Wall clock time and date at job start Tue Mar 31 2020 10:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 111.00089 * 2 1 4 4 N 1.46512 * 109.46867 * 66.05031 * 3 2 1 5 5 N 1.40157 * 126.14809 * 90.02529 * 4 3 2 6 6 C 1.32237 * 107.76110 * 180.02562 * 5 4 3 7 7 C 1.40119 * 125.92818 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99753 * 180.02562 * 7 6 5 9 9 C 1.40037 * 120.00086 * 0.02562 * 7 6 5 10 10 N 1.30804 * 119.99648 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00322 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47339 * 180.02562 * 11 9 7 13 13 H 1.48493 * 109.47239 * 300.00700 * 11 9 7 14 14 H 1.48504 * 109.46636 * 60.00259 * 11 9 7 15 15 N 1.38506 * 108.14514 * 0.23846 * 6 5 4 16 16 C 1.46500 * 125.83576 * 179.72691 * 15 6 5 17 17 C 1.34729 * 108.32558 * 359.59912 * 15 6 5 18 18 S 1.71201 * 125.96902 * 180.17090 * 17 15 6 19 19 C 1.46900 * 111.00003 * 236.04803 * 2 1 3 20 20 H 1.09007 * 108.84820 * 66.83325 * 19 2 1 21 21 C 1.52940 * 108.88816 * 308.39012 * 19 2 1 22 22 C 1.55158 * 108.95941 * 209.10117 * 21 19 2 23 23 S 1.83987 * 100.90619 * 41.44089 * 22 21 19 24 24 C 1.53704 * 108.89245 * 185.40683 * 19 2 1 25 25 H 1.08994 * 109.46906 * 59.99603 * 1 2 3 26 26 H 1.08993 * 109.46678 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46873 * 299.99461 * 1 2 3 28 28 H 1.09002 * 109.47645 * 306.04825 * 3 2 1 29 29 H 1.09002 * 109.47538 * 186.04157 * 3 2 1 30 30 H 0.97005 * 119.99669 * 179.97438 * 10 9 7 31 31 H 1.09003 * 109.46933 * 89.99784 * 16 15 6 32 32 H 1.08989 * 109.47019 * 209.99982 * 16 15 6 33 33 H 1.09002 * 109.46816 * 330.00669 * 16 15 6 34 34 H 1.08992 * 109.60299 * 329.03543 * 21 19 2 35 35 H 1.09007 * 109.60366 * 89.17513 * 21 19 2 36 36 H 1.08994 * 111.13466 * 283.52711 * 22 21 19 37 37 H 1.09002 * 111.16504 * 159.36708 * 22 21 19 38 38 H 1.09003 * 110.34801 * 242.50070 * 24 19 2 39 39 H 1.09010 * 110.33841 * 4.74819 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 7 1.6470 2.0282 1.2624 5 7 2.4162 2.0286 2.4341 6 6 1.7615 2.7272 3.3462 7 6 2.1880 2.9694 4.6587 8 1 1.5740 3.5554 5.3266 9 6 3.4104 2.4516 5.1046 10 7 4.1542 1.7423 4.2956 11 14 3.9787 2.7739 6.8546 12 1 5.2947 2.1227 7.0755 13 1 4.1083 4.2372 7.0714 14 1 2.9847 2.2185 7.8079 15 7 0.5782 3.1728 2.7809 16 6 -0.4435 3.9791 3.4535 17 6 0.5286 2.7404 1.5058 18 16 -0.7366 3.0381 0.3915 19 6 1.9955 -0.7659 -1.1376 20 1 1.7428 -0.2441 -2.0607 21 6 1.3340 -2.1448 -1.1547 22 6 2.3135 -3.1660 -1.7911 23 16 3.9046 -2.6435 -1.0291 24 6 3.5254 -0.8493 -1.0161 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.5612 1.9274 -0.8309 29 1 3.0798 1.3444 -0.1082 30 1 5.0011 1.3840 4.6043 31 1 -0.2248 5.0371 3.3088 32 1 -1.4224 3.7495 3.0330 33 1 -0.4430 3.7505 4.5193 34 1 1.0986 -2.4501 -0.1352 35 1 0.4167 -2.1031 -1.7421 36 1 2.3432 -3.0590 -2.8753 37 1 2.0579 -4.1866 -1.5063 38 1 4.0005 -0.3555 -1.8638 39 1 3.8563 -0.3989 -0.0802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794635644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:19 Heat of formation + Delta-G solvation = 78.548030 kcal Electronic energy + Delta-G solvation = -22447.487384 eV Core-core repulsion = 19257.827287 eV Total energy + Delta-G solvation = -3189.660097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.68232 -39.79826 -36.41332 -35.68438 -34.27555 -32.30290 -30.82327 -29.70144 -28.30931 -27.16518 -25.88688 -24.55723 -22.95499 -22.66618 -20.96463 -19.52795 -18.54393 -17.82716 -17.68237 -17.42493 -17.14308 -16.43645 -16.37424 -16.13581 -15.26597 -15.13140 -14.86927 -14.53928 -13.95319 -13.80741 -13.71350 -13.46964 -13.39505 -13.12543 -12.93593 -12.82574 -12.77944 -12.64939 -12.48191 -12.33627 -12.05413 -12.00384 -11.70101 -11.38144 -10.97547 -10.88904 -10.65812 -9.57372 -8.79118 -8.72102 -8.64871 -8.50689 -6.97342 0.49182 0.76884 0.85535 1.29805 1.35179 1.44452 1.58683 1.61801 1.86217 2.11873 2.38329 2.74259 3.09706 3.45826 3.52940 3.77945 3.90875 3.97144 4.03365 4.07065 4.21694 4.34327 4.44103 4.47589 4.55731 4.58333 4.65350 4.70354 4.74140 4.83064 4.90197 4.99402 5.08834 5.09759 5.25639 5.65748 5.74531 5.89798 6.10646 6.47508 6.56649 7.32461 8.24565 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.004970 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.246867 B = 5632.568297 C = 7523.995007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.554 5.554 3 C 0.320 3.680 4 N -0.369 5.369 5 N -0.364 5.364 6 C 0.351 3.649 7 C -0.452 4.452 8 H 0.119 0.881 9 C 0.035 3.965 10 N -0.775 5.775 11 Si 1.005 2.995 12 H -0.274 1.274 13 H -0.252 1.252 14 H -0.254 1.254 15 N -0.516 5.516 16 C 0.095 3.905 17 C 0.455 3.545 18 S -0.731 6.731 19 C 0.090 3.910 20 H 0.070 0.930 21 C -0.116 4.116 22 C -0.046 4.046 23 S -0.340 6.340 24 C -0.060 4.060 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.291 0.709 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 -5.416 -4.592 7.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.281 5.281 3 C 0.109 3.891 4 N -0.155 5.155 5 N -0.197 5.197 6 C 0.103 3.897 7 C -0.494 4.494 8 H 0.137 0.863 9 C -0.188 4.188 10 N -0.399 5.399 11 Si 0.824 3.176 12 H -0.199 1.199 13 H -0.176 1.176 14 H -0.178 1.178 15 N -0.217 5.217 16 C -0.047 4.047 17 C 0.084 3.916 18 S -0.608 6.608 19 C -0.019 4.019 20 H 0.088 0.912 21 C -0.155 4.155 22 C -0.194 4.194 23 S -0.115 6.115 24 C -0.208 4.208 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.128 0.872 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.414 -6.806 -4.776 8.325 hybrid contribution -0.828 1.533 0.375 1.782 sum -0.414 -5.273 -4.401 6.881 Atomic orbital electron populations 1.22445 0.85474 1.01687 1.01009 1.62057 1.09432 1.12382 1.44188 1.21887 1.00441 0.86698 0.80088 1.49410 1.13954 1.38938 1.13195 1.79357 1.16420 1.33449 0.90463 1.21714 0.80931 0.91129 0.95941 1.18884 1.05636 1.32509 0.92347 0.86330 1.26888 0.95037 0.92319 1.04547 1.69976 1.10235 1.21492 1.38223 0.84877 0.78066 0.80004 0.74651 1.19860 1.17608 1.17752 1.46270 1.20197 1.46066 1.09163 1.22040 0.89636 0.94593 0.98393 1.22977 0.91055 0.89262 0.88341 1.92618 1.35251 1.84278 1.48639 1.22183 0.92281 0.95747 0.91727 0.91197 1.22452 0.99369 0.90947 1.02763 1.24391 0.89426 1.02563 1.02977 1.88027 1.30894 1.09053 1.83550 1.24075 0.97134 0.93690 1.05923 0.94109 0.89874 0.94449 0.90591 0.87460 0.89818 0.90000 0.89161 0.87581 0.90764 0.87623 0.86785 0.85909 0.87207 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 7.89 127.69 1.01 2.43 16 2 N -0.55 -18.73 4.63 -908.12 -4.20 -22.93 16 3 C 0.32 12.15 5.71 170.80 0.98 13.13 16 4 N -0.37 -17.13 3.58 -359.70 -1.29 -18.42 16 5 N -0.36 -18.93 10.77 -55.16 -0.59 -19.52 16 6 C 0.35 17.33 7.50 133.52 1.00 18.33 16 7 C -0.45 -20.71 8.98 23.16 0.21 -20.50 16 8 H 0.12 4.70 7.12 -2.91 -0.02 4.68 16 9 C 0.04 1.57 5.50 85.28 0.47 2.04 16 10 N -0.77 -37.97 11.90 21.84 0.26 -37.71 16 11 Si 1.01 32.89 29.56 68.60 2.03 34.92 16 12 H -0.27 -8.88 7.11 99.48 0.71 -8.17 16 13 H -0.25 -7.82 7.11 99.48 0.71 -7.11 16 14 H -0.25 -7.93 7.11 99.48 0.71 -7.22 16 15 N -0.52 -23.13 3.17 -548.31 -1.74 -24.87 16 16 C 0.09 3.24 10.65 127.77 1.36 4.60 16 17 C 0.45 21.28 6.61 179.06 1.18 22.46 16 18 S -0.73 -34.21 27.11 -56.49 -1.53 -35.74 16 19 C 0.09 2.27 2.47 45.13 0.11 2.38 16 20 H 0.07 1.55 8.14 -2.38 -0.02 1.54 16 21 C -0.12 -2.38 4.39 31.31 0.14 -2.24 16 22 C -0.05 -0.80 7.52 72.72 0.55 -0.25 16 23 S -0.34 -9.00 23.23 -56.49 -1.31 -10.31 16 24 C -0.06 -1.59 6.18 72.22 0.45 -1.14 16 25 H 0.04 1.39 7.82 -2.39 -0.02 1.37 16 26 H 0.08 2.38 6.25 -2.39 -0.01 2.36 16 27 H 0.04 1.58 5.69 -2.39 -0.01 1.56 16 28 H 0.08 2.84 7.63 -2.39 -0.02 2.82 16 29 H 0.11 3.92 6.23 -2.39 -0.01 3.90 16 30 H 0.29 13.04 8.30 -92.70 -0.77 12.27 16 31 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.09 3.06 7.62 -2.39 -0.02 3.05 16 33 H 0.11 3.12 7.32 -2.39 -0.02 3.10 16 34 H 0.07 1.84 7.46 -2.39 -0.02 1.82 16 35 H 0.11 1.69 7.96 -2.38 -0.02 1.67 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 37 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.09 2.86 6.72 -2.38 -0.02 2.84 16 Total: -1.00 -64.85 335.48 0.14 -64.72 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 1.06 Total: 28.64 kcal Atomic # 6 Polarization: 33.78 SS G_CDS: 7.45 Total: 41.22 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -7.56 Total: -123.45 kcal Atomic # 14 Polarization: 32.89 SS G_CDS: 2.03 Total: 34.92 kcal Atomic # 16 Polarization: -43.21 SS G_CDS: -2.84 Total: -46.05 kcal Total: -64.85 0.14 -64.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794635644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.264 kcal (2) G-P(sol) polarization free energy of solvation -64.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds