Wall clock time and date at job start Tue Mar 31 2020 10:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47470 * 2 1 4 4 N 1.46902 * 109.47245 * 239.99935 * 2 1 3 5 5 C 1.46896 * 110.99944 * 84.99887 * 4 2 1 6 6 C 1.50705 * 109.47089 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99545 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99913 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99793 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47110 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99740 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00173 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00122 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99776 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46984 * 90.00335 * 14 12 10 16 16 H 1.48498 * 109.47217 * 209.99844 * 14 12 10 17 17 H 1.48497 * 109.47546 * 330.00320 * 14 12 10 18 18 C 1.50706 * 109.46971 * 120.00256 * 2 1 3 19 19 C 1.38455 * 120.02092 * 74.72227 * 18 2 1 20 20 F 1.35104 * 120.01815 * 359.97438 * 19 18 2 21 21 C 1.38447 * 119.95831 * 179.74290 * 19 18 2 22 22 C 1.38224 * 120.00357 * 0.53080 * 21 19 18 23 23 C 1.38204 * 120.03873 * 359.72820 * 22 21 19 24 24 C 1.38296 * 120.01654 * 254.99651 * 18 2 1 25 25 Cl 1.73605 * 119.99887 * 359.97438 * 24 18 2 26 26 H 1.09000 * 109.47047 * 300.00042 * 1 2 3 27 27 H 1.09002 * 109.46993 * 59.99895 * 1 2 3 28 28 H 1.09003 * 109.47470 * 179.97438 * 1 2 3 29 29 H 1.00904 * 111.00084 * 208.96059 * 4 2 1 30 30 H 1.08999 * 109.47342 * 300.00309 * 5 4 2 31 31 H 1.08999 * 109.46871 * 60.00370 * 5 4 2 32 32 H 0.97002 * 120.00199 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47212 * 299.99804 * 9 8 6 34 34 H 1.08999 * 109.47151 * 59.99957 * 9 8 6 35 35 H 0.97000 * 119.99875 * 180.02562 * 13 12 10 36 36 H 1.08004 * 119.99959 * 180.25496 * 21 19 18 37 37 H 1.08001 * 119.97920 * 179.73990 * 22 21 19 38 38 H 1.07991 * 119.98552 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5873 -0.5219 -3.5560 7 8 2.8669 -1.6990 -3.4703 8 7 2.7282 0.1204 -4.7325 9 6 3.2185 -0.6035 -5.9080 10 6 3.2831 0.3353 -7.0852 11 1 2.9879 1.3677 -6.9693 12 6 3.7178 -0.1241 -8.3103 13 7 3.7737 0.6951 -9.3377 14 14 4.2276 -1.9100 -8.5108 15 1 3.0471 -2.7205 -8.9044 16 1 5.2709 -2.0118 -9.5626 17 1 4.7699 -2.4174 -7.2249 18 6 2.0323 -0.7105 1.2305 19 6 1.9653 -2.0912 1.3090 20 9 1.4492 -2.8023 0.2827 21 6 2.4321 -2.7429 2.4378 22 6 2.9544 -2.0146 3.4901 23 6 3.0163 -0.6361 3.4140 24 6 2.5551 0.0167 2.2842 25 17 2.6336 1.7484 2.1895 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.9173 -1.1206 -1.0287 30 1 1.0871 0.6163 -2.5525 31 1 2.7588 1.0461 -2.1182 32 1 2.5043 1.0617 -4.8010 33 1 4.2136 -0.9983 -5.7028 34 1 2.5412 -1.4263 -6.1367 35 1 4.0792 0.3718 -10.1997 36 1 2.3840 -3.8202 2.4980 37 1 3.3145 -2.5232 4.3722 38 1 3.4241 -0.0679 4.2368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775549986.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:05 Heat of formation + Delta-G solvation = -83.661852 kcal Electronic energy + Delta-G solvation = -23205.314791 eV Core-core repulsion = 19408.071112 eV Total energy + Delta-G solvation = -3797.243679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.81125 -40.77571 -40.28023 -37.53972 -37.50991 -36.11731 -34.41478 -33.08867 -31.42919 -30.48528 -29.91117 -27.27644 -24.64351 -23.97141 -23.60541 -21.65628 -21.50219 -19.33348 -18.68091 -17.98950 -17.87936 -17.14862 -16.99090 -16.65614 -16.55978 -16.06025 -15.76399 -15.60918 -15.28846 -15.00778 -14.66427 -14.50519 -14.27979 -14.16571 -14.11408 -13.43349 -13.32831 -13.09334 -12.94810 -12.78823 -12.69177 -12.56855 -12.37239 -12.30068 -11.94541 -11.66743 -11.57562 -10.92940 -10.81223 -9.94043 -9.90286 -9.70864 -9.47130 -8.41143 -6.47978 -0.06392 0.02880 0.97407 1.31747 1.33877 1.46614 1.73054 2.25625 2.28242 2.43774 2.94243 3.13484 3.28868 3.39356 3.84856 3.88485 3.91307 4.20424 4.25003 4.26152 4.38661 4.42824 4.47918 4.73596 4.79840 4.82310 4.95353 5.01324 5.02113 5.10001 5.21452 5.25103 5.28757 5.51586 5.71215 5.85687 6.09358 6.18102 6.53061 6.85578 7.15065 7.42169 8.73600 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.002801 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.648882 B = 9992.748294 C =10610.699411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.123 3.877 3 H 0.076 0.924 4 N -0.674 5.674 5 C 0.053 3.947 6 C 0.499 3.501 7 O -0.585 6.585 8 N -0.706 5.706 9 C 0.233 3.767 10 C -0.546 4.546 11 H 0.060 0.940 12 C 0.027 3.973 13 N -0.931 5.931 14 Si 0.937 3.063 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.262 1.262 18 C -0.137 4.137 19 C 0.109 3.891 20 F -0.132 7.132 21 C -0.157 4.157 22 C -0.066 4.066 23 C -0.121 4.121 24 C -0.013 4.013 25 Cl -0.054 7.054 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.342 0.658 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.409 0.591 33 H 0.011 0.989 34 H 0.009 0.991 35 H 0.273 0.727 36 H 0.157 0.843 37 H 0.178 0.822 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 -0.669 31.745 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.015 3.985 3 H 0.093 0.907 4 N -0.306 5.306 5 C -0.078 4.078 6 C 0.286 3.714 7 O -0.465 6.465 8 N -0.357 5.357 9 C 0.109 3.891 10 C -0.584 4.584 11 H 0.079 0.921 12 C -0.174 4.174 13 N -0.570 5.570 14 Si 0.761 3.239 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.186 1.186 18 C -0.139 4.139 19 C 0.089 3.911 20 F -0.111 7.111 21 C -0.176 4.176 22 C -0.084 4.084 23 C -0.139 4.139 24 C -0.041 4.041 25 Cl -0.025 7.025 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.161 0.839 30 H 0.140 0.860 31 H 0.102 0.898 32 H 0.245 0.755 33 H 0.029 0.971 34 H 0.027 0.973 35 H 0.082 0.918 36 H 0.174 0.826 37 H 0.196 0.804 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.999 -1.585 31.359 31.652 hybrid contribution 0.783 0.290 -0.956 1.270 sum -3.215 -1.295 30.402 30.599 Atomic orbital electron populations 1.21773 0.92590 1.02250 1.02562 1.20560 0.97013 0.95992 0.84982 0.90678 1.60265 1.34524 1.32342 1.03509 1.21831 1.03833 0.93964 0.88208 1.21245 0.77515 0.87478 0.85205 1.90644 1.52321 1.17984 1.85580 1.46003 1.65749 1.14622 1.09330 1.19064 0.93660 0.92579 0.83759 1.21295 1.45703 0.97529 0.93870 0.92143 1.25593 0.94565 1.01969 0.95255 1.69981 1.47642 1.37427 1.01919 0.85861 0.79139 0.80176 0.78727 1.19072 1.19680 1.18631 1.19817 1.03967 0.92579 0.97540 1.17694 0.98315 0.88717 0.86347 1.91590 1.84120 1.77769 1.57590 1.21637 1.00690 1.02621 0.92605 1.21401 0.95622 0.92717 0.98682 1.21452 1.00094 0.95332 0.97046 1.20716 1.02086 0.85291 0.95966 1.98385 1.96920 1.09178 1.98036 0.90920 0.91404 0.93132 0.83871 0.86005 0.89821 0.75515 0.97078 0.97334 0.91824 0.82559 0.80428 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.34 71.98 0.67 -1.99 16 2 C 0.12 2.61 2.48 44.17 0.11 2.72 16 3 H 0.08 1.45 6.03 -2.39 -0.01 1.43 16 4 N -0.67 -18.36 4.66 -499.45 -2.33 -20.68 16 5 C 0.05 1.41 5.97 85.56 0.51 1.92 16 6 C 0.50 18.98 7.87 87.66 0.69 19.67 16 7 O -0.58 -27.42 16.20 -3.05 -0.05 -27.47 16 8 N -0.71 -28.59 5.55 -466.77 -2.59 -31.18 16 9 C 0.23 11.69 4.50 85.63 0.38 12.08 16 10 C -0.55 -30.52 9.83 25.60 0.25 -30.27 16 11 H 0.06 3.53 7.84 -2.91 -0.02 3.50 16 12 C 0.03 1.52 5.47 84.65 0.46 1.98 16 13 N -0.93 -56.06 13.96 21.45 0.30 -55.76 16 14 Si 0.94 44.85 27.47 68.60 1.88 46.73 16 15 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.26 -12.50 6.54 99.48 0.65 -11.85 16 18 C -0.14 -2.73 4.67 -19.80 -0.09 -2.82 16 19 C 0.11 2.31 6.78 22.37 0.15 2.46 16 20 F -0.13 -3.67 15.25 44.97 0.69 -2.98 16 21 C -0.16 -2.27 10.03 22.32 0.22 -2.05 16 22 C -0.07 -0.62 10.04 22.26 0.22 -0.40 16 23 C -0.12 -1.34 9.83 22.30 0.22 -1.12 16 24 C -0.01 -0.21 6.31 22.32 0.14 -0.07 16 25 Cl -0.05 -0.84 27.08 -2.72 -0.07 -0.91 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.27 7.45 -2.39 -0.02 1.26 16 28 H 0.05 1.17 7.61 -2.39 -0.02 1.15 16 29 H 0.34 10.27 7.78 -89.69 -0.70 9.57 16 30 H 0.12 2.73 7.44 -2.39 -0.02 2.71 16 31 H 0.08 1.81 8.05 -2.39 -0.02 1.79 16 32 H 0.41 14.27 8.32 -92.71 -0.77 13.50 16 33 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 34 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 38 H 0.16 0.99 8.06 -2.92 -0.02 0.96 16 Total: -1.00 -72.07 339.95 1.37 -70.70 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -0.41 Total: 19.42 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 3.95 Total: 2.13 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.62 Total: -107.62 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.69 Total: -2.98 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.07 Total: -0.91 kcal Total: -72.07 1.37 -70.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775549986.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.959 kcal (2) G-P(sol) polarization free energy of solvation -72.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds