Wall clock time and date at job start Tue Mar 31 2020 10:26:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08995 * 109.41363 * 2 1
4 4 C 1.53255 * 109.40805 * 240.15428 * 2 1 3
5 5 S 1.81901 * 108.50602 * 177.95755 * 4 2 1
6 6 C 1.81898 * 101.91219 * 51.30831 * 5 4 2
7 7 C 1.53243 * 108.50821 * 308.69130 * 6 5 4
8 8 N 1.46471 * 109.79355 * 62.04663 * 7 6 5
9 9 C 1.46901 * 111.00071 * 162.19845 * 8 7 6
10 10 N 1.46505 * 109.47003 * 304.71708 * 9 8 7
11 11 N 1.40155 * 126.14617 * 276.23087 * 10 9 8
12 12 C 1.32238 * 107.75858 * 179.88084 * 11 10 9
13 13 C 1.40126 * 125.92717 * 180.12748 * 12 11 10
14 14 H 1.08000 * 119.99699 * 174.76458 * 13 12 11
15 15 C 1.40036 * 120.00146 * 354.77985 * 13 12 11
16 16 N 1.30806 * 119.99799 * 5.82536 * 15 13 12
17 17 Si 1.86794 * 120.00306 * 185.82978 * 15 13 12
18 18 H 1.48500 * 109.47465 * 94.97663 * 17 15 13
19 19 H 1.48497 * 109.47418 * 214.98124 * 17 15 13
20 20 H 1.48503 * 109.46864 * 334.98038 * 17 15 13
21 21 N 1.38496 * 108.14652 * 0.37838 * 12 11 10
22 22 C 1.46501 * 125.83694 * 179.72214 * 21 12 11
23 23 C 1.34723 * 108.32835 * 359.75567 * 21 12 11
24 24 S 1.71203 * 125.97228 * 179.97438 * 23 21 12
25 25 H 1.09003 * 109.47202 * 186.86376 * 1 2 3
26 26 H 1.09000 * 109.47237 * 306.86979 * 1 2 3
27 27 H 1.09003 * 109.46997 * 66.86711 * 1 2 3
28 28 H 1.09004 * 109.62689 * 58.25302 * 4 2 1
29 29 H 1.08995 * 109.63135 * 297.66599 * 4 2 1
30 30 H 1.09007 * 109.63296 * 188.98808 * 6 5 4
31 31 H 1.09000 * 109.63547 * 68.39772 * 6 5 4
32 32 H 1.08996 * 109.41136 * 182.12115 * 7 6 5
33 33 H 1.09000 * 109.40870 * 301.97104 * 7 6 5
34 34 H 1.08997 * 109.47601 * 64.72004 * 9 8 7
35 35 H 1.09000 * 109.46989 * 184.72092 * 9 8 7
36 36 H 0.96998 * 119.99471 * 180.02562 * 16 15 13
37 37 H 1.08998 * 109.47039 * 270.01592 * 22 21 12
38 38 H 1.09003 * 109.46916 * 30.01193 * 22 21 12
39 39 H 1.08994 * 109.47189 * 150.01185 * 22 21 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8922 1.0280 0.0000
4 6 2.0392 -0.7194 -1.2538
5 16 3.8570 -0.6520 -1.2598
6 6 4.2611 -1.2695 0.4027
7 6 3.4461 -0.4745 1.4284
8 7 2.0155 -0.6887 1.1986
9 6 1.2295 -0.3055 2.3791
10 7 1.7229 -1.0327 3.5513
11 7 1.3605 -2.3323 3.9307
12 6 2.0212 -2.6284 5.0373
13 6 1.9443 -3.8369 5.7424
14 1 2.5906 -4.0094 6.5904
15 6 1.0297 -4.8211 5.3475
16 7 0.3283 -4.6613 4.2550
17 14 0.8113 -6.3618 6.3807
18 1 -0.3307 -6.1759 7.3115
19 1 0.5417 -7.5201 5.4915
20 1 2.0495 -6.6143 7.1608
21 7 2.7980 -1.5347 5.3816
22 6 3.6809 -1.4425 6.5471
23 6 2.6025 -0.5698 4.4619
24 16 3.3413 0.9745 4.4520
25 1 -0.3634 -1.0203 0.1228
26 1 -0.3634 0.6166 0.8221
27 1 -0.3633 0.4037 -0.9451
28 1 1.6514 -0.2233 -2.1435
29 1 1.7113 -1.7587 -1.2382
30 1 5.3253 -1.1330 0.5954
31 1 4.0062 -2.3270 0.4726
32 1 3.7052 -0.8073 2.4334
33 1 3.6741 0.5867 1.3282
34 1 1.3279 0.7667 2.5487
35 1 0.1809 -0.5524 2.2132
36 1 -0.3054 -5.3429 3.9817
37 1 3.1232 -1.0442 7.3947
38 1 4.0598 -2.4340 6.7951
39 1 4.5164 -0.7809 6.3185
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000794634813.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:26:53
Heat of formation + Delta-G solvation = 91.617506 kcal
Electronic energy + Delta-G solvation = -22793.822821 eV
Core-core repulsion = 19604.729459 eV
Total energy + Delta-G solvation = -3189.093362 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 314.093 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.05111 -38.56226 -34.62805 -33.98753 -32.66552 -31.24749 -29.87706 -27.33403
-27.23653 -26.65746 -24.40267 -22.57395 -21.68445 -20.97500 -20.00028 -17.87262
-16.82558 -16.78540 -16.12685 -15.85504 -15.40013 -15.11792 -14.80105 -14.52391
-14.06140 -13.83384 -13.42742 -13.25136 -12.70414 -12.57546 -12.28669 -12.19744
-12.15967 -11.96463 -11.86751 -11.66676 -11.55497 -11.16591 -11.10013 -10.72622
-10.64249 -10.56318 -10.09071 -9.64062 -9.60166 -9.28433 -8.94534 -8.26306
-7.59238 -7.10551 -6.88793 -6.79466 -5.20085 1.90219 2.18062 2.43739
2.61441 2.74242 2.87802 2.91969 3.22951 3.46832 3.59907 3.86800
4.06430 4.70066 4.77833 4.96157 5.08858 5.16225 5.24012 5.37196
5.41576 5.44412 5.49112 5.63830 5.67908 5.76493 5.78286 5.92543
6.01704 6.07331 6.14911 6.15573 6.28730 6.44428 6.74742 6.91483
6.99077 7.10353 7.50593 7.70471 8.15909 8.29093 9.06337 9.87612
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.013865 B = 0.005026 C = 0.004292
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2018.995956 B = 5569.394251 C = 6521.657066
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.090 3.910
3 H 0.059 0.941
4 C -0.064 4.064
5 S -0.285 6.285
6 C -0.066 4.066
7 C 0.060 3.940
8 N -0.554 5.554
9 C 0.327 3.673
10 N -0.374 5.374
11 N -0.327 5.327
12 C 0.370 3.630
13 C -0.438 4.438
14 H 0.098 0.902
15 C 0.076 3.924
16 N -0.734 5.734
17 Si 0.928 3.072
18 H -0.266 1.266
19 H -0.273 1.273
20 H -0.259 1.259
21 N -0.513 5.513
22 C 0.099 3.901
23 C 0.462 3.538
24 S -0.713 6.713
25 H 0.072 0.928
26 H 0.062 0.938
27 H 0.065 0.935
28 H 0.105 0.895
29 H 0.092 0.908
30 H 0.104 0.896
31 H 0.089 0.911
32 H 0.090 0.910
33 H 0.058 0.942
34 H 0.078 0.922
35 H 0.109 0.891
36 H 0.286 0.714
37 H 0.068 0.932
38 H 0.084 0.916
39 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.244 0.849 -4.812 4.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.020 4.020
3 H 0.077 0.923
4 C -0.213 4.213
5 S -0.058 6.058
6 C -0.215 4.215
7 C -0.069 4.069
8 N -0.281 5.281
9 C 0.116 3.884
10 N -0.160 5.160
11 N -0.159 5.159
12 C 0.122 3.878
13 C -0.479 4.479
14 H 0.116 0.884
15 C -0.151 4.151
16 N -0.358 5.358
17 Si 0.751 3.249
18 H -0.191 1.191
19 H -0.198 1.198
20 H -0.183 1.183
21 N -0.213 5.213
22 C -0.044 4.044
23 C 0.092 3.908
24 S -0.589 6.589
25 H 0.091 0.909
26 H 0.081 0.919
27 H 0.084 0.916
28 H 0.123 0.877
29 H 0.111 0.889
30 H 0.122 0.878
31 H 0.107 0.893
32 H 0.108 0.892
33 H 0.076 0.924
34 H 0.095 0.905
35 H 0.127 0.873
36 H 0.097 0.903
37 H 0.086 0.914
38 H 0.103 0.897
39 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -0.042 1.189 -6.662 6.767
hybrid contribution -0.611 -0.928 2.064 2.344
sum -0.653 0.261 -4.598 4.652
Atomic orbital electron populations
1.22047 0.93506 1.03422 1.02317 1.21688 0.95776 0.95773 0.88810
0.92288 1.23531 0.92878 1.04851 1.00063 1.86681 1.08463 1.87269
1.23407 1.23519 1.02798 1.03020 0.92177 1.22296 0.86182 0.98915
0.99508 1.61282 1.03835 1.60045 1.02956 1.21835 0.96091 0.93344
0.77166 1.49176 1.33140 1.14173 1.19496 1.79479 1.29374 0.90771
1.16252 1.21380 0.86771 0.88367 0.91325 1.18359 1.20406 0.95571
1.13586 0.88441 1.25839 0.94143 1.00017 0.95067 1.69887 1.15345
1.32968 1.17565 0.85951 0.79966 0.79207 0.79748 1.19135 1.19752
1.18255 1.46006 1.39485 1.12614 1.23213 1.21779 0.93707 1.03616
0.85270 1.22968 0.89403 0.92765 0.85614 1.92836 1.67671 1.06632
1.91791 0.90872 0.91933 0.91569 0.87656 0.88930 0.87817 0.89258
0.89177 0.92405 0.90469 0.87334 0.90309 0.91357 0.89703 0.89192
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.74 8.01 37.16 0.30 -1.45 16
2 C 0.09 1.22 2.50 -67.79 -0.17 1.05 16
3 H 0.06 0.82 7.91 -51.93 -0.41 0.41 16
4 C -0.06 -0.82 5.96 37.29 0.22 -0.60 16
5 S -0.29 -4.17 22.40 -107.50 -2.41 -6.57 16
6 C -0.07 -1.06 6.68 37.28 0.25 -0.81 16
7 C 0.06 1.08 4.84 -3.93 -0.02 1.06 16
8 N -0.55 -9.41 4.50 -230.88 -1.04 -10.45 16
9 C 0.33 6.06 5.22 -63.31 -0.33 5.73 16
10 N -0.37 -8.32 3.18 -65.05 -0.21 -8.52 16
11 N -0.33 -8.11 10.79 31.21 0.34 -7.77 16
12 C 0.37 8.86 7.50 -155.28 -1.16 7.69 16
13 C -0.44 -9.94 8.99 -38.20 -0.34 -10.28 16
14 H 0.10 1.99 7.08 -52.49 -0.37 1.62 16
15 C 0.08 1.68 5.49 -17.31 -0.10 1.59 16
16 N -0.73 -17.37 11.92 55.55 0.66 -16.71 16
17 Si 0.93 16.28 29.56 -169.99 -5.03 11.25 16
18 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16
19 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16
20 H -0.26 -4.40 7.11 56.52 0.40 -4.00 16
21 N -0.51 -11.21 3.17 -124.66 -0.39 -11.60 16
22 C 0.10 1.71 10.66 59.85 0.64 2.35 16
23 C 0.46 10.49 6.24 -86.94 -0.54 9.95 16
24 S -0.71 -16.67 28.36 -107.50 -3.05 -19.71 16
25 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16
26 H 0.06 0.70 6.78 -51.93 -0.35 0.35 16
27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16
29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16
30 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16
31 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16
32 H 0.09 1.91 4.98 -51.93 -0.26 1.66 16
33 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16
34 H 0.08 1.44 7.45 -51.93 -0.39 1.06 16
35 H 0.11 1.90 6.22 -51.93 -0.32 1.58 16
36 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16
37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
38 H 0.08 1.28 7.27 -51.93 -0.38 0.91 16
39 H 0.09 1.53 7.61 -51.93 -0.40 1.13 16
LS Contribution 335.73 15.07 5.06 5.06
Total: -1.00 -28.52 335.73 -12.70 -41.21
By element:
Atomic # 1 Polarization: 12.92 SS G_CDS: -5.38 Total: 7.54 kcal
Atomic # 6 Polarization: 17.54 SS G_CDS: -1.26 Total: 16.28 kcal
Atomic # 7 Polarization: -54.42 SS G_CDS: -0.64 Total: -55.06 kcal
Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal
Atomic # 16 Polarization: -20.83 SS G_CDS: -5.46 Total: -26.29 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -28.52 -12.70 -41.21 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000794634813.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 132.829 kcal
(2) G-P(sol) polarization free energy of solvation -28.516 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.313 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.695 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal
(6) G-S(sol) free energy of system = (1) + (5) 91.618 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds