Wall clock time and date at job start Tue Mar 31 2020 10:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.50701 * 109.46921 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46835 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00280 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99788 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00241 * 14 12 10 16 16 H 1.48495 * 109.46968 * 209.99597 * 14 12 10 17 17 H 1.48499 * 109.47437 * 330.00066 * 14 12 10 18 18 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 19 19 C 1.38457 * 120.02050 * 284.72920 * 18 2 1 20 20 F 1.35097 * 120.02077 * 359.97108 * 19 18 2 21 21 C 1.38451 * 119.96058 * 179.74226 * 19 18 2 22 22 C 1.38221 * 120.00059 * 0.52783 * 21 19 18 23 23 C 1.38208 * 120.04204 * 359.72506 * 22 21 19 24 24 C 1.38290 * 120.01869 * 104.99846 * 18 2 1 25 25 Cl 1.73604 * 120.00344 * 359.97438 * 24 18 2 26 26 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 28 28 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 29 29 H 1.00898 * 110.99995 * 38.95403 * 4 2 1 30 30 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 32 32 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47487 * 300.00114 * 9 8 6 34 34 H 1.09002 * 109.47182 * 60.00342 * 9 8 6 35 35 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 36 36 H 1.08004 * 119.99793 * 180.24969 * 21 19 18 37 37 H 1.08002 * 119.98378 * 179.70077 * 22 21 19 38 38 H 1.07991 * 119.98261 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5872 -0.5217 3.5561 7 8 2.8676 -1.6985 3.4703 8 7 2.7280 0.1207 4.7326 9 6 3.2193 -0.6029 5.9078 10 6 3.2836 0.3359 7.0850 11 1 2.9876 1.3680 6.9694 12 6 3.7202 -0.1230 8.3097 13 7 4.0811 -1.3798 8.4504 14 14 3.8005 1.0408 9.7686 15 1 2.5069 1.0110 10.4973 16 1 4.8924 0.6162 10.6810 17 1 4.0659 2.4204 9.2874 18 6 2.0323 -0.7104 -1.2304 19 6 1.9759 -2.0919 -1.3042 20 9 1.4710 -2.8038 -0.2730 21 6 2.4329 -2.7430 -2.4373 22 6 2.9551 -2.0147 -3.4896 23 6 3.0163 -0.6361 -3.4139 24 6 2.5551 0.0167 -2.2841 25 17 2.6322 1.7484 -2.1902 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.4495 -1.4979 1.4101 30 1 1.0869 0.6164 2.5525 31 1 2.7587 1.0463 2.1182 32 1 2.5041 1.0619 4.8010 33 1 2.5428 -1.4263 6.1367 34 1 4.2146 -0.9968 5.7021 35 1 4.3880 -1.7027 9.3121 36 1 2.3854 -3.8204 -2.4972 37 1 3.3160 -2.5232 -4.3714 38 1 3.4241 -0.0680 -4.2368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775549984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:03 Heat of formation + Delta-G solvation = -66.044701 kcal Electronic energy + Delta-G solvation = -23144.291703 eV Core-core repulsion = 19347.811961 eV Total energy + Delta-G solvation = -3796.479742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.05577 -39.74976 -38.80055 -36.77734 -36.58480 -34.12330 -32.35932 -32.01020 -30.71259 -29.40053 -27.67672 -25.65799 -23.86299 -23.14368 -22.25038 -21.13161 -19.67789 -18.00231 -17.38301 -16.94639 -16.25056 -15.79817 -15.59603 -15.52338 -15.11894 -15.00374 -14.59868 -14.39914 -13.96374 -13.93113 -13.76810 -13.32970 -12.82273 -12.75287 -12.57389 -12.25863 -12.14240 -11.93325 -11.71693 -11.66117 -11.57920 -11.43439 -10.96588 -10.86409 -10.78001 -10.30379 -9.37921 -9.15701 -9.03518 -8.95225 -8.71685 -8.39866 -7.83770 -6.14964 -4.21873 0.68514 0.78846 1.72303 3.10279 3.24993 3.31034 3.33571 3.42013 3.76228 4.02112 4.23068 4.33488 4.47916 4.52948 4.64137 4.85121 4.95637 4.99018 5.17139 5.20975 5.35250 5.35991 5.48310 5.55484 5.61666 5.64685 5.76725 5.78058 5.87391 5.91786 6.42674 6.86172 7.33608 7.39311 7.47939 7.54949 7.69481 7.99231 8.66188 8.80912 9.14934 9.44847 10.95271 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.023294 B = 0.002633 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.755666 B =10630.634824 C =11228.625019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.116 3.884 3 H 0.101 0.899 4 N -0.666 5.666 5 C 0.040 3.960 6 C 0.496 3.504 7 O -0.541 6.541 8 N -0.714 5.714 9 C 0.251 3.749 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.093 4.093 19 C 0.136 3.864 20 F -0.121 7.121 21 C -0.152 4.152 22 C -0.083 4.083 23 C -0.124 4.124 24 C -0.006 4.006 25 Cl -0.057 7.057 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.358 0.642 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.390 0.610 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 3.914 -26.403 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.006 3.994 3 H 0.119 0.881 4 N -0.300 5.300 5 C -0.092 4.092 6 C 0.280 3.720 7 O -0.419 6.419 8 N -0.364 5.364 9 C 0.130 3.870 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.095 4.095 19 C 0.116 3.884 20 F -0.099 7.099 21 C -0.171 4.171 22 C -0.102 4.102 23 C -0.143 4.143 24 C -0.033 4.033 25 Cl -0.028 7.028 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.181 0.819 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.222 0.778 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.396 3.111 -26.373 27.099 hybrid contribution -0.972 1.127 1.320 1.990 sum -6.368 4.239 -25.053 26.195 Atomic orbital electron populations 1.22493 0.95627 1.02942 1.02891 1.20533 0.93238 0.98099 0.87544 0.88140 1.60229 1.58322 1.09292 1.02165 1.21873 1.00850 0.96079 0.90390 1.20312 0.79469 0.87916 0.84278 1.90674 1.50525 1.16047 1.84665 1.46432 1.65585 1.13827 1.10529 1.19084 0.95010 0.92433 0.80457 1.21231 1.46032 0.96514 0.94349 0.91922 1.24958 0.94830 0.95338 0.98928 1.69975 1.42950 1.14382 1.24971 0.86418 0.77823 0.80751 0.81925 1.20486 1.21000 1.19750 1.19655 1.01451 0.92170 0.96246 1.17261 0.97548 0.88304 0.85293 1.91511 1.84267 1.77628 1.56527 1.21290 1.01287 1.01518 0.92998 1.20924 0.97814 0.92979 0.98440 1.21053 1.01233 0.94753 0.97223 1.20495 1.02059 0.85098 0.95656 1.98376 1.96966 1.09392 1.98024 0.91888 0.91501 0.91614 0.81949 0.92627 0.88511 0.77809 0.95628 0.95536 0.92453 0.84081 0.84142 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.10 37.15 0.34 -1.43 16 2 C 0.12 1.34 2.48 -68.87 -0.17 1.17 16 3 H 0.10 1.10 6.03 -51.93 -0.31 0.79 16 4 N -0.67 -9.79 5.29 -109.22 -0.58 -10.37 16 5 C 0.04 0.59 5.97 -4.97 -0.03 0.56 16 6 C 0.50 10.11 7.87 -10.98 -0.09 10.02 16 7 O -0.54 -13.43 16.20 5.56 0.09 -13.34 16 8 N -0.71 -15.21 5.55 -61.47 -0.34 -15.55 16 9 C 0.25 6.76 5.43 -5.19 -0.03 6.73 16 10 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 11 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 14 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C -0.09 -1.05 4.95 -104.52 -0.52 -1.57 16 19 C 0.14 1.58 7.00 -39.42 -0.28 1.30 16 20 F -0.12 -1.63 14.34 2.25 0.03 -1.59 16 21 C -0.15 -1.36 10.03 -39.51 -0.40 -1.76 16 22 C -0.08 -0.60 10.04 -39.60 -0.40 -0.99 16 23 C -0.12 -0.97 9.83 -39.54 -0.39 -1.36 16 24 C -0.01 -0.06 6.31 -39.51 -0.25 -0.31 16 25 Cl -0.06 -0.52 27.08 -51.86 -1.40 -1.92 16 26 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 27 H 0.07 0.62 7.45 -51.93 -0.39 0.23 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.36 5.64 6.40 -39.29 -0.25 5.39 16 30 H 0.06 0.68 7.44 -51.93 -0.39 0.30 16 31 H 0.10 1.26 8.06 -51.93 -0.42 0.84 16 32 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -33.14 342.21 -8.51 -41.65 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.56 Total: 6.79 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.62 Total: -1.16 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.18 Total: -51.56 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.03 Total: -1.59 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.40 Total: -1.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.14 -8.51 -41.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775549984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.398 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds