Wall clock time and date at job start Tue Mar 31 2020 10:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46890 * 315.48199 * 3 2 1 5 5 C 1.36912 * 119.99846 * 266.01479 * 4 3 2 6 6 H 1.08000 * 119.99597 * 202.74056 * 5 4 3 7 7 C 1.39017 * 120.00114 * 22.73979 * 5 4 3 8 8 N 1.31377 * 120.00232 * 25.47627 * 7 5 4 9 9 Si 1.86805 * 119.99965 * 205.47636 * 7 5 4 10 10 H 1.48495 * 109.47043 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47048 * 120.00175 * 9 7 5 12 12 H 1.48500 * 109.46921 * 239.99739 * 9 7 5 13 13 C 1.34780 * 119.99928 * 86.01882 * 4 3 2 14 14 O 1.21603 * 119.99640 * 184.41423 * 13 4 3 15 15 C 1.47647 * 120.00177 * 4.40879 * 13 4 3 16 16 C 1.40647 * 126.05372 * 175.29470 * 15 13 4 17 17 N 1.31243 * 106.61955 * 179.78683 * 16 15 13 18 18 N 1.40104 * 107.19708 * 0.36492 * 17 16 15 19 19 C 1.40148 * 125.56499 * 179.88489 * 18 17 16 20 20 C 1.38869 * 120.03991 * 359.69537 * 19 18 17 21 21 C 1.38081 * 119.95432 * 180.02562 * 20 19 18 22 22 C 1.38501 * 120.04582 * 359.97438 * 21 20 19 23 23 F 1.35096 * 119.95729 * 179.97438 * 22 21 20 24 24 C 1.38503 * 120.08510 * 0.27403 * 22 21 20 25 25 C 1.38083 * 120.04260 * 359.45045 * 24 22 21 26 26 N 1.28713 * 108.87614 * 359.62079 * 18 17 16 27 27 H 4.40640 * 5.51331 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.47047 * 195.48098 * 3 2 1 29 29 H 1.09000 * 109.46761 * 75.48319 * 3 2 1 30 30 H 0.96994 * 120.00431 * 180.02562 * 8 7 5 31 31 H 1.08002 * 126.68719 * 0.02562 * 16 15 13 32 32 H 1.08000 * 120.02050 * 359.97438 * 20 19 18 33 33 H 1.08008 * 119.97575 * 179.97438 * 21 20 19 34 34 H 1.08002 * 119.97525 * 179.70096 * 24 22 21 35 35 H 1.08004 * 120.02324 * 180.29684 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.9840 0.9684 5 6 3.4405 -0.5951 2.2451 6 1 4.1222 -1.1844 2.8404 7 6 2.8734 0.5582 2.7750 8 7 1.7228 0.9954 2.3157 9 14 3.7476 1.4866 4.1402 10 1 5.0165 0.7926 4.4768 11 1 4.0440 2.8694 3.6874 12 1 2.8766 1.5353 5.3420 13 6 3.2836 -2.2726 0.6026 14 8 3.6120 -3.1045 1.4265 15 6 3.0477 -2.6742 -0.7985 16 6 3.2542 -3.9566 -1.3380 17 7 2.9220 -3.8884 -2.6059 18 7 2.5189 -2.5705 -2.8582 19 6 2.0860 -2.0731 -4.0948 20 6 2.0368 -2.9099 -5.2020 21 6 1.6105 -2.4178 -6.4197 22 6 1.2315 -1.0908 -6.5371 23 9 0.8152 -0.6112 -7.7295 24 6 1.2847 -0.2535 -5.4352 25 6 1.7051 -0.7431 -4.2145 26 7 2.6058 -1.8925 -1.7676 27 1 -1.0498 0.0000 0.0003 28 1 3.0090 0.9912 0.2743 29 1 3.0095 -0.2568 -0.9949 30 1 1.3273 1.8003 2.6851 31 1 3.6123 -4.8285 -0.8107 32 1 2.3327 -3.9446 -5.1109 33 1 1.5726 -3.0682 -7.2812 34 1 0.9934 0.7822 -5.5299 35 1 1.7419 -0.0910 -3.3543 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798801648.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:51 Heat of formation + Delta-G solvation = 128.745922 kcal Electronic energy + Delta-G solvation = -24986.372194 eV Core-core repulsion = 21097.231713 eV Total energy + Delta-G solvation = -3889.140480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.092 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -49.96763 -43.73757 -40.45897 -39.93085 -37.15612 -34.74577 -34.26511 -33.30234 -33.02017 -32.24515 -30.32382 -28.24738 -27.18706 -25.37731 -24.78966 -23.32838 -22.50686 -21.24673 -19.75996 -19.40526 -18.62205 -18.54153 -17.93553 -17.40837 -17.26070 -16.78527 -16.62443 -16.10570 -15.92840 -15.69935 -15.39086 -14.80116 -14.73288 -14.30674 -14.27417 -14.22113 -14.09058 -13.66625 -13.60306 -13.00475 -12.85476 -12.57753 -12.25731 -12.11642 -11.83304 -11.77589 -11.23714 -11.15494 -11.09323 -10.71879 -10.45414 -10.32242 -9.89159 -9.28646 -8.36686 -5.98547 -0.67427 0.04814 0.56109 0.81794 0.86047 1.42593 1.45890 1.59729 2.00684 2.29444 2.36972 2.42549 2.47131 2.61268 3.03604 3.11312 3.11513 3.62673 3.67989 3.82922 3.93192 3.97241 4.05476 4.15612 4.38364 4.52524 4.72615 4.78822 4.81709 4.89535 4.93983 4.99629 5.17260 5.40523 5.44211 5.46782 5.80263 6.00017 6.33992 6.70178 7.03659 7.20322 7.28381 7.85778 8.59067 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.019221 B = 0.003853 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.359393 B = 7266.179496 C = 8331.066452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.132 4.132 3 C 0.227 3.773 4 N -0.420 5.420 5 C -0.358 4.358 6 H 0.086 0.914 7 C 0.010 3.990 8 N -0.852 5.852 9 Si 0.987 3.013 10 H -0.268 1.268 11 H -0.264 1.264 12 H -0.279 1.279 13 C 0.506 3.494 14 O -0.611 6.611 15 C -0.042 4.042 16 C 0.077 3.923 17 N -0.282 5.282 18 N -0.172 5.172 19 C 0.124 3.876 20 C -0.080 4.080 21 C -0.120 4.120 22 C 0.097 3.903 23 F -0.135 7.135 24 C -0.124 4.124 25 C -0.090 4.090 26 N -0.212 5.212 27 H 0.226 0.774 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.276 0.724 31 H 0.237 0.763 32 H 0.158 0.842 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 -1.023 -17.933 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.133 4.133 3 C 0.104 3.896 4 N -0.136 5.136 5 C -0.485 4.485 6 H 0.103 0.897 7 C -0.196 4.196 8 N -0.486 5.486 9 Si 0.810 3.190 10 H -0.192 1.192 11 H -0.189 1.189 12 H -0.205 1.205 13 C 0.295 3.705 14 O -0.497 6.497 15 C -0.208 4.208 16 C -0.114 4.114 17 N -0.110 5.110 18 N -0.064 5.064 19 C 0.033 3.967 20 C -0.101 4.101 21 C -0.139 4.139 22 C 0.077 3.923 23 F -0.113 7.113 24 C -0.143 4.143 25 C -0.112 4.112 26 N -0.056 5.056 27 H 0.242 0.758 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.253 0.747 32 H 0.176 0.824 33 H 0.195 0.805 34 H 0.186 0.814 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.900 -0.840 -18.727 18.842 hybrid contribution 0.166 0.255 1.819 1.844 sum -1.735 -0.585 -16.908 17.007 Atomic orbital electron populations 1.24903 0.96148 1.01870 1.04315 1.23025 0.94472 0.98990 0.96828 1.18591 0.85267 0.93149 0.92561 1.43749 1.53490 1.05427 1.10896 1.19710 1.26955 1.10209 0.91645 0.89661 1.26162 0.94649 0.98142 1.00690 1.70229 1.13136 1.22493 1.42766 0.84996 0.78574 0.78170 0.77289 1.19179 1.18902 1.20470 1.17040 0.85710 0.82647 0.85139 1.90592 1.55954 1.50879 1.52255 1.23149 1.09142 0.93462 0.95016 1.25389 0.96955 0.98729 0.90288 1.77825 1.18605 0.97975 1.16554 1.48602 1.46446 1.04675 1.06643 1.17819 1.03561 0.94590 0.80716 1.20881 0.98809 1.00798 0.89595 1.21255 0.99721 0.94232 0.98726 1.17875 0.99945 0.93170 0.81277 1.91528 1.87633 1.88579 1.43586 1.21188 1.00998 1.02050 0.90052 1.20870 0.98222 0.92811 0.99249 1.74025 1.14337 1.23865 0.93413 0.75750 0.90018 0.87050 0.91391 0.74668 0.82449 0.80485 0.81363 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.66 19.17 74.32 1.42 -9.23 16 2 C -0.13 -6.01 10.52 31.13 0.33 -5.68 16 3 C 0.23 10.40 4.77 84.58 0.40 10.80 16 4 N -0.42 -21.93 2.58 -648.91 -1.67 -23.61 16 5 C -0.36 -19.82 9.15 84.09 0.77 -19.05 16 6 H 0.09 4.99 7.54 -2.91 -0.02 4.96 16 7 C 0.01 0.53 4.72 84.95 0.40 0.93 16 8 N -0.85 -43.91 9.79 21.67 0.21 -43.70 16 9 Si 0.99 40.40 29.62 68.60 2.03 42.43 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 12 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 13 C 0.51 25.87 7.59 86.73 0.66 26.53 16 14 O -0.61 -34.44 16.63 -4.04 -0.07 -34.51 16 15 C -0.04 -1.76 6.82 42.18 0.29 -1.47 16 16 C 0.08 2.63 11.91 85.37 1.02 3.65 16 17 N -0.28 -8.98 11.90 -56.29 -0.67 -9.65 16 18 N -0.17 -5.62 4.44 -51.13 -0.23 -5.85 16 19 C 0.12 3.23 6.74 38.11 0.26 3.48 16 20 C -0.08 -1.57 9.65 22.38 0.22 -1.35 16 21 C -0.12 -1.80 10.02 22.30 0.22 -1.58 16 22 C 0.10 1.64 7.30 22.40 0.16 1.80 16 23 F -0.13 -2.31 17.26 44.97 0.78 -1.54 16 24 C -0.12 -2.20 10.02 22.30 0.22 -1.98 16 25 C -0.09 -2.11 9.61 22.38 0.22 -1.89 16 26 N -0.21 -8.05 7.18 -48.62 -0.35 -8.40 16 27 H 0.23 7.60 7.80 -4.43 -0.03 7.57 16 28 H 0.08 3.83 7.05 -2.39 -0.02 3.81 16 29 H 0.11 4.61 5.06 -2.39 -0.01 4.60 16 30 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 31 H 0.24 6.62 8.06 -2.91 -0.02 6.60 16 32 H 0.16 2.84 7.67 -2.91 -0.02 2.82 16 33 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 34 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.14 3.62 7.67 -2.91 -0.02 3.60 16 Total: -1.00 -67.76 323.98 7.77 -59.98 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 1.15 Total: 19.88 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 6.59 Total: 4.96 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -2.71 Total: -91.20 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.07 Total: -34.51 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -67.76 7.77 -59.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798801648.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.730 kcal (2) G-P(sol) polarization free energy of solvation -67.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds