Wall clock time and date at job start Tue Mar 31 2020 10:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.41363 * 2 1 4 4 C 1.53255 * 109.40805 * 240.15428 * 2 1 3 5 5 S 1.81901 * 108.50602 * 177.95755 * 4 2 1 6 6 C 1.81898 * 101.91219 * 51.30831 * 5 4 2 7 7 C 1.53243 * 108.50821 * 308.69130 * 6 5 4 8 8 N 1.46471 * 109.79355 * 62.04663 * 7 6 5 9 9 C 1.46901 * 111.00071 * 162.19845 * 8 7 6 10 10 N 1.46505 * 109.47003 * 304.71708 * 9 8 7 11 11 N 1.40155 * 126.14617 * 276.23087 * 10 9 8 12 12 C 1.32238 * 107.75858 * 179.88084 * 11 10 9 13 13 C 1.40126 * 125.92717 * 180.12748 * 12 11 10 14 14 H 1.08000 * 119.99699 * 174.76458 * 13 12 11 15 15 C 1.40036 * 120.00146 * 354.77985 * 13 12 11 16 16 N 1.30806 * 119.99799 * 5.82536 * 15 13 12 17 17 Si 1.86794 * 120.00306 * 185.82978 * 15 13 12 18 18 H 1.48500 * 109.47465 * 94.97663 * 17 15 13 19 19 H 1.48497 * 109.47418 * 214.98124 * 17 15 13 20 20 H 1.48503 * 109.46864 * 334.98038 * 17 15 13 21 21 N 1.38496 * 108.14652 * 0.37838 * 12 11 10 22 22 C 1.46501 * 125.83694 * 179.72214 * 21 12 11 23 23 C 1.34723 * 108.32835 * 359.75567 * 21 12 11 24 24 S 1.71203 * 125.97228 * 179.97438 * 23 21 12 25 25 H 1.09003 * 109.47202 * 186.86376 * 1 2 3 26 26 H 1.09000 * 109.47237 * 306.86979 * 1 2 3 27 27 H 1.09003 * 109.46997 * 66.86711 * 1 2 3 28 28 H 1.09004 * 109.62689 * 58.25302 * 4 2 1 29 29 H 1.08995 * 109.63135 * 297.66599 * 4 2 1 30 30 H 1.09007 * 109.63296 * 188.98808 * 6 5 4 31 31 H 1.09000 * 109.63547 * 68.39772 * 6 5 4 32 32 H 1.08996 * 109.41136 * 182.12115 * 7 6 5 33 33 H 1.09000 * 109.40870 * 301.97104 * 7 6 5 34 34 H 1.08997 * 109.47601 * 64.72004 * 9 8 7 35 35 H 1.09000 * 109.46989 * 184.72092 * 9 8 7 36 36 H 0.96998 * 119.99471 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47039 * 270.01592 * 22 21 12 38 38 H 1.09003 * 109.46916 * 30.01193 * 22 21 12 39 39 H 1.08994 * 109.47189 * 150.01185 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0280 0.0000 4 6 2.0392 -0.7194 -1.2538 5 16 3.8570 -0.6520 -1.2598 6 6 4.2611 -1.2695 0.4027 7 6 3.4461 -0.4745 1.4284 8 7 2.0155 -0.6887 1.1986 9 6 1.2295 -0.3055 2.3791 10 7 1.7229 -1.0327 3.5513 11 7 1.3605 -2.3323 3.9307 12 6 2.0212 -2.6284 5.0373 13 6 1.9443 -3.8369 5.7424 14 1 2.5906 -4.0094 6.5904 15 6 1.0297 -4.8211 5.3475 16 7 0.3283 -4.6613 4.2550 17 14 0.8113 -6.3618 6.3807 18 1 -0.3307 -6.1759 7.3115 19 1 0.5417 -7.5201 5.4915 20 1 2.0495 -6.6143 7.1608 21 7 2.7980 -1.5347 5.3816 22 6 3.6809 -1.4425 6.5471 23 6 2.6025 -0.5698 4.4619 24 16 3.3413 0.9745 4.4520 25 1 -0.3634 -1.0203 0.1228 26 1 -0.3634 0.6166 0.8221 27 1 -0.3633 0.4037 -0.9451 28 1 1.6514 -0.2233 -2.1435 29 1 1.7113 -1.7587 -1.2382 30 1 5.3253 -1.1330 0.5954 31 1 4.0062 -2.3270 0.4726 32 1 3.7052 -0.8073 2.4334 33 1 3.6741 0.5867 1.3282 34 1 1.3279 0.7667 2.5487 35 1 0.1809 -0.5524 2.2132 36 1 -0.3054 -5.3429 3.9817 37 1 3.1232 -1.0442 7.3947 38 1 4.0598 -2.4340 6.7951 39 1 4.5164 -0.7809 6.3185 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794634813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:53 Heat of formation + Delta-G solvation = 91.617506 kcal Electronic energy + Delta-G solvation = -22793.822821 eV Core-core repulsion = 19604.729459 eV Total energy + Delta-G solvation = -3189.093362 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05111 -38.56226 -34.62805 -33.98753 -32.66552 -31.24749 -29.87706 -27.33403 -27.23653 -26.65746 -24.40267 -22.57395 -21.68445 -20.97500 -20.00028 -17.87262 -16.82558 -16.78540 -16.12685 -15.85504 -15.40013 -15.11792 -14.80105 -14.52391 -14.06140 -13.83384 -13.42742 -13.25136 -12.70414 -12.57546 -12.28669 -12.19744 -12.15967 -11.96463 -11.86751 -11.66676 -11.55497 -11.16591 -11.10013 -10.72622 -10.64249 -10.56318 -10.09071 -9.64062 -9.60166 -9.28433 -8.94534 -8.26306 -7.59238 -7.10551 -6.88793 -6.79466 -5.20085 1.90219 2.18062 2.43739 2.61441 2.74242 2.87802 2.91969 3.22951 3.46832 3.59907 3.86800 4.06430 4.70066 4.77833 4.96157 5.08858 5.16225 5.24012 5.37196 5.41576 5.44412 5.49112 5.63830 5.67908 5.76493 5.78286 5.92543 6.01704 6.07331 6.14911 6.15573 6.28730 6.44428 6.74742 6.91483 6.99077 7.10353 7.50593 7.70471 8.15909 8.29093 9.06337 9.87612 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.005026 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.995956 B = 5569.394251 C = 6521.657066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.090 3.910 3 H 0.059 0.941 4 C -0.064 4.064 5 S -0.285 6.285 6 C -0.066 4.066 7 C 0.060 3.940 8 N -0.554 5.554 9 C 0.327 3.673 10 N -0.374 5.374 11 N -0.327 5.327 12 C 0.370 3.630 13 C -0.438 4.438 14 H 0.098 0.902 15 C 0.076 3.924 16 N -0.734 5.734 17 Si 0.928 3.072 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.259 1.259 21 N -0.513 5.513 22 C 0.099 3.901 23 C 0.462 3.538 24 S -0.713 6.713 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.286 0.714 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 0.849 -4.812 4.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.020 4.020 3 H 0.077 0.923 4 C -0.213 4.213 5 S -0.058 6.058 6 C -0.215 4.215 7 C -0.069 4.069 8 N -0.281 5.281 9 C 0.116 3.884 10 N -0.160 5.160 11 N -0.159 5.159 12 C 0.122 3.878 13 C -0.479 4.479 14 H 0.116 0.884 15 C -0.151 4.151 16 N -0.358 5.358 17 Si 0.751 3.249 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.183 1.183 21 N -0.213 5.213 22 C -0.044 4.044 23 C 0.092 3.908 24 S -0.589 6.589 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.042 1.189 -6.662 6.767 hybrid contribution -0.611 -0.928 2.064 2.344 sum -0.653 0.261 -4.598 4.652 Atomic orbital electron populations 1.22047 0.93506 1.03422 1.02317 1.21688 0.95776 0.95773 0.88810 0.92288 1.23531 0.92878 1.04851 1.00063 1.86681 1.08463 1.87269 1.23407 1.23519 1.02798 1.03020 0.92177 1.22296 0.86182 0.98915 0.99508 1.61282 1.03835 1.60045 1.02956 1.21835 0.96091 0.93344 0.77166 1.49176 1.33140 1.14173 1.19496 1.79479 1.29374 0.90771 1.16252 1.21380 0.86771 0.88367 0.91325 1.18359 1.20406 0.95571 1.13586 0.88441 1.25839 0.94143 1.00017 0.95067 1.69887 1.15345 1.32968 1.17565 0.85951 0.79966 0.79207 0.79748 1.19135 1.19752 1.18255 1.46006 1.39485 1.12614 1.23213 1.21779 0.93707 1.03616 0.85270 1.22968 0.89403 0.92765 0.85614 1.92836 1.67671 1.06632 1.91791 0.90872 0.91933 0.91569 0.87656 0.88930 0.87817 0.89258 0.89177 0.92405 0.90469 0.87334 0.90309 0.91357 0.89703 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.01 37.16 0.30 -1.45 16 2 C 0.09 1.22 2.50 -67.79 -0.17 1.05 16 3 H 0.06 0.82 7.91 -51.93 -0.41 0.41 16 4 C -0.06 -0.82 5.96 37.29 0.22 -0.60 16 5 S -0.29 -4.17 22.40 -107.50 -2.41 -6.57 16 6 C -0.07 -1.06 6.68 37.28 0.25 -0.81 16 7 C 0.06 1.08 4.84 -3.93 -0.02 1.06 16 8 N -0.55 -9.41 4.50 -230.88 -1.04 -10.45 16 9 C 0.33 6.06 5.22 -63.31 -0.33 5.73 16 10 N -0.37 -8.32 3.18 -65.05 -0.21 -8.52 16 11 N -0.33 -8.11 10.79 31.21 0.34 -7.77 16 12 C 0.37 8.86 7.50 -155.28 -1.16 7.69 16 13 C -0.44 -9.94 8.99 -38.20 -0.34 -10.28 16 14 H 0.10 1.99 7.08 -52.49 -0.37 1.62 16 15 C 0.08 1.68 5.49 -17.31 -0.10 1.59 16 16 N -0.73 -17.37 11.92 55.55 0.66 -16.71 16 17 Si 0.93 16.28 29.56 -169.99 -5.03 11.25 16 18 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 19 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 20 H -0.26 -4.40 7.11 56.52 0.40 -4.00 16 21 N -0.51 -11.21 3.17 -124.66 -0.39 -11.60 16 22 C 0.10 1.71 10.66 59.85 0.64 2.35 16 23 C 0.46 10.49 6.24 -86.94 -0.54 9.95 16 24 S -0.71 -16.67 28.36 -107.50 -3.05 -19.71 16 25 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 26 H 0.06 0.70 6.78 -51.93 -0.35 0.35 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.09 1.91 4.98 -51.93 -0.26 1.66 16 33 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16 34 H 0.08 1.44 7.45 -51.93 -0.39 1.06 16 35 H 0.11 1.90 6.22 -51.93 -0.32 1.58 16 36 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.28 7.27 -51.93 -0.38 0.91 16 39 H 0.09 1.53 7.61 -51.93 -0.40 1.13 16 LS Contribution 335.73 15.07 5.06 5.06 Total: -1.00 -28.52 335.73 -12.70 -41.21 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.38 Total: 7.54 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: -1.26 Total: 16.28 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.64 Total: -55.06 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Atomic # 16 Polarization: -20.83 SS G_CDS: -5.46 Total: -26.29 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.52 -12.70 -41.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794634813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.829 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds