Wall clock time and date at job start Tue Mar 31 2020 10:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.41363 * 2 1 4 4 C 1.53255 * 109.40805 * 240.15428 * 2 1 3 5 5 S 1.81901 * 108.50602 * 177.95755 * 4 2 1 6 6 C 1.81898 * 101.91219 * 51.30831 * 5 4 2 7 7 C 1.53243 * 108.50821 * 308.69130 * 6 5 4 8 8 N 1.46471 * 109.79355 * 62.04663 * 7 6 5 9 9 C 1.46901 * 111.00071 * 162.19845 * 8 7 6 10 10 N 1.46505 * 109.47003 * 304.71708 * 9 8 7 11 11 N 1.40155 * 126.14617 * 276.23087 * 10 9 8 12 12 C 1.32238 * 107.75858 * 179.88084 * 11 10 9 13 13 C 1.40126 * 125.92717 * 180.12748 * 12 11 10 14 14 H 1.08000 * 119.99699 * 174.76458 * 13 12 11 15 15 C 1.40036 * 120.00146 * 354.77985 * 13 12 11 16 16 N 1.30806 * 119.99799 * 5.82536 * 15 13 12 17 17 Si 1.86794 * 120.00306 * 185.82978 * 15 13 12 18 18 H 1.48500 * 109.47465 * 94.97663 * 17 15 13 19 19 H 1.48497 * 109.47418 * 214.98124 * 17 15 13 20 20 H 1.48503 * 109.46864 * 334.98038 * 17 15 13 21 21 N 1.38496 * 108.14652 * 0.37838 * 12 11 10 22 22 C 1.46501 * 125.83694 * 179.72214 * 21 12 11 23 23 C 1.34723 * 108.32835 * 359.75567 * 21 12 11 24 24 S 1.71203 * 125.97228 * 179.97438 * 23 21 12 25 25 H 1.09003 * 109.47202 * 186.86376 * 1 2 3 26 26 H 1.09000 * 109.47237 * 306.86979 * 1 2 3 27 27 H 1.09003 * 109.46997 * 66.86711 * 1 2 3 28 28 H 1.09004 * 109.62689 * 58.25302 * 4 2 1 29 29 H 1.08995 * 109.63135 * 297.66599 * 4 2 1 30 30 H 1.09007 * 109.63296 * 188.98808 * 6 5 4 31 31 H 1.09000 * 109.63547 * 68.39772 * 6 5 4 32 32 H 1.08996 * 109.41136 * 182.12115 * 7 6 5 33 33 H 1.09000 * 109.40870 * 301.97104 * 7 6 5 34 34 H 1.08997 * 109.47601 * 64.72004 * 9 8 7 35 35 H 1.09000 * 109.46989 * 184.72092 * 9 8 7 36 36 H 0.96998 * 119.99471 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47039 * 270.01592 * 22 21 12 38 38 H 1.09003 * 109.46916 * 30.01193 * 22 21 12 39 39 H 1.08994 * 109.47189 * 150.01185 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0280 0.0000 4 6 2.0392 -0.7194 -1.2538 5 16 3.8570 -0.6520 -1.2598 6 6 4.2611 -1.2695 0.4027 7 6 3.4461 -0.4745 1.4284 8 7 2.0155 -0.6887 1.1986 9 6 1.2295 -0.3055 2.3791 10 7 1.7229 -1.0327 3.5513 11 7 1.3605 -2.3323 3.9307 12 6 2.0212 -2.6284 5.0373 13 6 1.9443 -3.8369 5.7424 14 1 2.5906 -4.0094 6.5904 15 6 1.0297 -4.8211 5.3475 16 7 0.3283 -4.6613 4.2550 17 14 0.8113 -6.3618 6.3807 18 1 -0.3307 -6.1759 7.3115 19 1 0.5417 -7.5201 5.4915 20 1 2.0495 -6.6143 7.1608 21 7 2.7980 -1.5347 5.3816 22 6 3.6809 -1.4425 6.5471 23 6 2.6025 -0.5698 4.4619 24 16 3.3413 0.9745 4.4520 25 1 -0.3634 -1.0203 0.1228 26 1 -0.3634 0.6166 0.8221 27 1 -0.3633 0.4037 -0.9451 28 1 1.6514 -0.2233 -2.1435 29 1 1.7113 -1.7587 -1.2382 30 1 5.3253 -1.1330 0.5954 31 1 4.0062 -2.3270 0.4726 32 1 3.7052 -0.8073 2.4334 33 1 3.6741 0.5867 1.3282 34 1 1.3279 0.7667 2.5487 35 1 0.1809 -0.5524 2.2132 36 1 -0.3054 -5.3429 3.9817 37 1 3.1232 -1.0442 7.3947 38 1 4.0598 -2.4340 6.7951 39 1 4.5164 -0.7809 6.3185 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794634813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:52 Heat of formation + Delta-G solvation = 76.664490 kcal Electronic energy + Delta-G solvation = -22794.471232 eV Core-core repulsion = 19604.729459 eV Total energy + Delta-G solvation = -3189.741773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.75369 -39.88993 -36.22247 -35.64661 -33.92183 -32.83379 -31.39895 -28.79909 -28.35184 -28.29368 -25.90445 -23.94987 -23.28816 -22.66206 -21.26511 -19.55074 -18.46710 -18.09747 -17.52606 -17.43636 -16.87487 -16.61693 -16.40661 -15.91350 -15.39668 -15.17465 -14.73984 -14.62352 -14.02696 -13.88546 -13.72950 -13.46986 -13.44126 -13.33160 -13.21857 -13.04619 -12.82192 -12.69287 -12.48982 -12.24972 -11.99215 -11.92713 -11.64151 -11.39758 -11.00726 -10.75585 -10.66532 -9.64636 -8.84368 -8.78062 -8.68240 -8.59039 -6.97761 0.45167 0.71458 0.73844 1.27375 1.43346 1.44754 1.58400 1.60414 1.84828 2.10952 2.36515 2.59194 3.07572 3.51940 3.65700 3.70088 3.97411 4.02674 4.04569 4.05624 4.15396 4.25757 4.43015 4.43775 4.51284 4.63905 4.66719 4.68266 4.77073 4.80072 4.85595 4.95366 5.08999 5.20264 5.24141 5.58075 5.68360 5.90497 6.10289 6.45573 6.56151 7.30205 8.23747 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.005026 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.995956 B = 5569.394251 C = 6521.657066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.088 3.912 3 H 0.060 0.940 4 C -0.057 4.057 5 S -0.284 6.284 6 C -0.063 4.063 7 C 0.074 3.926 8 N -0.559 5.559 9 C 0.326 3.674 10 N -0.372 5.372 11 N -0.359 5.359 12 C 0.350 3.650 13 C -0.451 4.451 14 H 0.118 0.882 15 C 0.036 3.964 16 N -0.772 5.772 17 Si 1.004 2.996 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.246 1.246 21 N -0.514 5.514 22 C 0.094 3.906 23 C 0.455 3.545 24 S -0.737 6.737 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.139 0.861 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.292 0.708 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 -0.020 -4.967 5.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 H 0.078 0.922 4 C -0.206 4.206 5 S -0.056 6.056 6 C -0.212 4.212 7 C -0.056 4.056 8 N -0.287 5.287 9 C 0.116 3.884 10 N -0.158 5.158 11 N -0.191 5.191 12 C 0.102 3.898 13 C -0.493 4.493 14 H 0.136 0.864 15 C -0.187 4.187 16 N -0.397 5.397 17 Si 0.823 3.177 18 H -0.188 1.188 19 H -0.197 1.197 20 H -0.169 1.169 21 N -0.215 5.215 22 C -0.047 4.047 23 C 0.084 3.916 24 S -0.614 6.614 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.157 0.843 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.496 0.343 -6.826 6.853 hybrid contribution -0.493 -0.647 2.059 2.213 sum -0.989 -0.304 -4.768 4.879 Atomic orbital electron populations 1.22016 0.91522 1.02977 1.04123 1.21857 0.97343 0.95471 0.87510 0.92247 1.23633 0.91205 1.04908 1.00823 1.86667 1.10414 1.86990 1.21559 1.23377 1.03015 1.01786 0.93019 1.22050 0.87132 0.98239 0.98202 1.61340 1.03197 1.60762 1.03421 1.21975 0.96712 0.92719 0.77025 1.49449 1.32665 1.13598 1.20048 1.79383 1.30565 0.91923 1.17266 1.21744 0.87229 0.89235 0.91571 1.18901 1.20950 0.95385 1.14036 0.86408 1.26860 0.93144 1.02869 0.95839 1.69980 1.16030 1.34366 1.19294 0.84824 0.80246 0.74721 0.77862 1.18835 1.19694 1.16908 1.46275 1.39533 1.11781 1.23873 1.22052 0.93282 1.05106 0.84284 1.22932 0.89732 0.92740 0.86202 1.92750 1.68668 1.07678 1.92299 0.91973 0.91973 0.88368 0.84344 0.89403 0.87066 0.90668 0.92731 0.93479 0.90854 0.86464 0.89759 0.89911 0.87512 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.01 71.98 0.58 -2.50 16 2 C 0.09 2.27 2.50 45.07 0.11 2.38 16 3 H 0.06 1.57 7.91 -2.39 -0.02 1.56 16 4 C -0.06 -1.34 5.96 72.07 0.43 -0.91 16 5 S -0.28 -7.95 22.40 -56.49 -1.27 -9.22 16 6 C -0.06 -2.03 6.68 72.06 0.48 -1.55 16 7 C 0.07 2.69 4.84 86.47 0.42 3.11 16 8 N -0.56 -19.17 4.50 -884.38 -3.98 -23.14 16 9 C 0.33 12.31 5.22 170.80 0.89 13.20 16 10 N -0.37 -16.92 3.18 -359.72 -1.15 -18.06 16 11 N -0.36 -18.13 10.79 -55.17 -0.60 -18.73 16 12 C 0.35 16.88 7.50 133.53 1.00 17.88 16 13 C -0.45 -20.18 8.99 23.16 0.21 -19.97 16 14 H 0.12 4.60 7.08 -2.91 -0.02 4.57 16 15 C 0.04 1.57 5.49 85.28 0.47 2.04 16 16 N -0.77 -36.63 11.92 21.84 0.26 -36.37 16 17 Si 1.00 32.04 29.56 68.60 2.03 34.07 16 18 H -0.26 -8.26 7.11 99.48 0.71 -7.55 16 19 H -0.27 -8.59 7.11 99.48 0.71 -7.88 16 20 H -0.25 -7.29 7.11 99.48 0.71 -6.58 16 21 N -0.51 -22.64 3.17 -548.31 -1.74 -24.38 16 22 C 0.09 3.18 10.66 127.77 1.36 4.54 16 23 C 0.45 21.08 6.24 179.06 1.12 22.19 16 24 S -0.74 -35.04 28.36 -56.49 -1.60 -36.64 16 25 H 0.06 1.46 8.07 -2.39 -0.02 1.44 16 26 H 0.06 1.31 6.78 -2.39 -0.02 1.29 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.05 2.40 4.98 -2.39 -0.01 2.39 16 33 H 0.05 1.80 7.91 -2.39 -0.02 1.78 16 34 H 0.07 2.80 7.45 -2.39 -0.02 2.79 16 35 H 0.12 4.16 6.22 -2.39 -0.01 4.14 16 36 H 0.29 12.52 8.29 -92.71 -0.77 11.75 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.11 3.08 7.27 -2.39 -0.02 3.06 16 39 H 0.09 3.02 7.61 -2.39 -0.02 3.00 16 Total: -1.00 -62.02 335.73 0.10 -61.92 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 1.06 Total: 30.14 kcal Atomic # 6 Polarization: 33.34 SS G_CDS: 7.07 Total: 40.41 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -7.19 Total: -120.68 kcal Atomic # 14 Polarization: 32.04 SS G_CDS: 2.03 Total: 34.07 kcal Atomic # 16 Polarization: -42.99 SS G_CDS: -2.87 Total: -45.86 kcal Total: -62.02 0.10 -61.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794634813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.583 kcal (2) G-P(sol) polarization free energy of solvation -62.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds