Wall clock time and date at job start Tue Mar 31 2020 10:13:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52994 * 109.47173 * 2 1
4 4 C 1.53000 * 109.46975 * 239.99525 * 2 1 3
5 5 C 1.50701 * 109.46983 * 60.00152 * 4 2 1
6 6 H 1.07998 * 120.00145 * 359.97438 * 5 4 2
7 7 C 1.37872 * 119.99634 * 179.97438 * 5 4 2
8 8 N 1.31517 * 120.00657 * 0.02562 * 7 5 4
9 9 Si 1.86803 * 119.99703 * 180.02562 * 7 5 4
10 10 H 1.48504 * 109.47233 * 60.00389 * 9 7 5
11 11 H 1.48505 * 109.47293 * 180.02562 * 9 7 5
12 12 H 1.48501 * 109.47194 * 300.00217 * 9 7 5
13 13 C 1.53004 * 109.46866 * 119.99936 * 2 1 3
14 14 N 1.46504 * 109.46929 * 299.99940 * 13 2 1
15 15 C 1.34777 * 119.99858 * 180.02562 * 14 13 2
16 16 O 1.21543 * 119.99917 * 359.97438 * 15 14 13
17 17 C 1.47993 * 120.00262 * 180.27105 * 15 14 13
18 18 N 1.32847 * 119.73732 * 359.72826 * 17 15 14
19 19 C 1.31524 * 121.64161 * 180.02562 * 18 17 15
20 20 Cl 1.73600 * 119.52303 * 180.02562 * 19 18 17
21 21 C 1.38841 * 120.94795 * 359.97438 * 19 18 17
22 22 C 1.38387 * 119.38553 * 0.02562 * 21 19 18
23 23 C 1.38997 * 118.48463 * 359.72553 * 22 21 19
24 24 F 1.35102 * 120.49124 * 180.26698 * 23 22 21
25 25 H 1.09007 * 109.47177 * 300.00073 * 1 2 3
26 26 H 1.08994 * 109.47297 * 60.00189 * 1 2 3
27 27 H 1.08997 * 109.47361 * 180.02562 * 1 2 3
28 28 H 1.09006 * 109.47135 * 179.97438 * 3 2 1
29 29 H 1.09001 * 109.47144 * 299.99487 * 3 2 1
30 30 H 1.08998 * 109.47717 * 59.99943 * 3 2 1
31 31 H 1.08998 * 109.46983 * 180.02562 * 4 2 1
32 32 H 1.08997 * 109.47123 * 300.00203 * 4 2 1
33 33 H 0.96990 * 120.00229 * 180.02562 * 8 7 5
34 34 H 1.08998 * 109.47202 * 179.97438 * 13 2 1
35 35 H 1.08997 * 109.47419 * 59.99682 * 13 2 1
36 36 H 0.97001 * 120.00416 * 359.97438 * 14 13 2
37 37 H 1.07997 * 120.30726 * 179.97438 * 21 19 18
38 38 H 1.08000 * 120.76052 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7214 -1.2492
5 6 1.5376 -0.0110 -2.4797
6 1 0.9164 0.8669 -2.3807
7 6 1.8711 -0.4819 -3.7319
8 7 2.6272 -1.5512 -3.8525
9 14 1.2491 0.3991 -5.2571
10 1 1.7442 1.7991 -5.2568
11 1 1.7439 -0.3011 -6.4697
12 1 -0.2359 0.3992 -5.2576
13 6 2.0400 -0.7213 1.2493
14 7 1.5516 -0.0306 2.4454
15 6 1.8775 -0.4907 3.6696
16 8 2.5763 -1.4789 3.7811
17 6 1.3793 0.2034 4.8779
18 7 0.6155 1.2828 4.7500
19 6 0.1528 1.9288 5.7981
20 17 -0.8413 3.3331 5.5671
21 6 0.4472 1.5032 7.0864
22 6 1.2396 0.3831 7.2671
23 6 1.7110 -0.2839 6.1424
24 9 2.4832 -1.3849 6.2717
25 1 -0.3634 0.5139 0.8900
26 1 -0.3633 0.5138 -0.8899
27 1 -0.3634 -1.0276 0.0005
28 1 3.1301 1.4424 0.0005
29 1 1.6768 1.9563 -0.8900
30 1 1.6767 1.9564 0.8899
31 1 3.1300 -0.7218 -1.2490
32 1 1.6766 -1.7490 -1.2491
33 1 2.8621 -1.8822 -4.7335
34 1 3.1299 -0.7217 1.2491
35 1 1.6766 -1.7489 1.2494
36 1 0.9942 0.7583 2.3564
37 1 0.0622 2.0417 7.9397
38 1 1.4828 0.0327 8.2593
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000805280453.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:13:24
Heat of formation + Delta-G solvation = -64.423714 kcal
Electronic energy + Delta-G solvation = -23448.543841 eV
Core-core repulsion = 19652.134390 eV
Total energy + Delta-G solvation = -3796.409451 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.094 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-49.31371 -40.90476 -39.27041 -37.20302 -36.99800 -33.90208 -33.15027 -32.04575
-31.27856 -27.23447 -26.63519 -26.48082 -25.04731 -23.95134 -22.81702 -20.82724
-19.00113 -18.21866 -17.95810 -17.52076 -16.44526 -16.35398 -16.12022 -15.46947
-15.09361 -14.61853 -14.49064 -14.46487 -13.98548 -13.90966 -13.55896 -13.21267
-13.02307 -12.73262 -12.21493 -12.04031 -11.92838 -11.77716 -11.14982 -10.98167
-10.86908 -10.74194 -10.64812 -10.60622 -10.40715 -10.25535 -9.97814 -9.86450
-9.36922 -9.17839 -8.92877 -8.79042 -8.34261 -5.98506 -3.99781 -0.08432
0.30957 1.22647 2.35931 2.95543 3.28038 3.33560 3.38775 3.40275
3.49322 3.69780 4.05924 4.18668 4.46537 4.56670 4.77159 5.06519
5.13595 5.36958 5.48925 5.61945 5.75957 5.78070 6.20145 6.22891
6.25917 6.40414 6.49746 6.65972 6.72990 6.82917 7.07603 7.09240
7.13224 7.61658 7.65382 7.77162 8.00073 8.20033 8.42192 9.04736
9.63286 11.12967
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.019567 B = 0.003056 C = 0.002693
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1430.635677 B = 9158.651693 C =10392.908562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.072 4.072
3 C -0.129 4.129
4 C 0.037 3.963
5 C -0.512 4.512
6 H 0.059 0.941
7 C 0.057 3.943
8 N -0.895 5.895
9 Si 0.889 3.111
10 H -0.277 1.277
11 H -0.288 1.288
12 H -0.278 1.278
13 C 0.125 3.875
14 N -0.693 5.693
15 C 0.559 3.441
16 O -0.521 6.521
17 C 0.074 3.926
18 N -0.425 5.425
19 C 0.160 3.840
20 Cl -0.013 7.013
21 C -0.106 4.106
22 C -0.104 4.104
23 C 0.114 3.886
24 F -0.097 7.097
25 H 0.030 0.970
26 H 0.068 0.932
27 H 0.047 0.953
28 H 0.047 0.953
29 H 0.068 0.932
30 H 0.030 0.970
31 H 0.019 0.981
32 H 0.019 0.981
33 H 0.260 0.740
34 H 0.069 0.931
35 H 0.069 0.931
36 H 0.410 0.590
37 H 0.162 0.838
38 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.678 7.969 24.747 26.612
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.073 4.073
3 C -0.186 4.186
4 C 0.000 4.000
5 C -0.550 4.550
6 H 0.077 0.923
7 C -0.144 4.144
8 N -0.534 5.534
9 Si 0.717 3.283
10 H -0.203 1.203
11 H -0.214 1.214
12 H -0.203 1.203
13 C 0.003 3.997
14 N -0.345 5.345
15 C 0.342 3.658
16 O -0.397 6.397
17 C -0.066 4.066
18 N -0.138 5.138
19 C -0.008 4.008
20 Cl 0.016 6.984
21 C -0.127 4.127
22 C -0.131 4.131
23 C 0.090 3.910
24 F -0.075 7.075
25 H 0.049 0.951
26 H 0.087 0.913
27 H 0.067 0.933
28 H 0.067 0.933
29 H 0.087 0.913
30 H 0.049 0.951
31 H 0.037 0.963
32 H 0.037 0.963
33 H 0.070 0.930
34 H 0.087 0.913
35 H 0.087 0.913
36 H 0.247 0.753
37 H 0.179 0.821
38 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -5.333 7.485 23.764 25.480
hybrid contribution -0.367 0.515 -0.138 0.647
sum -5.700 8.000 23.626 25.587
Atomic orbital electron populations
1.21776 0.95147 1.01204 1.00455 1.20920 0.95620 0.95941 0.94804
1.21775 1.00524 0.95827 1.00456 1.19085 0.96368 0.95215 0.89380
1.21147 1.31217 1.12115 0.90501 0.92260 1.25006 0.95310 0.95071
0.99061 1.69950 1.36913 1.23026 1.23554 0.86711 0.79157 0.79779
0.82651 1.20312 1.21417 1.20317 1.21788 0.99225 0.96197 0.82531
1.46076 1.51624 1.31735 1.05019 1.17561 0.81433 0.84102 0.82742
1.90879 1.37606 1.25132 1.86090 1.21502 0.97915 0.93517 0.93689
1.67001 1.07490 1.05451 1.33846 1.21718 0.96810 0.92639 0.89591
1.98444 1.66182 1.36155 1.97639 1.21963 0.97333 0.96274 0.97118
1.21713 0.97065 0.94933 0.99357 1.18661 0.92755 0.85874 0.93660
1.91668 1.70881 1.48619 1.96299 0.95052 0.91324 0.93347 0.93346
0.91322 0.95052 0.96293 0.96296 0.92982 0.91288 0.91290 0.75251
0.82084 0.81603
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.32 8.05 37.16 0.30 -2.02 16
2 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16
3 C -0.13 -2.32 8.05 37.15 0.30 -2.02 16
4 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16
5 C -0.51 -13.62 7.65 -34.44 -0.26 -13.88 16
6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16
7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16
8 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16
9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16
10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
13 C 0.12 2.24 4.56 -4.04 -0.02 2.23 16
14 N -0.69 -10.90 4.95 -61.20 -0.30 -11.21 16
15 C 0.56 8.98 7.81 -12.26 -0.10 8.88 16
16 O -0.52 -9.92 15.31 5.33 0.08 -9.84 16
17 C 0.07 0.96 6.75 -82.96 -0.56 0.40 16
18 N -0.42 -5.00 9.52 -6.90 -0.07 -5.06 16
19 C 0.16 1.45 7.27 -17.46 -0.13 1.33 16
20 Cl -0.01 -0.10 29.10 -51.86 -1.51 -1.61 16
21 C -0.11 -0.65 9.88 -39.30 -0.39 -1.03 16
22 C -0.10 -0.70 10.16 -39.25 -0.40 -1.09 16
23 C 0.11 1.25 7.31 -38.83 -0.28 0.96 16
24 F -0.10 -1.25 15.55 2.25 0.04 -1.22 16
25 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16
26 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16
27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
29 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16
30 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16
31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
36 H 0.41 5.95 5.49 -40.82 -0.22 5.72 16
37 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16
38 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16
LS Contribution 337.50 15.07 5.09 5.09
Total: -1.00 -31.27 337.50 -7.23 -38.50
By element:
Atomic # 1 Polarization: 4.75 SS G_CDS: -4.44 Total: 0.31 kcal
Atomic # 6 Polarization: -3.63 SS G_CDS: -1.83 Total: -5.46 kcal
Atomic # 7 Polarization: -42.38 SS G_CDS: 0.37 Total: -42.02 kcal
Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal
Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.22 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Atomic # 17 Polarization: -0.10 SS G_CDS: -1.51 Total: -1.61 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -31.27 -7.23 -38.50 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000805280453.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.923 kcal
(2) G-P(sol) polarization free energy of solvation -31.271 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.195 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.501 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.424 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds