Wall clock time and date at job start Tue Mar 31 2020 10:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 111.00331 * 2 1 4 4 N 1.46502 * 109.46794 * 293.95419 * 3 2 1 5 5 N 1.40162 * 126.14839 * 90.02563 * 4 3 2 6 6 C 1.32243 * 107.75919 * 179.97438 * 5 4 3 7 7 C 1.40111 * 125.92459 * 179.97438 * 6 5 4 8 8 H 1.08010 * 120.00051 * 179.97438 * 7 6 5 9 9 C 1.40037 * 120.00506 * 359.97405 * 7 6 5 10 10 N 1.30796 * 119.99730 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00382 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47348 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46910 * 120.00421 * 11 9 7 14 14 H 1.48502 * 109.47654 * 240.00039 * 11 9 7 15 15 N 1.38495 * 108.14627 * 0.02562 * 6 5 4 16 16 C 1.46502 * 125.83660 * 179.97438 * 15 6 5 17 17 C 1.34730 * 108.33294 * 359.73495 * 15 6 5 18 18 S 1.71194 * 125.97744 * 180.26540 * 17 15 6 19 19 C 1.46901 * 110.99400 * 123.95235 * 2 1 3 20 20 H 1.08996 * 108.83034 * 302.20393 * 19 2 1 21 21 C 1.52330 * 108.86922 * 60.74142 * 19 2 1 22 22 C 1.54259 * 112.59417 * 120.67594 * 21 19 2 23 23 S 1.83962 * 102.57874 * 24.51943 * 22 21 19 24 24 C 1.54267 * 108.86381 * 183.67373 * 19 2 1 25 25 H 1.08999 * 109.47234 * 290.52095 * 1 2 3 26 26 H 1.09001 * 109.47082 * 50.52124 * 1 2 3 27 27 H 1.09000 * 109.47445 * 170.51980 * 1 2 3 28 28 H 1.08997 * 109.47070 * 53.95043 * 3 2 1 29 29 H 1.08992 * 109.46995 * 173.95333 * 3 2 1 30 30 H 0.96996 * 120.00583 * 179.97438 * 10 9 7 31 31 H 1.09008 * 109.46917 * 89.99811 * 16 15 6 32 32 H 1.08997 * 109.47363 * 209.99991 * 16 15 6 33 33 H 1.09002 * 109.47270 * 330.00363 * 16 15 6 34 34 H 1.09006 * 108.86623 * 241.49052 * 21 19 2 35 35 H 1.09002 * 108.87275 * 359.97438 * 21 19 2 36 36 H 1.08991 * 110.79621 * 142.79682 * 22 21 19 37 37 H 1.09009 * 110.78272 * 266.06246 * 22 21 19 38 38 H 1.08995 * 110.78732 * 333.06706 * 24 19 2 39 39 H 1.09001 * 110.78137 * 96.52693 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 7 1.6470 2.0282 -1.2623 5 7 0.4849 2.7700 -1.5150 6 6 0.5425 3.1963 -2.7655 7 6 -0.4256 3.9743 -3.4142 8 1 -0.2800 4.2705 -4.4426 9 6 -1.5819 4.3678 -2.7293 10 7 -1.7580 4.0095 -1.4837 11 14 -2.8721 5.4056 -3.5939 12 1 -2.4378 5.6749 -4.9881 13 1 -4.1648 4.6750 -3.6110 14 1 -3.0397 6.6914 -2.8701 15 7 1.7250 2.7393 -3.3230 16 6 2.1792 2.9872 -4.6936 17 6 2.3890 2.0323 -2.3879 18 16 3.9075 1.2692 -2.5940 19 6 1.9953 -0.7660 1.1377 20 1 1.6081 -0.3353 2.0610 21 6 1.5141 -2.2070 1.0262 22 6 2.6781 -3.2159 0.9437 23 16 4.0545 -2.3069 1.7583 24 6 3.5341 -0.6570 1.1432 25 1 -0.3634 0.3602 0.9624 26 1 -0.3633 0.6534 -0.7932 27 1 -0.3634 -1.0136 -0.1693 28 1 1.5612 1.9273 0.8308 29 1 3.0797 1.3443 0.1082 30 1 -2.5587 4.2823 -1.0091 31 1 2.7695 3.9032 -4.7207 32 1 2.7911 2.1505 -5.0306 33 1 1.3149 3.0925 -5.3494 34 1 0.9040 -2.4433 1.8981 35 1 0.9004 -2.3055 0.1307 36 1 2.4394 -4.1277 1.4910 37 1 2.9210 -3.4421 -0.0946 38 1 3.9132 -0.4833 0.1362 39 1 3.8637 0.1289 1.8229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794635647.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:22 Heat of formation + Delta-G solvation = 79.714407 kcal Electronic energy + Delta-G solvation = -22456.672516 eV Core-core repulsion = 19267.062997 eV Total energy + Delta-G solvation = -3189.609519 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.64081 -39.78152 -36.36116 -35.69161 -34.20374 -32.40868 -30.78485 -29.67362 -28.27775 -27.07087 -26.04061 -24.64097 -22.94724 -22.62855 -20.78357 -19.49864 -18.50587 -18.09167 -17.49451 -17.34793 -17.03802 -16.42438 -16.30614 -16.14167 -15.30576 -15.14625 -14.77453 -14.50158 -14.19735 -13.81218 -13.70439 -13.44150 -13.40841 -13.08401 -12.94827 -12.83168 -12.71764 -12.57273 -12.42188 -12.32024 -12.02572 -11.94653 -11.71703 -11.37679 -10.94150 -10.90622 -10.66305 -9.54332 -8.81654 -8.74927 -8.62560 -8.53227 -6.97041 0.53110 0.83398 0.88625 1.26399 1.29266 1.45332 1.61473 1.65804 1.85000 2.12461 2.40615 2.79893 3.09011 3.38603 3.54886 3.86705 3.88974 3.97382 4.07027 4.14323 4.20908 4.32094 4.46014 4.47900 4.51141 4.58516 4.70990 4.72254 4.81137 4.82241 4.91712 4.96363 5.09338 5.11743 5.28618 5.66551 5.69126 5.95335 6.13071 6.48150 6.57195 7.32781 8.23477 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.004156 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.762296 B = 6735.870992 C = 7807.490098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.551 5.551 3 C 0.321 3.679 4 N -0.374 5.374 5 N -0.368 5.368 6 C 0.354 3.646 7 C -0.451 4.451 8 H 0.117 0.883 9 C 0.038 3.962 10 N -0.774 5.774 11 Si 1.004 2.996 12 H -0.246 1.246 13 H -0.268 1.268 14 H -0.269 1.269 15 N -0.518 5.518 16 C 0.095 3.905 17 C 0.466 3.534 18 S -0.733 6.733 19 C 0.096 3.904 20 H 0.068 0.932 21 C -0.116 4.116 22 C -0.049 4.049 23 S -0.323 6.323 24 C -0.063 4.063 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.291 0.709 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 -5.018 3.229 6.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.278 5.278 3 C 0.109 3.891 4 N -0.160 5.160 5 N -0.201 5.201 6 C 0.105 3.895 7 C -0.492 4.492 8 H 0.135 0.865 9 C -0.185 4.185 10 N -0.398 5.398 11 Si 0.823 3.177 12 H -0.168 1.168 13 H -0.193 1.193 14 H -0.194 1.194 15 N -0.219 5.219 16 C -0.046 4.046 17 C 0.096 3.904 18 S -0.609 6.609 19 C -0.013 4.013 20 H 0.086 0.914 21 C -0.155 4.155 22 C -0.197 4.197 23 S -0.097 6.097 24 C -0.211 4.211 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.349 -6.114 4.546 7.737 hybrid contribution -1.806 1.663 -0.821 2.589 sum -3.155 -4.451 3.725 6.606 Atomic orbital electron populations 1.22369 0.85885 1.02542 1.00757 1.62046 1.09081 1.12378 1.44321 1.21878 1.00518 0.86311 0.80371 1.49380 1.15811 1.40645 1.10151 1.79260 1.02513 1.23995 1.14349 1.21671 0.85174 0.94053 0.88566 1.18938 1.00744 1.28833 1.00675 0.86500 1.26819 1.00278 0.96220 0.95187 1.69951 1.26240 1.33205 1.10445 0.84796 0.76247 0.77148 0.79502 1.16840 1.19314 1.19410 1.46245 1.17937 1.44124 1.13569 1.22021 1.02014 1.03379 0.77191 1.22886 0.93256 0.89499 0.84786 1.92667 1.09746 1.66062 1.92460 1.22279 0.92612 0.95105 0.91351 0.91404 1.22046 0.98279 0.90406 1.04814 1.24159 0.91935 1.00453 1.03103 1.87865 1.44943 1.07705 1.69234 1.24285 0.96214 0.95884 1.04759 0.94633 0.93235 0.89661 0.91403 0.87014 0.89777 0.90066 0.89356 0.87557 0.88237 0.89734 0.85318 0.89618 0.89258 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 9.11 127.69 1.16 2.22 16 2 N -0.55 -18.16 4.64 -908.19 -4.21 -22.37 16 3 C 0.32 12.03 5.64 170.81 0.96 12.99 16 4 N -0.37 -16.99 3.34 -359.73 -1.20 -18.19 16 5 N -0.37 -18.20 9.53 -55.17 -0.53 -18.72 16 6 C 0.35 16.91 7.50 133.52 1.00 17.91 16 7 C -0.45 -19.95 8.98 23.16 0.21 -19.75 16 8 H 0.12 4.55 7.11 -2.91 -0.02 4.53 16 9 C 0.04 1.62 5.50 85.28 0.47 2.09 16 10 N -0.77 -35.75 11.90 21.84 0.26 -35.49 16 11 Si 1.00 31.53 29.56 68.60 2.03 33.55 16 12 H -0.25 -7.17 7.11 99.48 0.71 -6.46 16 13 H -0.27 -8.31 7.11 99.48 0.71 -7.60 16 14 H -0.27 -8.38 7.11 99.48 0.71 -7.67 16 15 N -0.52 -23.02 3.17 -548.30 -1.74 -24.76 16 16 C 0.10 3.27 10.64 127.77 1.36 4.63 16 17 C 0.47 22.01 7.84 179.06 1.40 23.41 16 18 S -0.73 -35.75 29.50 -56.49 -1.67 -37.41 16 19 C 0.10 2.48 2.46 45.12 0.11 2.59 16 20 H 0.07 1.59 8.11 -2.39 -0.02 1.57 16 21 C -0.12 -2.45 5.52 30.80 0.17 -2.28 16 22 C -0.05 -1.01 7.46 72.41 0.54 -0.46 16 23 S -0.32 -8.45 23.26 -56.49 -1.31 -9.77 16 24 C -0.06 -1.75 5.40 72.41 0.39 -1.36 16 25 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 26 H 0.05 2.07 6.38 -2.39 -0.02 2.05 16 27 H 0.08 2.36 6.44 -2.39 -0.02 2.35 16 28 H 0.07 2.45 8.12 -2.39 -0.02 2.43 16 29 H 0.11 4.18 5.60 -2.39 -0.01 4.17 16 30 H 0.29 12.14 8.30 -92.71 -0.77 11.37 16 31 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 32 H 0.09 3.06 7.62 -2.39 -0.02 3.04 16 33 H 0.11 3.11 7.32 -2.39 -0.02 3.09 16 34 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.08 1.92 6.17 -2.39 -0.01 1.91 16 36 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.09 3.09 7.42 -2.39 -0.02 3.07 16 39 H 0.11 2.78 8.11 -2.39 -0.02 2.76 16 Total: -1.00 -62.01 339.62 0.48 -61.53 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 1.06 Total: 29.63 kcal Atomic # 6 Polarization: 34.21 SS G_CDS: 7.78 Total: 41.99 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -7.42 Total: -119.53 kcal Atomic # 14 Polarization: 31.53 SS G_CDS: 2.03 Total: 33.55 kcal Atomic # 16 Polarization: -44.20 SS G_CDS: -2.98 Total: -47.18 kcal Total: -62.01 0.48 -61.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794635647.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.245 kcal (2) G-P(sol) polarization free energy of solvation -62.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds