delta-G solvation = -3795.643590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.27803 -41.99865 -40.50152 -37.93738 -37.69826 -36.19913 -34.44230 -33.62675 -32.05707 -30.16883 -28.17948 -27.81577 -25.71304 -24.75180 -24.39525 -21.76314 -20.61389 -19.13815 -19.05525 -18.83706 -18.55801 -17.52128 -17.14470 -16.87221 -16.44979 -16.03603 -15.93340 -15.58585 -15.21646 -15.09661 -14.82683 -14.53179 -14.38208 -13.87046 -13.68196 -13.22844 -13.09839 -12.96200 -12.87124 -12.75908 -12.59740 -12.43453 -12.25821 -11.91315 -11.82687 -11.72397 -11.61537 -11.50989 -11.13750 -10.85259 -10.65312 -10.06728 -9.55707 -8.33497 -6.44504 -0.73015 -0.53724 0.39570 1.41427 1.45950 1.53027 1.54219 1.92298 2.26207 2.31796 2.56385 2.97808 3.05770 3.24537 3.39829 3.79939 3.89821 4.00279 4.13617 4.20108 4.41829 4.51036 4.62449 4.62992 4.73418 4.75489 4.81872 4.90885 4.97479 5.02916 5.15670 5.17927 5.30120 5.37418 5.40977 5.57379 6.06998 6.25751 6.42367 6.64740 6.96251 7.21459 8.81131 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.006631 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.739199 B = 4221.409514 C = 6265.501942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.118 3.882 5 N -0.575 5.575 6 C 0.185 3.815 7 C -0.546 4.546 8 H 0.038 0.962 9 C 0.037 3.963 10 N -0.925 5.925 11 Si 0.920 3.080 12 H -0.269 1.269 13 H -0.275 1.275 14 H -0.229 1.229 15 C 0.556 3.444 16 O -0.564 6.564 17 C -0.123 4.123 18 C -0.123 4.123 19 C 0.109 3.891 20 N -0.439 5.439 21 C 0.127 3.873 22 Cl 0.001 6.999 23 C 0.104 3.896 24 F -0.110 7.110 25 H 0.026 0.974 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.273 0.727 37 H 0.200 0.800 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.970 1.243 -6.191 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.194 4.194 4 C -0.004 4.004 5 N -0.303 5.303 6 C 0.064 3.936 7 C -0.584 4.584 8 H 0.056 0.944 9 C -0.165 4.165 10 N -0.562 5.562 11 Si 0.742 3.258 12 H -0.194 1.194 13 H -0.200 1.200 14 H -0.151 1.151 15 C 0.344 3.656 16 O -0.445 6.445 17 C -0.135 4.135 18 C -0.143 4.143 19 C -0.048 4.048 20 N -0.150 5.150 21 C -0.039 4.039 22 Cl 0.030 6.970 23 C 0.080 3.920 24 F -0.088 7.088 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.216 0.784 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -10.594 0.741 -5.898 12.148 hybrid contribution 0.454 0.567 -0.043 0.727 sum -10.140 1.308 -5.941 11.825 Atomic orbital electron populations 1.21715 0.95232 1.00292 1.01828 1.21471 0.96054 0.97600 0.97545 1.21702 1.01373 0.93648 1.02643 1.21649 1.00017 0.79575 0.99169 1.47767 1.22616 1.10378 1.49513 1.20570 0.90993 0.89393 0.92669 1.21293 1.08597 1.25224 1.03308 0.94380 1.25666 0.93749 0.96047 1.01003 1.70017 1.14263 1.32339 1.39621 0.86124 0.81483 0.78642 0.79582 1.19372 1.20042 1.15116 1.17941 0.81354 0.86041 0.80312 1.90733 1.59994 1.54061 1.39698 1.20585 0.92058 0.96596 1.04222 1.24094 1.05422 0.92019 0.92724 1.23349 0.89408 0.97248 0.94785 1.67064 1.04286 1.33232 1.10457 1.21638 0.90307 0.87654 1.04257 1.98409 1.06846 1.95447 1.96301 1.18263 0.86462 0.85097 1.02204 1.91574 1.66661 1.59054 1.91492 0.95525 0.93278 0.91129 0.90802 0.91955 0.90862 0.92482 0.91057 0.90212 0.91259 0.93680 0.91718 0.78420 0.76987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.51 71.98 0.61 -3.19 16 2 C -0.11 -2.98 3.14 -10.80 -0.03 -3.01 16 3 C -0.14 -2.97 9.19 71.98 0.66 -2.31 16 4 C 0.12 4.06 4.99 86.38 0.43 4.49 16 5 N -0.57 -22.11 2.22 -829.40 -1.84 -23.95 16 6 C 0.18 7.19 3.75 85.63 0.32 7.51 16 7 C -0.55 -25.82 8.15 25.60 0.21 -25.61 16 8 H 0.04 2.12 8.06 -2.91 -0.02 2.10 16 9 C 0.04 1.78 5.38 84.65 0.46 2.24 16 10 N -0.93 -49.30 13.96 21.45 0.30 -49.00 16 11 Si 0.92 34.34 27.38 68.60 1.88 36.21 16 12 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 13 H -0.28 -10.22 7.11 99.48 0.71 -9.52 16 14 H -0.23 -7.33 6.54 99.48 0.65 -6.68 16 15 C 0.56 22.46 5.77 86.83 0.50 22.97 16 16 O -0.56 -25.03 15.02 -3.80 -0.06 -25.08 16 17 C -0.12 -4.50 5.59 -19.86 -0.11 -4.61 16 18 C -0.12 -4.13 7.58 22.62 0.17 -3.96 16 19 C 0.11 3.05 11.16 84.62 0.94 3.99 16 20 N -0.44 -12.98 10.31 -186.67 -1.92 -14.90 16 21 C 0.13 3.92 7.28 84.81 0.62 4.53 16 22 Cl 0.00 0.04 28.78 -2.72 -0.08 -0.04 16 23 C 0.10 3.57 7.26 22.80 0.17 3.74 16 24 F -0.11 -3.93 15.75 44.97 0.71 -3.23 16 25 H 0.03 0.86 6.30 -2.39 -0.02 0.85 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 2.03 8.00 -2.39 -0.02 2.01 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 2.58 7.19 -2.39 -0.02 2.56 16 33 H 0.08 2.80 8.10 -2.38 -0.02 2.78 16 34 H 0.07 2.55 2.99 -2.41 -0.01 2.55 16 35 H 0.05 1.66 7.43 -2.39 -0.02 1.65 16 36 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 37 H 0.20 7.42 3.37 -2.91 -0.01 7.41 16 38 H 0.21 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -57.76 330.42 4.98 -52.79 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 1.04 Total: 20.44 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 4.95 Total: 6.76 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -3.47 Total: -87.85 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.06 Total: -25.08 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.71 Total: -3.23 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 1.88 Total: 36.21 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.08 Total: -0.04 kcal Total: -57.76 4.98 -52.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766837334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.024 kcal (2) G-P(sol) polarization free energy of solvation -57.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds