Wall clock time and date at job start Tue Mar 31 2020 10:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.62707 * 2 1 4 4 C 1.53244 * 109.62942 * 239.40628 * 2 1 3 5 5 N 1.46477 * 109.85763 * 178.29057 * 4 2 1 6 6 C 1.46900 * 110.99971 * 197.76415 * 5 4 2 7 7 N 1.46506 * 109.47029 * 300.06519 * 6 5 4 8 8 N 1.40164 * 126.14359 * 89.97851 * 7 6 5 9 9 C 1.32232 * 107.76046 * 180.02562 * 8 7 6 10 10 C 1.40122 * 125.92892 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99923 * 186.17492 * 10 9 8 12 12 C 1.40032 * 119.99765 * 6.16343 * 10 9 8 13 13 N 1.30797 * 119.99955 * 184.38036 * 12 10 9 14 14 Si 1.86793 * 120.00309 * 4.38540 * 12 10 9 15 15 H 1.48504 * 109.47573 * 179.97438 * 14 12 10 16 16 H 1.48508 * 109.47458 * 59.99311 * 14 12 10 17 17 H 1.48500 * 109.47321 * 299.99710 * 14 12 10 18 18 N 1.38498 * 108.14467 * 0.26370 * 9 8 7 19 19 C 1.46504 * 125.83657 * 179.74074 * 18 9 8 20 20 C 1.34725 * 108.33024 * 359.56228 * 18 9 8 21 21 S 1.71202 * 125.97127 * 180.18314 * 20 18 9 22 22 C 1.46471 * 112.55464 * 72.65836 * 5 4 2 23 23 C 1.53254 * 109.85835 * 287.34104 * 22 5 4 24 24 S 1.81893 * 108.50380 * 62.00649 * 23 22 5 25 25 H 1.09001 * 109.47420 * 299.61066 * 1 2 3 26 26 H 1.08998 * 109.46991 * 59.60787 * 1 2 3 27 27 H 1.08997 * 109.47097 * 179.60673 * 1 2 3 28 28 H 1.08997 * 109.41337 * 58.17785 * 4 2 1 29 29 H 1.09001 * 109.41075 * 298.40778 * 4 2 1 30 30 H 1.09000 * 109.46710 * 180.02562 * 6 5 4 31 31 H 1.08995 * 109.46988 * 60.06805 * 6 5 4 32 32 H 0.96999 * 120.00122 * 354.88379 * 13 12 10 33 33 H 1.08997 * 109.47664 * 89.99566 * 19 18 9 34 34 H 1.08997 * 109.47268 * 210.00063 * 19 18 9 35 35 H 1.09006 * 109.47013 * 329.99686 * 19 18 9 36 36 H 1.09004 * 109.40926 * 47.46344 * 22 5 4 37 37 H 1.09001 * 109.40317 * 167.30529 * 22 5 4 38 38 H 1.08999 * 109.62690 * 181.70959 * 23 22 5 39 39 H 1.08997 * 109.62754 * 302.10016 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7346 -1.2425 5 7 3.5090 -0.7023 -1.2686 6 6 4.0185 -1.0089 -2.6119 7 7 3.5696 -2.3451 -3.0112 8 7 2.3831 -2.6493 -3.6926 9 6 2.3422 -3.9595 -3.8661 10 6 1.3198 -4.6727 -4.5060 11 1 1.3340 -5.7525 -4.5076 12 6 0.2794 -3.9851 -5.1431 13 7 -0.7192 -4.6486 -5.6659 14 14 0.3178 -2.1204 -5.2464 15 1 -0.8894 -1.6394 -5.9651 16 1 1.5348 -1.6902 -5.9807 17 1 0.3389 -1.5490 -3.8758 18 7 3.4827 -4.5053 -3.3008 19 6 3.8273 -5.9289 -3.2689 20 6 4.2231 -3.5029 -2.7888 21 16 5.7276 -3.6710 -1.9892 22 6 4.1084 -1.5856 -0.2656 23 6 3.9230 -0.9868 1.1328 24 16 2.1411 -0.8668 1.4778 25 1 -0.3634 0.5078 0.8934 26 1 -0.3633 0.5199 -0.8864 27 1 -0.3633 -1.0276 -0.0071 28 1 1.6560 -0.2491 -2.1375 29 1 1.7059 -1.7703 -1.2174 30 1 5.1080 -0.9785 -2.6028 31 1 3.6409 -0.2718 -3.3206 32 1 -0.7036 -5.6184 -5.6784 33 1 4.4045 -6.1831 -4.1578 34 1 4.4197 -6.1394 -2.3785 35 1 2.9139 -6.5234 -3.2465 36 1 3.6261 -2.5622 -0.3084 37 1 5.1728 -1.6980 -0.4720 38 1 4.3967 -1.6316 1.8730 39 1 4.3737 0.0050 1.1692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794626161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:50 Heat of formation + Delta-G solvation = 57.947013 kcal Electronic energy + Delta-G solvation = -23145.272004 eV Core-core repulsion = 19954.718580 eV Total energy + Delta-G solvation = -3190.553424 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.01341 -39.60994 -36.34185 -35.82488 -34.57480 -33.24112 -31.82311 -29.22808 -28.40787 -27.30604 -25.83334 -23.94332 -23.12931 -22.32704 -22.09304 -20.36406 -19.00302 -17.91062 -17.72190 -17.39271 -16.94806 -16.45676 -16.17466 -15.91197 -15.56080 -15.49703 -15.03916 -14.92132 -14.44753 -14.28454 -13.88105 -13.67218 -13.62807 -13.25135 -13.06643 -12.97269 -12.89884 -12.61120 -12.51957 -12.30991 -11.95547 -11.73266 -11.61330 -11.28377 -11.03737 -10.80764 -10.72628 -10.12111 -9.64009 -8.82042 -8.79057 -8.60957 -7.26162 0.31555 0.58134 0.71692 0.99972 1.38313 1.48491 1.56180 1.77206 1.79053 2.14494 2.37878 2.52861 2.84405 3.39326 3.65551 3.76748 3.88554 4.00593 4.03431 4.10425 4.23046 4.29290 4.30979 4.40745 4.48806 4.55039 4.58954 4.65569 4.74821 4.81052 4.86505 4.91303 4.94273 5.13723 5.20935 5.44142 5.56021 5.71874 5.82692 6.05676 6.27490 6.84915 7.79336 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.006971 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.411784 B = 4015.802425 C = 5485.276603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.030 4.030 3 H 0.112 0.888 4 C 0.068 3.932 5 N -0.527 5.527 6 C 0.303 3.697 7 N -0.386 5.386 8 N -0.442 5.442 9 C 0.371 3.629 10 C -0.490 4.490 11 H 0.094 0.906 12 C 0.042 3.958 13 N -0.804 5.804 14 Si 1.127 2.873 15 H -0.296 1.296 16 H -0.282 1.282 17 H -0.253 1.253 18 N -0.517 5.517 19 C 0.096 3.904 20 C 0.468 3.532 21 S -0.701 6.701 22 C 0.063 3.937 23 C -0.059 4.059 24 S -0.311 6.311 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.019 0.981 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.291 0.709 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.013 0.987 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 7.404 5.916 9.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 H 0.130 0.870 4 C -0.061 4.061 5 N -0.250 5.250 6 C 0.095 3.905 7 N -0.177 5.177 8 N -0.279 5.279 9 C 0.124 3.876 10 C -0.532 4.532 11 H 0.112 0.888 12 C -0.181 4.181 13 N -0.427 5.427 14 Si 0.953 3.047 15 H -0.225 1.225 16 H -0.208 1.208 17 H -0.179 1.179 18 N -0.217 5.217 19 C -0.046 4.046 20 C 0.099 3.901 21 S -0.577 6.577 22 C -0.066 4.066 23 C -0.207 4.207 24 S -0.085 6.085 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.037 0.963 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.031 0.969 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.958 9.572 6.774 11.765 hybrid contribution 0.857 -3.179 -1.140 3.484 sum 1.814 6.393 5.634 8.712 Atomic orbital electron populations 1.21602 0.90636 1.02578 1.04022 1.23238 0.99808 1.01243 0.91623 0.86997 1.22223 0.86535 0.98713 0.98657 1.61923 1.07692 1.51386 1.04027 1.23026 1.01040 0.77130 0.89352 1.50307 1.15535 1.07169 1.44641 1.77678 1.05880 1.10525 1.33848 1.21322 0.86591 0.88671 0.90984 1.19706 1.05412 0.96005 1.32097 0.88783 1.27956 0.89138 1.11736 0.89272 1.70645 1.27658 1.12370 1.32028 0.82529 0.74802 0.68469 0.78892 1.22487 1.20820 1.17890 1.46171 1.17718 1.09456 1.48387 1.22020 1.03011 0.74732 1.04813 1.23208 0.92976 0.83922 0.90009 1.92798 1.09637 1.93888 1.61360 1.22454 1.01652 0.92072 0.90443 1.23511 0.92679 1.05880 0.98654 1.86958 1.10428 1.78979 1.32158 0.90148 0.89399 0.93405 0.89162 0.96253 0.85674 0.85551 0.89686 0.89751 0.88639 0.88607 0.96903 0.87353 0.86783 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.23 71.98 0.66 -2.30 16 2 C -0.03 -0.77 3.34 30.68 0.10 -0.67 16 3 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 4 C 0.07 2.09 3.95 86.47 0.34 2.43 16 5 N -0.53 -15.53 4.60 -909.84 -4.19 -19.72 16 6 C 0.30 9.48 6.12 170.80 1.05 10.52 16 7 N -0.39 -15.09 3.05 -359.72 -1.10 -16.19 16 8 N -0.44 -19.04 7.29 -55.17 -0.40 -19.45 16 9 C 0.37 16.46 7.25 133.53 0.97 17.43 16 10 C -0.49 -22.27 9.43 23.16 0.22 -22.05 16 11 H 0.09 4.19 7.28 -2.91 -0.02 4.17 16 12 C 0.04 1.92 5.52 85.28 0.47 2.39 16 13 N -0.80 -37.63 13.65 21.84 0.30 -37.33 16 14 Si 1.13 46.07 25.89 68.60 1.78 47.84 16 15 H -0.30 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.25 -10.12 6.74 99.48 0.67 -9.45 16 18 N -0.52 -21.22 3.17 -548.31 -1.74 -22.96 16 19 C 0.10 3.14 10.66 127.77 1.36 4.51 16 20 C 0.47 19.40 6.89 179.06 1.23 20.63 16 21 S -0.70 -29.51 26.81 -56.49 -1.51 -31.02 16 22 C 0.06 1.97 3.84 86.47 0.33 2.30 16 23 C -0.06 -1.52 6.69 72.07 0.48 -1.04 16 24 S -0.31 -8.81 21.77 -56.49 -1.23 -10.04 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 28 H 0.09 2.75 7.91 -2.39 -0.02 2.73 16 29 H 0.02 0.75 7.68 -2.39 -0.02 0.73 16 30 H 0.13 3.78 7.44 -2.39 -0.02 3.76 16 31 H 0.13 3.49 8.07 -2.39 -0.02 3.47 16 32 H 0.29 13.04 8.72 -92.71 -0.81 12.24 16 33 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.10 3.07 7.62 -2.39 -0.02 3.06 16 35 H 0.10 2.89 7.27 -2.38 -0.02 2.87 16 36 H 0.01 0.49 7.20 -2.38 -0.02 0.48 16 37 H 0.11 3.57 6.22 -2.39 -0.01 3.56 16 38 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -54.60 332.52 0.10 -54.50 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.98 Total: 20.22 kcal Atomic # 6 Polarization: 26.93 SS G_CDS: 7.22 Total: 34.15 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -7.13 Total: -115.64 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.78 Total: 47.84 kcal Atomic # 16 Polarization: -38.32 SS G_CDS: -2.74 Total: -41.06 kcal Total: -54.60 0.10 -54.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794626161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.447 kcal (2) G-P(sol) polarization free energy of solvation -54.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds