Wall clock time and date at job start Tue Mar 31 2020 10:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47470 * 2 1 4 4 N 1.46902 * 109.47245 * 239.99935 * 2 1 3 5 5 C 1.46896 * 110.99944 * 84.99887 * 4 2 1 6 6 C 1.50705 * 109.47089 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99545 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99913 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99793 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47110 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99740 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00173 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00122 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99776 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46984 * 90.00335 * 14 12 10 16 16 H 1.48498 * 109.47217 * 209.99844 * 14 12 10 17 17 H 1.48497 * 109.47546 * 330.00320 * 14 12 10 18 18 C 1.50706 * 109.46971 * 120.00256 * 2 1 3 19 19 C 1.38455 * 120.02092 * 74.72227 * 18 2 1 20 20 F 1.35104 * 120.01815 * 359.97438 * 19 18 2 21 21 C 1.38447 * 119.95831 * 179.74290 * 19 18 2 22 22 C 1.38224 * 120.00357 * 0.53080 * 21 19 18 23 23 C 1.38204 * 120.03873 * 359.72820 * 22 21 19 24 24 C 1.38296 * 120.01654 * 254.99651 * 18 2 1 25 25 Cl 1.73605 * 119.99887 * 359.97438 * 24 18 2 26 26 H 1.09000 * 109.47047 * 300.00042 * 1 2 3 27 27 H 1.09002 * 109.46993 * 59.99895 * 1 2 3 28 28 H 1.09003 * 109.47470 * 179.97438 * 1 2 3 29 29 H 1.00904 * 111.00084 * 208.96059 * 4 2 1 30 30 H 1.08999 * 109.47342 * 300.00309 * 5 4 2 31 31 H 1.08999 * 109.46871 * 60.00370 * 5 4 2 32 32 H 0.97002 * 120.00199 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47212 * 299.99804 * 9 8 6 34 34 H 1.08999 * 109.47151 * 59.99957 * 9 8 6 35 35 H 0.97000 * 119.99875 * 180.02562 * 13 12 10 36 36 H 1.08004 * 119.99959 * 180.25496 * 21 19 18 37 37 H 1.08001 * 119.97920 * 179.73990 * 22 21 19 38 38 H 1.07991 * 119.98552 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5873 -0.5219 -3.5560 7 8 2.8669 -1.6990 -3.4703 8 7 2.7282 0.1204 -4.7325 9 6 3.2185 -0.6035 -5.9080 10 6 3.2831 0.3353 -7.0852 11 1 2.9879 1.3677 -6.9693 12 6 3.7178 -0.1241 -8.3103 13 7 3.7737 0.6951 -9.3377 14 14 4.2276 -1.9100 -8.5108 15 1 3.0471 -2.7205 -8.9044 16 1 5.2709 -2.0118 -9.5626 17 1 4.7699 -2.4174 -7.2249 18 6 2.0323 -0.7105 1.2305 19 6 1.9653 -2.0912 1.3090 20 9 1.4492 -2.8023 0.2827 21 6 2.4321 -2.7429 2.4378 22 6 2.9544 -2.0146 3.4901 23 6 3.0163 -0.6361 3.4140 24 6 2.5551 0.0167 2.2842 25 17 2.6336 1.7484 2.1895 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.9173 -1.1206 -1.0287 30 1 1.0871 0.6163 -2.5525 31 1 2.7588 1.0461 -2.1182 32 1 2.5043 1.0617 -4.8010 33 1 4.2136 -0.9983 -5.7028 34 1 2.5412 -1.4263 -6.1367 35 1 4.0792 0.3718 -10.1997 36 1 2.3840 -3.8202 2.4980 37 1 3.3145 -2.5232 4.3722 38 1 3.4241 -0.0679 4.2368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775549986.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:06 Heat of formation + Delta-G solvation = -60.935257 kcal Electronic energy + Delta-G solvation = -23204.329292 eV Core-core repulsion = 19408.071112 eV Total energy + Delta-G solvation = -3796.258180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.96127 -39.88483 -38.93350 -36.87957 -36.55338 -34.24534 -32.40385 -32.09454 -30.80315 -29.47725 -28.29209 -25.96960 -23.74895 -23.21588 -21.87885 -20.83965 -19.87327 -18.10109 -17.44001 -17.11150 -16.55676 -15.91689 -15.75036 -15.51589 -15.32579 -15.07653 -14.55648 -14.38701 -14.00618 -13.85217 -13.69705 -13.38961 -12.97553 -12.83211 -12.52363 -12.36390 -12.16413 -12.12537 -11.89667 -11.73921 -11.64496 -11.59448 -11.00225 -10.82969 -10.73784 -9.95899 -9.48511 -9.30134 -9.15058 -9.04264 -8.76569 -8.47231 -8.10982 -6.20544 -4.22667 0.55480 0.66790 1.61609 2.99751 3.25698 3.29522 3.34655 3.43643 3.64464 3.94642 4.13565 4.25846 4.34921 4.43235 4.57343 4.77068 4.93068 5.09341 5.14834 5.17811 5.31342 5.41282 5.45711 5.53725 5.55752 5.59769 5.69611 5.76839 5.77807 6.11589 6.34574 6.75253 6.89562 7.09387 7.25390 7.27075 7.41451 8.15774 8.53812 8.76666 8.97321 9.39905 10.91425 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.002801 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.648882 B = 9992.748294 C =10610.699411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.121 3.879 3 H 0.067 0.933 4 N -0.659 5.659 5 C 0.040 3.960 6 C 0.499 3.501 7 O -0.544 6.544 8 N -0.707 5.707 9 C 0.222 3.778 10 C -0.543 4.543 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.893 5.893 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.261 1.261 18 C -0.123 4.123 19 C 0.140 3.860 20 F -0.107 7.107 21 C -0.156 4.156 22 C -0.078 4.078 23 C -0.127 4.127 24 C -0.004 4.004 25 Cl -0.054 7.054 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.351 0.649 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.396 0.604 33 H 0.024 0.976 34 H 0.021 0.979 35 H 0.267 0.733 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 -0.559 29.257 29.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 H 0.085 0.915 4 N -0.292 5.292 5 C -0.092 4.092 6 C 0.283 3.717 7 O -0.421 6.421 8 N -0.357 5.357 9 C 0.099 3.901 10 C -0.581 4.581 11 H 0.097 0.903 12 C -0.127 4.127 13 N -0.530 5.530 14 Si 0.704 3.296 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.126 4.126 19 C 0.119 3.881 20 F -0.085 7.085 21 C -0.175 4.175 22 C -0.096 4.096 23 C -0.145 4.145 24 C -0.031 4.031 25 Cl -0.025 7.025 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.171 0.829 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.254 -1.512 28.847 29.198 hybrid contribution 0.874 0.204 -0.291 0.944 sum -3.379 -1.308 28.556 28.785 Atomic orbital electron populations 1.21794 0.92917 1.03082 1.01707 1.20543 0.96831 0.95846 0.85658 0.91507 1.60266 1.34909 1.31618 1.02443 1.21887 1.02430 0.94253 0.90629 1.20355 0.78952 0.87823 0.84527 1.90665 1.50692 1.15869 1.84909 1.46156 1.65567 1.14047 1.09925 1.19471 0.94443 0.93198 0.82939 1.21100 1.46344 0.97860 0.92795 0.90269 1.24800 0.94457 0.97967 0.95432 1.69884 1.46459 1.35467 1.01237 0.86808 0.79073 0.85053 0.78705 1.19818 1.20928 1.18512 1.19855 1.02852 0.92552 0.97300 1.17339 0.96576 0.88331 0.85819 1.91659 1.83384 1.77223 1.56277 1.21357 1.01384 1.01643 0.93109 1.20973 0.97327 0.92971 0.98347 1.21070 1.01438 0.94782 0.97248 1.20580 1.01679 0.85250 0.95601 1.98388 1.96897 1.09199 1.98017 0.92421 0.91664 0.91494 0.82907 0.88183 0.92500 0.77086 0.95804 0.96151 0.92274 0.83950 0.84053 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.34 37.16 0.35 -1.07 16 2 C 0.12 1.34 2.48 -68.86 -0.17 1.17 16 3 H 0.07 0.70 6.03 -51.93 -0.31 0.39 16 4 N -0.66 -9.14 4.66 -109.22 -0.51 -9.65 16 5 C 0.04 0.56 5.97 -4.98 -0.03 0.53 16 6 C 0.50 9.61 7.87 -10.98 -0.09 9.52 16 7 O -0.54 -12.63 16.20 5.55 0.09 -12.54 16 8 N -0.71 -14.43 5.55 -61.47 -0.34 -14.77 16 9 C 0.22 5.53 4.50 -5.19 -0.02 5.51 16 10 C -0.54 -15.03 9.83 -34.44 -0.34 -15.37 16 11 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 12 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 13 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 14 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 18 C -0.12 -1.29 4.67 -104.52 -0.49 -1.78 16 19 C 0.14 1.50 6.78 -39.42 -0.27 1.24 16 20 F -0.11 -1.44 15.25 2.25 0.03 -1.41 16 21 C -0.16 -1.26 10.03 -39.51 -0.40 -1.66 16 22 C -0.08 -0.49 10.04 -39.60 -0.40 -0.89 16 23 C -0.13 -0.89 9.83 -39.54 -0.39 -1.28 16 24 C 0.00 -0.03 6.31 -39.51 -0.25 -0.28 16 25 Cl -0.05 -0.47 27.08 -51.86 -1.40 -1.87 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 28 H 0.07 0.77 7.61 -51.93 -0.40 0.37 16 29 H 0.35 5.23 7.78 -39.29 -0.31 4.93 16 30 H 0.10 1.23 7.44 -51.93 -0.39 0.84 16 31 H 0.06 0.68 8.05 -51.93 -0.42 0.27 16 32 H 0.40 7.04 8.32 -40.82 -0.34 6.70 16 33 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 34 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -32.92 339.95 -8.07 -40.99 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.58 Total: 5.27 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.59 Total: -2.26 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.08 Total: -50.35 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.03 Total: -1.41 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.40 Total: -1.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.92 -8.07 -40.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775549986.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.941 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds