Wall clock time and date at job start Tue Mar 31 2020 10:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46835 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00280 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99788 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00327 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46999 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46979 * 120.00025 * 13 11 9 16 16 H 1.48496 * 109.47443 * 239.99733 * 13 11 9 17 17 C 1.39740 * 119.99664 * 269.99409 * 3 2 1 18 18 C 1.38927 * 120.05351 * 0.02562 * 17 3 2 19 19 C 1.38103 * 119.98877 * 179.97438 * 18 17 3 20 20 C 1.38351 * 120.08462 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 119.95008 * 179.97438 * 20 19 18 22 22 C 1.38582 * 120.10183 * 359.97438 * 20 19 18 23 23 F 1.35101 * 119.99429 * 179.97438 * 22 20 19 24 24 C 1.38338 * 120.01183 * 359.68008 * 22 20 19 25 25 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 26 26 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 28 28 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 29 29 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 30 30 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 31 31 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 32 32 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47487 * 300.00114 * 8 7 5 34 34 H 1.09002 * 109.47182 * 60.00342 * 8 7 5 35 35 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 36 36 H 1.08005 * 120.00421 * 0.02562 * 18 17 3 37 37 H 1.07999 * 119.95955 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.04591 * 180.32648 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 8 0.0060 2.7177 1.0213 7 7 0.9951 3.4888 2.8514 8 6 -0.2259 4.1789 3.2745 9 6 0.0253 4.8895 4.5795 10 1 0.9973 4.8331 5.0467 11 6 -0.9859 5.6118 5.1769 12 7 -2.1697 5.6801 4.6083 13 14 -0.6747 6.4920 6.7949 14 1 0.7282 6.2598 7.2229 15 1 -0.9031 7.9486 6.6178 16 1 -1.6017 5.9679 7.8299 17 6 2.2513 2.0399 -1.2102 18 6 2.0197 1.3861 -2.4140 19 6 2.2499 2.0385 -3.6092 20 6 2.7115 3.3427 -3.6098 21 17 3.0003 4.1593 -5.1144 22 6 2.9437 3.9984 -2.4112 23 9 3.3949 5.2718 -2.4142 24 6 2.7077 3.3512 -1.2115 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.0644 2.7986 1.1383 31 1 2.5506 1.3453 2.0283 32 1 1.7953 3.5402 3.3973 33 1 -0.5142 4.9057 2.5151 34 1 -1.0276 3.4520 3.4047 35 1 -2.8810 6.1885 5.0284 36 1 1.6590 0.3681 -2.4150 37 1 2.0701 1.5297 -4.5447 38 1 2.8834 3.8634 -0.2770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799342468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:37 Heat of formation + Delta-G solvation = -77.397137 kcal Electronic energy + Delta-G solvation = -23545.148880 eV Core-core repulsion = 19748.176860 eV Total energy + Delta-G solvation = -3796.972020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.02313 -41.17553 -39.94730 -37.86779 -36.84224 -36.01854 -34.35799 -32.90576 -31.31784 -31.10990 -29.34915 -27.45108 -24.78896 -24.37685 -23.59650 -22.01011 -21.24363 -19.24045 -19.02647 -17.88397 -17.55480 -17.39390 -17.11458 -16.87540 -16.79713 -16.30050 -15.95644 -15.44343 -15.01661 -14.93555 -14.50979 -14.27089 -14.19690 -14.02653 -13.94196 -13.69877 -13.32641 -13.08599 -12.90166 -12.78239 -12.67263 -12.57506 -12.36356 -12.22560 -11.94795 -11.63120 -11.45869 -11.06938 -10.82093 -10.45336 -9.93776 -9.78462 -8.41948 -8.29531 -6.46866 0.08862 0.21535 1.14305 1.42174 1.43107 1.56412 1.79819 1.85574 2.33492 2.51699 2.72154 3.04832 3.14244 3.60394 3.90639 3.99827 4.06290 4.16391 4.22139 4.34354 4.41135 4.49463 4.63561 4.70953 4.87144 4.92586 4.99920 5.11124 5.11466 5.14631 5.24023 5.46880 5.52842 5.55749 5.71152 5.85068 6.09906 6.31776 6.65563 6.95419 7.23354 7.54149 8.81741 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.003214 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.586042 B = 8709.730611 C = 9855.905268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 N -0.598 5.598 4 C 0.107 3.893 5 C 0.467 3.533 6 O -0.581 6.581 7 N -0.709 5.709 8 C 0.271 3.729 9 C -0.553 4.553 10 H 0.085 0.915 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.983 3.017 14 H -0.251 1.251 15 H -0.281 1.281 16 H -0.279 1.279 17 C 0.253 3.747 18 C -0.188 4.188 19 C -0.028 4.028 20 C -0.147 4.147 21 Cl -0.067 7.067 22 C 0.137 3.863 23 F -0.141 7.141 24 C -0.239 4.239 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.030 0.970 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.145 0.855 32 H 0.408 0.592 33 H -0.020 1.020 34 H -0.015 1.015 35 H 0.268 0.732 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.508 -13.338 -12.705 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.003 4.003 3 N -0.304 5.304 4 C -0.020 4.020 5 C 0.253 3.747 6 O -0.461 6.461 7 N -0.361 5.361 8 C 0.148 3.852 9 C -0.591 4.591 10 H 0.103 0.897 11 C -0.197 4.197 12 N -0.571 5.571 13 Si 0.806 3.194 14 H -0.174 1.174 15 H -0.207 1.207 16 H -0.205 1.205 17 C 0.148 3.852 18 C -0.210 4.210 19 C -0.047 4.047 20 C -0.177 4.177 21 Cl -0.038 7.038 22 C 0.116 3.884 23 F -0.119 7.119 24 C -0.263 4.263 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.050 0.950 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.163 0.837 32 H 0.244 0.756 33 H -0.002 1.002 34 H 0.003 0.997 35 H 0.076 0.924 36 H 0.183 0.817 37 H 0.187 0.813 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 13.640 -13.320 -13.110 23.137 hybrid contribution -0.372 1.524 0.927 1.822 sum 13.268 -11.795 -12.183 21.531 Atomic orbital electron populations 1.22188 0.97413 1.01578 1.01363 1.21771 0.93157 0.80105 1.05261 1.46477 1.68990 1.13606 1.01346 1.21562 0.93468 0.99248 0.87712 1.22291 0.92002 0.79626 0.80774 1.90664 1.37369 1.63123 1.54943 1.46213 1.15730 1.50648 1.23478 1.18434 0.82909 0.90041 0.93830 1.21672 0.99171 1.31986 1.06303 0.89688 1.26067 0.94388 0.97030 1.02224 1.70144 1.03805 1.41843 1.41291 0.85137 0.79195 0.77528 0.77521 1.17430 1.20732 1.20462 1.17723 0.90185 0.89920 0.87343 1.20986 1.08172 1.02659 0.89177 1.20971 0.93359 0.90442 0.99978 1.20790 1.14864 0.96485 0.85526 1.98343 1.95196 1.79389 1.30868 1.17283 0.98493 0.79270 0.93311 1.91489 1.86474 1.36567 1.97384 1.20582 1.12486 0.96089 0.97109 0.94223 0.90134 0.95046 0.87428 0.88059 0.85953 0.83698 0.75590 1.00199 0.99669 0.92351 0.81744 0.81328 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 9.50 71.98 0.68 -3.15 16 2 C 0.12 1.91 5.92 86.38 0.51 2.42 16 3 N -0.60 -12.91 2.16 -701.61 -1.52 -14.43 16 4 C 0.11 2.35 5.68 85.63 0.49 2.84 16 5 C 0.47 16.82 7.81 87.66 0.68 17.51 16 6 O -0.58 -26.63 14.02 -3.03 -0.04 -26.67 16 7 N -0.71 -27.95 5.55 -466.78 -2.59 -30.53 16 8 C 0.27 14.58 5.43 85.63 0.46 15.04 16 9 C -0.55 -29.60 9.28 25.60 0.24 -29.37 16 10 H 0.09 4.08 7.60 -2.91 -0.02 4.05 16 11 C 0.00 0.13 5.46 84.66 0.46 0.59 16 12 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 13 Si 0.98 42.05 29.54 68.60 2.03 44.08 16 14 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 15 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 17 C 0.25 6.01 6.55 38.19 0.25 6.26 16 18 C -0.19 -3.58 9.21 22.40 0.21 -3.37 16 19 C -0.03 -0.54 9.82 22.26 0.22 -0.32 16 20 C -0.15 -3.60 6.33 22.38 0.14 -3.46 16 21 Cl -0.07 -1.55 28.61 -2.72 -0.08 -1.63 16 22 C 0.14 3.88 7.27 22.38 0.16 4.04 16 23 F -0.14 -4.33 16.83 44.97 0.76 -3.58 16 24 C -0.24 -6.52 9.18 22.44 0.21 -6.31 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.03 0.99 6.39 -2.39 -0.02 0.97 16 28 H 0.11 1.12 6.20 -2.39 -0.01 1.10 16 29 H 0.10 1.18 7.89 -2.39 -0.02 1.16 16 30 H 0.12 2.24 6.21 -2.39 -0.01 2.23 16 31 H 0.15 2.06 7.89 -2.39 -0.02 2.05 16 32 H 0.41 12.86 8.32 -92.71 -0.77 12.09 16 33 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 34 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 35 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.17 2.17 6.14 -2.91 -0.02 2.15 16 37 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.14 3.68 6.15 -2.91 -0.02 3.66 16 Total: -1.00 -75.17 340.46 3.89 -71.28 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.34 Total: 14.76 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 4.72 Total: 2.71 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -3.82 Total: -100.96 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.04 Total: -26.67 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.76 Total: -3.58 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -75.17 3.89 -71.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799342468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.117 kcal (2) G-P(sol) polarization free energy of solvation -75.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds