Wall clock time and date at job start Tue Mar 31 2020 10:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46835 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00280 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99788 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00327 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46999 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46979 * 120.00025 * 13 11 9 16 16 H 1.48496 * 109.47443 * 239.99733 * 13 11 9 17 17 C 1.39740 * 119.99664 * 269.99409 * 3 2 1 18 18 C 1.38927 * 120.05351 * 0.02562 * 17 3 2 19 19 C 1.38103 * 119.98877 * 179.97438 * 18 17 3 20 20 C 1.38351 * 120.08462 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 119.95008 * 179.97438 * 20 19 18 22 22 C 1.38582 * 120.10183 * 359.97438 * 20 19 18 23 23 F 1.35101 * 119.99429 * 179.97438 * 22 20 19 24 24 C 1.38338 * 120.01183 * 359.68008 * 22 20 19 25 25 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 26 26 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 28 28 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 29 29 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 30 30 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 31 31 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 32 32 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47487 * 300.00114 * 8 7 5 34 34 H 1.09002 * 109.47182 * 60.00342 * 8 7 5 35 35 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 36 36 H 1.08005 * 120.00421 * 0.02562 * 18 17 3 37 37 H 1.07999 * 119.95955 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.04591 * 180.32648 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 8 0.0060 2.7177 1.0213 7 7 0.9951 3.4888 2.8514 8 6 -0.2259 4.1789 3.2745 9 6 0.0253 4.8895 4.5795 10 1 0.9973 4.8331 5.0467 11 6 -0.9859 5.6118 5.1769 12 7 -2.1697 5.6801 4.6083 13 14 -0.6747 6.4920 6.7949 14 1 0.7282 6.2598 7.2229 15 1 -0.9031 7.9486 6.6178 16 1 -1.6017 5.9679 7.8299 17 6 2.2513 2.0399 -1.2102 18 6 2.0197 1.3861 -2.4140 19 6 2.2499 2.0385 -3.6092 20 6 2.7115 3.3427 -3.6098 21 17 3.0003 4.1593 -5.1144 22 6 2.9437 3.9984 -2.4112 23 9 3.3949 5.2718 -2.4142 24 6 2.7077 3.3512 -1.2115 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.0644 2.7986 1.1383 31 1 2.5506 1.3453 2.0283 32 1 1.7953 3.5402 3.3973 33 1 -0.5142 4.9057 2.5151 34 1 -1.0276 3.4520 3.4047 35 1 -2.8810 6.1885 5.0284 36 1 1.6590 0.3681 -2.4150 37 1 2.0701 1.5297 -4.5447 38 1 2.8834 3.8634 -0.2770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799342468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:41 Heat of formation + Delta-G solvation = -57.134185 kcal Electronic energy + Delta-G solvation = -23544.270213 eV Core-core repulsion = 19748.176860 eV Total energy + Delta-G solvation = -3796.093353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -48.92940 -40.08757 -38.62116 -36.86793 -35.84952 -34.19771 -32.45791 -31.93202 -30.36519 -29.99549 -27.69171 -26.14222 -23.55951 -23.05506 -22.35037 -20.92358 -19.79837 -18.22411 -17.43793 -16.78522 -16.43061 -16.04688 -15.82512 -15.66331 -15.41723 -14.80666 -14.62463 -14.09023 -13.94254 -13.69904 -13.45900 -13.25847 -12.91746 -12.67054 -12.45160 -12.34675 -12.02241 -11.87447 -11.69945 -11.63511 -11.39058 -11.04749 -10.98759 -10.92816 -10.70751 -10.35897 -9.94244 -9.43266 -9.11537 -8.94862 -8.78711 -7.95583 -7.44663 -6.21172 -4.28552 1.05725 1.16252 2.09934 2.78424 3.20293 3.21994 3.27774 3.30430 3.47340 4.01804 4.14114 4.33472 4.51474 4.74916 4.92045 5.04816 5.07456 5.15276 5.22595 5.25476 5.35369 5.37856 5.43065 5.62352 5.79831 5.83923 5.93918 6.00449 6.05969 6.48858 6.52430 6.98443 7.21381 7.25398 7.35760 7.45459 7.60907 7.91650 8.53635 8.72085 9.00727 9.38372 10.88903 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.003214 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.586042 B = 8709.730611 C = 9855.905268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 N -0.596 5.596 4 C 0.096 3.904 5 C 0.471 3.529 6 O -0.536 6.536 7 N -0.712 5.712 8 C 0.252 3.748 9 C -0.544 4.544 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.903 3.097 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.266 3.734 18 C -0.196 4.196 19 C -0.034 4.034 20 C -0.138 4.138 21 Cl -0.068 7.068 22 C 0.161 3.839 23 F -0.128 7.128 24 C -0.223 4.223 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.390 0.610 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.266 0.734 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.327 -11.506 -13.103 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.001 4.001 3 N -0.302 5.302 4 C -0.032 4.032 5 C 0.254 3.746 6 O -0.413 6.413 7 N -0.362 5.362 8 C 0.131 3.869 9 C -0.582 4.582 10 H 0.082 0.918 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.731 3.269 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.161 3.839 18 C -0.219 4.219 19 C -0.054 4.054 20 C -0.168 4.168 21 Cl -0.040 7.040 22 C 0.140 3.860 23 F -0.106 7.106 24 C -0.246 4.246 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.222 0.778 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.400 -11.458 -13.496 21.057 hybrid contribution 0.368 1.009 1.160 1.581 sum 11.769 -10.448 -12.336 19.996 Atomic orbital electron populations 1.22253 0.95196 1.01013 1.04584 1.21526 0.95202 0.80941 1.02447 1.46283 1.69204 1.12938 1.01816 1.21509 0.96932 0.98214 0.86509 1.21078 0.90419 0.80810 0.82303 1.90679 1.34887 1.61886 1.53869 1.46493 1.17018 1.50480 1.22164 1.19088 0.81269 0.91711 0.94832 1.21251 0.98271 1.32423 1.06301 0.91847 1.24957 0.94818 0.96180 0.98058 1.69979 1.02482 1.40610 1.39122 0.86366 0.78362 0.79381 0.82831 1.19611 1.20755 1.20794 1.17492 0.90072 0.90108 0.86235 1.20641 1.09671 1.01615 0.89975 1.20603 0.94814 0.91316 0.98647 1.20578 1.14656 0.95688 0.85861 1.98346 1.95186 1.79218 1.31242 1.17016 0.97148 0.79402 0.92389 1.91531 1.86102 1.35685 1.97279 1.20514 1.11481 0.95258 0.97359 0.92175 0.92605 0.90746 0.90519 0.90610 0.88085 0.87790 0.77764 0.95602 0.95643 0.92461 0.84494 0.84300 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.50 37.16 0.35 -1.73 16 2 C 0.12 1.18 5.92 -4.04 -0.02 1.16 16 3 N -0.60 -7.13 2.16 -173.12 -0.37 -7.50 16 4 C 0.10 1.15 5.68 -5.19 -0.03 1.12 16 5 C 0.47 8.42 7.81 -10.98 -0.09 8.33 16 6 O -0.54 -11.76 14.02 5.56 0.08 -11.68 16 7 N -0.71 -13.84 5.55 -61.47 -0.34 -14.18 16 8 C 0.25 6.44 5.43 -5.19 -0.03 6.42 16 9 C -0.54 -14.39 9.28 -34.44 -0.32 -14.71 16 10 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.88 -25.79 13.29 55.43 0.74 -25.05 16 13 Si 0.90 20.56 29.54 -169.99 -5.02 15.53 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C 0.27 3.38 6.55 -83.77 -0.55 2.83 16 18 C -0.20 -2.14 9.21 -39.38 -0.36 -2.50 16 19 C -0.03 -0.37 9.82 -39.59 -0.39 -0.76 16 20 C -0.14 -1.76 6.33 -39.41 -0.25 -2.01 16 21 Cl -0.07 -0.82 28.61 -51.86 -1.48 -2.31 16 22 C 0.16 2.27 7.27 -39.42 -0.29 1.99 16 23 F -0.13 -1.91 16.83 2.25 0.04 -1.87 16 24 C -0.22 -3.07 9.18 -39.32 -0.36 -3.43 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.17 6.39 -51.93 -0.33 0.84 16 28 H 0.08 0.58 6.20 -51.93 -0.32 0.26 16 29 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 30 H 0.10 1.05 6.21 -51.93 -0.32 0.72 16 31 H 0.10 0.96 7.89 -51.93 -0.41 0.55 16 32 H 0.39 6.34 8.32 -40.82 -0.34 6.00 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.14 1.19 6.14 -52.48 -0.32 0.87 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 1.91 6.15 -52.48 -0.32 1.58 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -32.07 340.46 -8.09 -40.16 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.43 Total: 3.42 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.43 Total: -1.64 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.02 Total: -46.74 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.48 Total: -2.31 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.07 -8.09 -40.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799342468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.975 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds