Wall clock time and date at job start Tue Mar 31 2020 10:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 111.00089 * 2 1 4 4 N 1.46512 * 109.46867 * 66.05031 * 3 2 1 5 5 N 1.40157 * 126.14809 * 90.02529 * 4 3 2 6 6 C 1.32237 * 107.76110 * 180.02562 * 5 4 3 7 7 C 1.40119 * 125.92818 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99753 * 180.02562 * 7 6 5 9 9 C 1.40037 * 120.00086 * 0.02562 * 7 6 5 10 10 N 1.30804 * 119.99648 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00322 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47339 * 180.02562 * 11 9 7 13 13 H 1.48493 * 109.47239 * 300.00700 * 11 9 7 14 14 H 1.48504 * 109.46636 * 60.00259 * 11 9 7 15 15 N 1.38506 * 108.14514 * 0.23846 * 6 5 4 16 16 C 1.46500 * 125.83576 * 179.72691 * 15 6 5 17 17 C 1.34729 * 108.32558 * 359.59912 * 15 6 5 18 18 S 1.71201 * 125.96902 * 180.17090 * 17 15 6 19 19 C 1.46900 * 111.00003 * 236.04803 * 2 1 3 20 20 H 1.09007 * 108.84820 * 66.83325 * 19 2 1 21 21 C 1.52940 * 108.88816 * 308.39012 * 19 2 1 22 22 C 1.55158 * 108.95941 * 209.10117 * 21 19 2 23 23 S 1.83987 * 100.90619 * 41.44089 * 22 21 19 24 24 C 1.53704 * 108.89245 * 185.40683 * 19 2 1 25 25 H 1.08994 * 109.46906 * 59.99603 * 1 2 3 26 26 H 1.08993 * 109.46678 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46873 * 299.99461 * 1 2 3 28 28 H 1.09002 * 109.47645 * 306.04825 * 3 2 1 29 29 H 1.09002 * 109.47538 * 186.04157 * 3 2 1 30 30 H 0.97005 * 119.99669 * 179.97438 * 10 9 7 31 31 H 1.09003 * 109.46933 * 89.99784 * 16 15 6 32 32 H 1.08989 * 109.47019 * 209.99982 * 16 15 6 33 33 H 1.09002 * 109.46816 * 330.00669 * 16 15 6 34 34 H 1.08992 * 109.60299 * 329.03543 * 21 19 2 35 35 H 1.09007 * 109.60366 * 89.17513 * 21 19 2 36 36 H 1.08994 * 111.13466 * 283.52711 * 22 21 19 37 37 H 1.09002 * 111.16504 * 159.36708 * 22 21 19 38 38 H 1.09003 * 110.34801 * 242.50070 * 24 19 2 39 39 H 1.09010 * 110.33841 * 4.74819 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 7 1.6470 2.0282 1.2624 5 7 2.4162 2.0286 2.4341 6 6 1.7615 2.7272 3.3462 7 6 2.1880 2.9694 4.6587 8 1 1.5740 3.5554 5.3266 9 6 3.4104 2.4516 5.1046 10 7 4.1542 1.7423 4.2956 11 14 3.9787 2.7739 6.8546 12 1 5.2947 2.1227 7.0755 13 1 4.1083 4.2372 7.0714 14 1 2.9847 2.2185 7.8079 15 7 0.5782 3.1728 2.7809 16 6 -0.4435 3.9791 3.4535 17 6 0.5286 2.7404 1.5058 18 16 -0.7366 3.0381 0.3915 19 6 1.9955 -0.7659 -1.1376 20 1 1.7428 -0.2441 -2.0607 21 6 1.3340 -2.1448 -1.1547 22 6 2.3135 -3.1660 -1.7911 23 16 3.9046 -2.6435 -1.0291 24 6 3.5254 -0.8493 -1.0161 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.5612 1.9274 -0.8309 29 1 3.0798 1.3444 -0.1082 30 1 5.0011 1.3840 4.6043 31 1 -0.2248 5.0371 3.3088 32 1 -1.4224 3.7495 3.0330 33 1 -0.4430 3.7505 4.5193 34 1 1.0986 -2.4501 -0.1352 35 1 0.4167 -2.1031 -1.7421 36 1 2.3432 -3.0590 -2.8753 37 1 2.0579 -4.1866 -1.5063 38 1 4.0005 -0.3555 -1.8638 39 1 3.8563 -0.3989 -0.0802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794635644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:20 Heat of formation + Delta-G solvation = 94.588255 kcal Electronic energy + Delta-G solvation = -22446.791828 eV Core-core repulsion = 19257.827287 eV Total energy + Delta-G solvation = -3188.964541 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95959 -38.54181 -34.91642 -33.99723 -32.95340 -30.61734 -29.70022 -28.19252 -26.61332 -25.71715 -24.74897 -23.15429 -21.37413 -20.93891 -19.84669 -17.83880 -17.05644 -16.52291 -16.37803 -15.81751 -15.67219 -14.93347 -14.78628 -14.74884 -14.12341 -13.91684 -13.39632 -13.27005 -12.64878 -12.50193 -12.27335 -12.16400 -11.93486 -11.84212 -11.63391 -11.51677 -11.46266 -11.21370 -11.12791 -10.96949 -10.69838 -10.57724 -10.08654 -9.93401 -9.58443 -9.26746 -8.90533 -8.22642 -7.64889 -7.06082 -6.85426 -6.70574 -5.16416 1.83970 2.23097 2.32409 2.49041 2.79386 2.90553 2.93232 3.25973 3.51013 3.63387 3.92111 4.15703 4.46927 4.72162 4.82793 4.92085 5.00258 5.07913 5.19640 5.35720 5.45051 5.48388 5.50475 5.65522 5.79810 5.80862 5.85865 5.97542 6.02793 6.06684 6.22173 6.46740 6.52233 6.78450 6.95618 7.04583 7.12004 7.52671 7.73328 8.20174 8.32913 9.10855 9.92124 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.004970 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.246867 B = 5632.568297 C = 7523.995007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.322 3.678 4 N -0.369 5.369 5 N -0.330 5.330 6 C 0.372 3.628 7 C -0.438 4.438 8 H 0.097 0.903 9 C 0.076 3.924 10 N -0.734 5.734 11 Si 0.928 3.072 12 H -0.274 1.274 13 H -0.262 1.262 14 H -0.262 1.262 15 N -0.513 5.513 16 C 0.100 3.900 17 C 0.465 3.535 18 S -0.716 6.716 19 C 0.090 3.910 20 H 0.052 0.948 21 C -0.120 4.120 22 C -0.068 4.068 23 S -0.288 6.288 24 C -0.070 4.070 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.287 0.713 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 -5.042 -4.810 7.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.269 5.269 3 C 0.110 3.890 4 N -0.155 5.155 5 N -0.161 5.161 6 C 0.123 3.877 7 C -0.479 4.479 8 H 0.115 0.885 9 C -0.151 4.151 10 N -0.358 5.358 11 Si 0.751 3.249 12 H -0.199 1.199 13 H -0.187 1.187 14 H -0.186 1.186 15 N -0.214 5.214 16 C -0.043 4.043 17 C 0.095 3.905 18 S -0.592 6.592 19 C -0.020 4.020 20 H 0.070 0.930 21 C -0.159 4.159 22 C -0.216 4.216 23 S -0.063 6.063 24 C -0.218 4.218 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.818 -6.428 -4.971 8.167 hybrid contribution -0.946 1.455 0.479 1.800 sum -0.128 -4.974 -4.492 6.703 Atomic orbital electron populations 1.22673 0.85346 1.00917 1.03207 1.62098 1.09560 1.13327 1.41958 1.21741 1.00074 0.85761 0.81433 1.49099 1.14408 1.39061 1.12899 1.79454 1.15018 1.32356 0.89305 1.21340 0.80183 0.90803 0.95374 1.18317 1.04857 1.32326 0.92420 0.88522 1.25833 0.95505 0.93343 1.00400 1.69863 1.09620 1.20433 1.35893 0.86016 0.78702 0.79810 0.80326 1.19856 1.18655 1.18620 1.45982 1.19969 1.46027 1.09430 1.21766 0.90737 0.94327 0.97493 1.22910 0.90929 0.88778 0.87902 1.92734 1.34728 1.83594 1.48111 1.21995 0.92532 0.95007 0.92505 0.93026 1.22481 0.98249 0.91995 1.03169 1.24280 0.93084 1.02282 1.01998 1.87839 1.27594 1.08324 1.82538 1.24170 0.96813 0.94019 1.06799 0.93833 0.92226 0.90477 0.90688 0.87834 0.90200 0.91470 0.89216 0.89703 0.88906 0.90096 0.89317 0.87627 0.89169 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 7.89 60.07 0.47 0.93 16 2 N -0.54 -9.17 4.63 -238.39 -1.10 -10.27 16 3 C 0.32 5.99 5.71 -63.31 -0.36 5.63 16 4 N -0.37 -8.36 3.58 -65.04 -0.23 -8.59 16 5 N -0.33 -8.34 10.77 31.21 0.34 -8.00 16 6 C 0.37 9.06 7.50 -155.27 -1.16 7.90 16 7 C -0.44 -10.11 8.98 -38.20 -0.34 -10.45 16 8 H 0.10 1.99 7.12 -52.49 -0.37 1.62 16 9 C 0.08 1.71 5.50 -17.32 -0.10 1.61 16 10 N -0.73 -17.74 11.90 55.55 0.66 -17.08 16 11 Si 0.93 16.56 29.56 -169.99 -5.03 11.54 16 12 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 13 H -0.26 -4.59 7.11 56.52 0.40 -4.18 16 14 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 15 N -0.51 -11.44 3.17 -124.66 -0.39 -11.83 16 16 C 0.10 1.75 10.65 59.85 0.64 2.38 16 17 C 0.46 10.71 6.61 -86.94 -0.57 10.13 16 18 S -0.72 -16.66 27.11 -107.50 -2.91 -19.58 16 19 C 0.09 1.19 2.47 -67.38 -0.17 1.02 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 C -0.12 -1.37 4.39 -25.62 -0.11 -1.48 16 22 C -0.07 -0.69 7.52 38.30 0.29 -0.40 16 23 S -0.29 -3.92 23.23 -107.50 -2.50 -6.41 16 24 C -0.07 -0.93 6.18 37.52 0.23 -0.70 16 25 H 0.04 0.76 7.82 -51.93 -0.41 0.35 16 26 H 0.06 0.89 6.25 -51.93 -0.32 0.56 16 27 H 0.08 1.61 5.69 -51.93 -0.30 1.32 16 28 H 0.08 1.38 7.63 -51.93 -0.40 0.99 16 29 H 0.10 1.82 6.23 -51.93 -0.32 1.50 16 30 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.55 7.62 -51.94 -0.40 1.15 16 33 H 0.08 1.31 7.32 -51.93 -0.38 0.93 16 34 H 0.09 1.22 7.46 -51.93 -0.39 0.83 16 35 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.12 1.88 6.72 -51.92 -0.35 1.53 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -29.36 335.48 -12.59 -41.96 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.29 Total: 6.64 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: -1.19 Total: 16.57 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.73 Total: -55.77 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.54 kcal Atomic # 16 Polarization: -20.58 SS G_CDS: -5.41 Total: -25.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.36 -12.59 -41.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794635644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.544 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds