Wall clock time and date at job start Tue Mar 31 2020 10:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.34355 * 2 1 4 4 C 1.53251 * 109.40340 * 119.80458 * 2 1 3 5 5 S 1.81895 * 108.50686 * 182.12001 * 4 2 1 6 6 C 1.81896 * 101.91371 * 308.69336 * 5 4 2 7 7 C 1.53247 * 108.50642 * 51.30616 * 6 5 4 8 8 N 1.46468 * 109.40635 * 240.19225 * 2 1 3 9 9 C 1.46903 * 110.99806 * 42.12285 * 8 2 1 10 10 N 1.46499 * 109.47495 * 190.57250 * 9 8 2 11 11 N 1.40159 * 126.14617 * 89.96854 * 10 9 8 12 12 C 1.32238 * 107.76045 * 180.02562 * 11 10 9 13 13 C 1.40119 * 125.92699 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99862 * 179.97438 * 13 12 11 15 15 C 1.40041 * 120.00003 * 359.95988 * 13 12 11 16 16 N 1.30794 * 120.00097 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99886 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47079 * 60.00056 * 17 15 13 19 19 H 1.48502 * 109.47100 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47018 * 299.99952 * 17 15 13 21 21 N 1.38492 * 108.14547 * 0.02562 * 12 11 10 22 22 C 1.46507 * 125.83513 * 179.97438 * 21 12 11 23 23 C 1.34729 * 108.33372 * 0.22658 * 21 12 11 24 24 S 1.71196 * 125.97573 * 179.75042 * 23 21 12 25 25 H 1.08990 * 109.47425 * 172.12239 * 1 2 3 26 26 H 1.09001 * 109.46952 * 292.13091 * 1 2 3 27 27 H 1.09001 * 109.46401 * 52.12205 * 1 2 3 28 28 H 1.08998 * 109.63465 * 62.41453 * 4 2 1 29 29 H 1.09010 * 109.79151 * 301.91996 * 4 2 1 30 30 H 1.08999 * 109.63432 * 291.59952 * 6 5 4 31 31 H 1.09003 * 109.62908 * 171.01091 * 6 5 4 32 32 H 1.09001 * 109.40564 * 177.88272 * 7 6 5 33 33 H 1.09000 * 109.41154 * 58.11341 * 7 6 5 34 34 H 1.09005 * 109.47264 * 70.56844 * 9 8 2 35 35 H 1.09003 * 109.47156 * 310.57078 * 9 8 2 36 36 H 0.96995 * 120.00018 * 179.97438 * 16 15 13 37 37 H 1.08992 * 109.47031 * 89.99969 * 22 21 12 38 38 H 1.08998 * 109.46829 * 210.00147 * 22 21 12 39 39 H 1.09001 * 109.46943 * 329.99748 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8911 1.0284 0.0000 4 6 2.0392 -0.7185 1.2543 5 16 3.8568 -0.6491 1.2616 6 6 4.2628 -1.2666 -0.4004 7 6 3.4476 -0.4727 -1.4269 8 7 2.0167 -0.6867 -1.1987 9 6 1.2322 -0.3034 -2.3800 10 7 1.5725 -1.1849 -3.4995 11 7 0.9447 -2.3969 -3.8179 12 6 1.5388 -2.8890 -4.8920 13 6 1.2108 -4.0897 -5.5355 14 1 1.7617 -4.4013 -6.4106 15 6 0.1690 -4.8858 -5.0437 16 7 -0.4976 -4.5089 -3.9834 17 14 -0.2677 -6.4869 -5.9012 18 1 0.9103 -7.3911 -5.8911 19 1 -1.3968 -7.1378 -5.1893 20 1 -0.6633 -6.2049 -7.3044 21 7 2.5413 -2.0117 -5.2704 22 6 3.4423 -2.1803 -6.4133 23 6 2.5502 -0.9794 -4.4047 24 16 3.6142 0.3610 -4.4488 25 1 -0.3634 -1.0179 -0.1408 26 1 -0.3633 0.3872 0.9520 27 1 -0.3632 0.6310 -0.8112 28 1 1.7125 -1.7582 1.2388 29 1 1.6503 -0.2256 2.1454 30 1 4.0091 -2.3244 -0.4703 31 1 5.3270 -1.1290 -0.5923 32 1 3.7078 -0.8056 -2.4317 33 1 3.6754 0.5886 -1.3278 34 1 1.4595 0.7285 -2.6480 35 1 0.1694 -0.3948 -2.1558 36 1 -1.2195 -5.0601 -3.6430 37 1 2.9995 -1.7193 -7.2961 38 1 4.3983 -1.7041 -6.1956 39 1 3.5995 -3.2429 -6.5984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794634815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:56 Heat of formation + Delta-G solvation = 92.418747 kcal Electronic energy + Delta-G solvation = -22790.575576 eV Core-core repulsion = 19601.516958 eV Total energy + Delta-G solvation = -3189.058617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.02243 -38.54913 -34.61069 -33.98447 -32.65614 -31.22495 -29.85840 -27.34075 -27.22185 -26.65577 -24.38953 -22.53311 -21.69658 -20.93937 -20.00875 -17.86565 -16.86873 -16.71202 -16.06660 -15.87735 -15.41833 -15.11983 -14.76175 -14.51755 -14.08662 -13.82784 -13.38085 -13.21930 -12.65304 -12.62364 -12.27861 -12.17030 -12.12975 -11.93263 -11.87593 -11.60610 -11.51267 -11.15966 -11.05002 -10.73677 -10.65379 -10.56243 -10.06793 -9.65207 -9.60572 -9.25580 -8.91751 -8.25372 -7.58118 -7.10121 -6.89668 -6.71932 -5.20218 1.92933 2.19062 2.44418 2.64568 2.76200 2.87668 2.89945 3.22763 3.47187 3.60016 3.88478 4.10238 4.71335 4.79167 4.99699 5.06932 5.18924 5.25821 5.40465 5.42792 5.46445 5.51213 5.64946 5.71242 5.78157 5.79340 5.94611 6.02141 6.11204 6.17310 6.25755 6.36522 6.46981 6.74737 6.91898 7.03758 7.16422 7.50085 7.70569 8.16236 8.29155 9.06836 9.88039 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.005013 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.635914 B = 5584.039540 C = 6583.883395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.091 3.909 3 H 0.058 0.942 4 C -0.064 4.064 5 S -0.290 6.290 6 C -0.065 4.065 7 C 0.049 3.951 8 N -0.556 5.556 9 C 0.324 3.676 10 N -0.369 5.369 11 N -0.329 5.329 12 C 0.371 3.629 13 C -0.437 4.437 14 H 0.097 0.903 15 C 0.076 3.924 16 N -0.735 5.735 17 Si 0.928 3.072 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.262 1.262 21 N -0.512 5.512 22 C 0.099 3.901 23 C 0.459 3.541 24 S -0.711 6.711 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.286 0.714 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.096 1.151 4.546 4.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.020 4.020 3 H 0.076 0.924 4 C -0.213 4.213 5 S -0.063 6.063 6 C -0.214 4.214 7 C -0.081 4.081 8 N -0.284 5.284 9 C 0.113 3.887 10 N -0.155 5.155 11 N -0.160 5.160 12 C 0.123 3.877 13 C -0.479 4.479 14 H 0.115 0.885 15 C -0.151 4.151 16 N -0.359 5.359 17 Si 0.751 3.249 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.186 1.186 21 N -0.213 5.213 22 C -0.044 4.044 23 C 0.089 3.911 24 S -0.586 6.586 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.211 1.632 6.357 6.566 hybrid contribution -0.802 -0.990 -1.896 2.284 sum -0.591 0.643 4.460 4.545 Atomic orbital electron populations 1.22065 0.93549 1.03561 1.02172 1.21648 0.95711 0.95700 0.88900 0.92431 1.23515 0.92871 1.04846 1.00038 1.86664 1.08462 1.87286 1.23853 1.23550 1.02943 1.02894 0.92002 1.22736 0.85621 0.98885 1.00830 1.61098 1.04065 1.60340 1.02886 1.21827 0.98176 0.89766 0.78948 1.49240 1.24877 1.19854 1.21489 1.79454 1.22443 0.95309 1.18842 1.21345 0.83852 0.91637 0.90908 1.18320 1.16515 1.00445 1.12578 0.88499 1.25833 0.94688 0.99928 0.94601 1.69858 1.14137 1.35630 1.16271 0.86016 0.79088 0.79803 0.79957 1.18616 1.19865 1.18612 1.45986 1.31131 1.18431 1.25725 1.21783 0.93636 1.03085 0.85912 1.22978 0.90555 0.91418 0.86118 1.92816 1.48560 1.26333 1.90908 0.90720 0.91613 0.91946 0.89020 0.87719 0.89538 0.87788 0.87031 0.92764 0.90731 0.86925 0.90237 0.91404 0.89153 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 7.99 37.16 0.30 -1.51 16 2 C 0.09 1.24 2.49 -67.82 -0.17 1.07 16 3 H 0.06 0.80 7.91 -51.93 -0.41 0.38 16 4 C -0.06 -0.83 5.96 37.29 0.22 -0.61 16 5 S -0.29 -4.28 22.40 -107.50 -2.41 -6.69 16 6 C -0.07 -1.05 6.69 37.29 0.25 -0.80 16 7 C 0.05 0.87 4.71 -3.93 -0.02 0.85 16 8 N -0.56 -9.53 4.46 -230.91 -1.03 -10.56 16 9 C 0.32 6.01 5.42 -63.31 -0.34 5.67 16 10 N -0.37 -8.23 3.58 -65.05 -0.23 -8.46 16 11 N -0.33 -8.16 10.77 31.21 0.34 -7.82 16 12 C 0.37 8.89 7.50 -155.28 -1.16 7.73 16 13 C -0.44 -9.92 8.98 -38.20 -0.34 -10.26 16 14 H 0.10 1.96 7.11 -52.49 -0.37 1.59 16 15 C 0.08 1.68 5.50 -17.32 -0.10 1.59 16 16 N -0.73 -17.37 11.90 55.55 0.66 -16.71 16 17 Si 0.93 16.25 29.56 -169.99 -5.03 11.22 16 18 H -0.26 -4.53 7.11 56.52 0.40 -4.12 16 19 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 20 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 21 N -0.51 -11.21 3.17 -124.66 -0.39 -11.60 16 22 C 0.10 1.70 10.65 59.85 0.64 2.34 16 23 C 0.46 10.43 6.58 -86.93 -0.57 9.85 16 24 S -0.71 -16.41 27.07 -107.50 -2.91 -19.33 16 25 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.06 0.71 6.67 -51.93 -0.35 0.36 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 32 H 0.11 2.35 4.02 -48.58 -0.20 2.16 16 33 H 0.05 1.00 7.91 -51.93 -0.41 0.58 16 34 H 0.08 1.39 7.65 -51.93 -0.40 0.99 16 35 H 0.11 1.96 5.64 -51.93 -0.29 1.67 16 36 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.53 7.60 -51.93 -0.39 1.13 16 39 H 0.08 1.28 7.32 -51.93 -0.38 0.90 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -28.28 333.74 -12.56 -40.85 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.29 Total: 8.15 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: -1.30 Total: 15.93 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.66 Total: -55.16 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -5.03 Total: 11.22 kcal Atomic # 16 Polarization: -20.70 SS G_CDS: -5.32 Total: -26.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.28 -12.56 -40.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794634815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.265 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds