Wall clock time and date at job start Tue Mar 31 2020 10:13:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52994 * 109.47173 * 2 1
4 4 C 1.53000 * 109.46975 * 239.99525 * 2 1 3
5 5 C 1.50701 * 109.46983 * 60.00152 * 4 2 1
6 6 H 1.07998 * 120.00145 * 359.97438 * 5 4 2
7 7 C 1.37872 * 119.99634 * 179.97438 * 5 4 2
8 8 N 1.31517 * 120.00657 * 0.02562 * 7 5 4
9 9 Si 1.86803 * 119.99703 * 180.02562 * 7 5 4
10 10 H 1.48504 * 109.47233 * 60.00389 * 9 7 5
11 11 H 1.48505 * 109.47293 * 180.02562 * 9 7 5
12 12 H 1.48501 * 109.47194 * 300.00217 * 9 7 5
13 13 C 1.53004 * 109.46866 * 119.99936 * 2 1 3
14 14 N 1.46504 * 109.46929 * 299.99940 * 13 2 1
15 15 C 1.34777 * 119.99858 * 180.02562 * 14 13 2
16 16 O 1.21543 * 119.99917 * 359.97438 * 15 14 13
17 17 C 1.47993 * 120.00262 * 180.27105 * 15 14 13
18 18 N 1.32847 * 119.73732 * 359.72826 * 17 15 14
19 19 C 1.31524 * 121.64161 * 180.02562 * 18 17 15
20 20 Cl 1.73600 * 119.52303 * 180.02562 * 19 18 17
21 21 C 1.38841 * 120.94795 * 359.97438 * 19 18 17
22 22 C 1.38387 * 119.38553 * 0.02562 * 21 19 18
23 23 C 1.38997 * 118.48463 * 359.72553 * 22 21 19
24 24 F 1.35102 * 120.49124 * 180.26698 * 23 22 21
25 25 H 1.09007 * 109.47177 * 300.00073 * 1 2 3
26 26 H 1.08994 * 109.47297 * 60.00189 * 1 2 3
27 27 H 1.08997 * 109.47361 * 180.02562 * 1 2 3
28 28 H 1.09006 * 109.47135 * 179.97438 * 3 2 1
29 29 H 1.09001 * 109.47144 * 299.99487 * 3 2 1
30 30 H 1.08998 * 109.47717 * 59.99943 * 3 2 1
31 31 H 1.08998 * 109.46983 * 180.02562 * 4 2 1
32 32 H 1.08997 * 109.47123 * 300.00203 * 4 2 1
33 33 H 0.96990 * 120.00229 * 180.02562 * 8 7 5
34 34 H 1.08998 * 109.47202 * 179.97438 * 13 2 1
35 35 H 1.08997 * 109.47419 * 59.99682 * 13 2 1
36 36 H 0.97001 * 120.00416 * 359.97438 * 14 13 2
37 37 H 1.07997 * 120.30726 * 179.97438 * 21 19 18
38 38 H 1.08000 * 120.76052 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7214 -1.2492
5 6 1.5376 -0.0110 -2.4797
6 1 0.9164 0.8669 -2.3807
7 6 1.8711 -0.4819 -3.7319
8 7 2.6272 -1.5512 -3.8525
9 14 1.2491 0.3991 -5.2571
10 1 1.7442 1.7991 -5.2568
11 1 1.7439 -0.3011 -6.4697
12 1 -0.2359 0.3992 -5.2576
13 6 2.0400 -0.7213 1.2493
14 7 1.5516 -0.0306 2.4454
15 6 1.8775 -0.4907 3.6696
16 8 2.5763 -1.4789 3.7811
17 6 1.3793 0.2034 4.8779
18 7 0.6155 1.2828 4.7500
19 6 0.1528 1.9288 5.7981
20 17 -0.8413 3.3331 5.5671
21 6 0.4472 1.5032 7.0864
22 6 1.2396 0.3831 7.2671
23 6 1.7110 -0.2839 6.1424
24 9 2.4832 -1.3849 6.2717
25 1 -0.3634 0.5139 0.8900
26 1 -0.3633 0.5138 -0.8899
27 1 -0.3634 -1.0276 0.0005
28 1 3.1301 1.4424 0.0005
29 1 1.6768 1.9563 -0.8900
30 1 1.6767 1.9564 0.8899
31 1 3.1300 -0.7218 -1.2490
32 1 1.6766 -1.7490 -1.2491
33 1 2.8621 -1.8822 -4.7335
34 1 3.1299 -0.7217 1.2491
35 1 1.6766 -1.7489 1.2494
36 1 0.9942 0.7583 2.3564
37 1 0.0622 2.0417 7.9397
38 1 1.4828 0.0327 8.2593
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000805280453.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:13:21
Heat of formation + Delta-G solvation = -84.452486 kcal
Electronic energy + Delta-G solvation = -23449.412353 eV
Core-core repulsion = 19652.134390 eV
Total energy + Delta-G solvation = -3797.277963 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.094 amu
Computer time = 1.83 seconds
Orbital eigenvalues (eV)
-50.18506 -41.78809 -40.45301 -38.68604 -37.73392 -35.38137 -34.29022 -33.63772
-32.09497 -29.15514 -28.01537 -27.99424 -26.11212 -24.94363 -24.38704 -22.04564
-20.31074 -19.16302 -18.98370 -18.47991 -18.33695 -17.35325 -17.12061 -16.78592
-16.40440 -16.35638 -15.41718 -15.40797 -15.15024 -14.98362 -14.76091 -14.56540
-14.35572 -13.95117 -13.90791 -13.82518 -12.86327 -12.75928 -12.68447 -12.60091
-12.41375 -12.34169 -12.24064 -12.02666 -11.78852 -11.56530 -11.26906 -11.13154
-10.92763 -10.80659 -10.49999 -10.30165 -10.02215 -8.13327 -6.21178 -0.85197
-0.34126 0.56353 1.41047 1.43074 1.45207 1.52356 1.85430 2.33268
2.45069 2.71500 2.86938 3.21034 3.40594 3.49035 3.80017 3.91463
4.04084 4.14941 4.19569 4.50700 4.58420 4.66155 4.67828 4.72883
4.93244 5.04179 5.10046 5.11684 5.28561 5.41805 5.48004 5.50046
5.55614 5.77952 5.89585 6.01948 6.30236 6.41164 6.93268 6.96580
7.46446 8.99040
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.019567 B = 0.003056 C = 0.002693
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1430.635677 B = 9158.651693 C =10392.908562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.065 4.065
3 C -0.122 4.122
4 C 0.042 3.958
5 C -0.515 4.515
6 H 0.072 0.928
7 C -0.004 4.004
8 N -0.938 5.938
9 Si 0.958 3.042
10 H -0.267 1.267
11 H -0.291 1.291
12 H -0.267 1.267
13 C 0.137 3.863
14 N -0.687 5.687
15 C 0.557 3.443
16 O -0.561 6.561
17 C 0.046 3.954
18 N -0.444 5.444
19 C 0.150 3.850
20 Cl -0.006 7.006
21 C -0.078 4.078
22 C -0.082 4.082
23 C 0.099 3.901
24 F -0.115 7.115
25 H 0.063 0.937
26 H 0.058 0.942
27 H 0.039 0.961
28 H 0.039 0.961
29 H 0.058 0.942
30 H 0.063 0.937
31 H -0.012 1.012
32 H -0.012 1.012
33 H 0.260 0.740
34 H 0.055 0.945
35 H 0.055 0.945
36 H 0.418 0.582
37 H 0.208 0.792
38 H 0.209 0.791
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.503 10.539 27.333 30.240
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.065 4.065
3 C -0.179 4.179
4 C 0.005 3.995
5 C -0.553 4.553
6 H 0.090 0.910
7 C -0.201 4.201
8 N -0.579 5.579
9 Si 0.783 3.217
10 H -0.192 1.192
11 H -0.216 1.216
12 H -0.192 1.192
13 C 0.014 3.986
14 N -0.339 5.339
15 C 0.342 3.658
16 O -0.440 6.440
17 C -0.092 4.092
18 N -0.158 5.158
19 C -0.018 4.018
20 Cl 0.023 6.977
21 C -0.098 4.098
22 C -0.108 4.108
23 C 0.076 3.924
24 F -0.093 7.093
25 H 0.081 0.919
26 H 0.077 0.923
27 H 0.058 0.942
28 H 0.058 0.942
29 H 0.077 0.923
30 H 0.081 0.919
31 H 0.007 0.993
32 H 0.007 0.993
33 H 0.069 0.931
34 H 0.073 0.927
35 H 0.073 0.927
36 H 0.257 0.743
37 H 0.225 0.775
38 H 0.226 0.774
Dipole moment (debyes) X Y Z Total
from point charges -7.181 10.086 26.361 29.124
hybrid contribution 0.163 -0.231 -0.804 0.853
sum -7.018 9.855 25.557 28.276
Atomic orbital electron populations
1.21695 0.93676 1.01054 1.01493 1.20723 0.96682 0.96300 0.92803
1.21695 1.00033 0.94697 1.01495 1.18947 0.94400 0.94223 0.91973
1.21556 1.30541 1.12167 0.91086 0.90994 1.25930 0.95629 0.95842
1.02653 1.70109 1.38701 1.24934 1.24178 0.85604 0.78963 0.78768
0.78339 1.19159 1.21647 1.19170 1.21401 0.98306 0.95629 0.83271
1.45865 1.51788 1.31784 1.04417 1.18065 0.80483 0.83624 0.83586
1.90845 1.39364 1.26963 1.86822 1.20884 1.00548 0.95020 0.92785
1.66825 1.07949 1.05462 1.35563 1.22119 0.96745 0.92676 0.90289
1.98453 1.65894 1.35640 1.97707 1.22484 0.94965 0.95189 0.97147
1.22169 0.95208 0.93817 0.99573 1.19016 0.93131 0.85873 0.94403
1.91621 1.71597 1.49752 1.96368 0.91864 0.92272 0.94161 0.94159
0.92270 0.91862 0.99321 0.99325 0.93138 0.92699 0.92701 0.74336
0.77528 0.77418
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.34 8.05 71.98 0.58 -3.76 16
2 C -0.06 -2.55 0.54 -52.18 -0.03 -2.57 16
3 C -0.12 -4.34 8.05 71.98 0.58 -3.76 16
4 C 0.04 2.17 4.04 29.85 0.12 2.29 16
5 C -0.52 -27.93 7.65 25.60 0.20 -27.74 16
6 H 0.07 3.65 5.68 -2.91 -0.02 3.64 16
7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16
8 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16
9 Si 0.96 43.92 29.54 68.60 2.03 45.95 16
10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16
12 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16
13 C 0.14 5.16 4.56 86.38 0.39 5.55 16
14 N -0.69 -21.81 4.95 -465.81 -2.30 -24.12 16
15 C 0.56 18.32 7.81 86.83 0.68 19.00 16
16 O -0.56 -22.39 15.31 -3.85 -0.06 -22.45 16
17 C 0.05 1.16 6.75 41.88 0.28 1.44 16
18 N -0.44 -9.67 9.52 -175.75 -1.67 -11.35 16
19 C 0.15 2.25 7.27 84.88 0.62 2.87 16
20 Cl -0.01 -0.07 29.10 -2.72 -0.08 -0.15 16
21 C -0.08 -0.57 9.88 22.45 0.22 -0.35 16
22 C -0.08 -0.75 10.16 22.49 0.23 -0.52 16
23 C 0.10 2.02 7.31 22.76 0.17 2.19 16
24 F -0.12 -2.97 15.55 44.97 0.70 -2.27 16
25 H 0.06 1.84 6.86 -2.38 -0.02 1.82 16
26 H 0.06 2.22 6.62 -2.39 -0.02 2.20 16
27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16
28 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16
29 H 0.06 2.22 6.62 -2.39 -0.02 2.20 16
30 H 0.06 1.84 6.86 -2.39 -0.02 1.82 16
31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16
32 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16
33 H 0.26 15.13 8.31 -92.72 -0.77 14.36 16
34 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16
35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16
36 H 0.42 11.73 5.49 -92.71 -0.51 11.22 16
37 H 0.21 -0.32 8.06 -2.91 -0.02 -0.34 16
38 H 0.21 0.16 8.06 -2.91 -0.02 0.14 16
Total: -1.00 -72.25 337.50 3.99 -68.26
By element:
Atomic # 1 Polarization: 7.76 SS G_CDS: 0.60 Total: 8.36 kcal
Atomic # 6 Polarization: -9.61 SS G_CDS: 4.50 Total: -5.11 kcal
Atomic # 7 Polarization: -88.89 SS G_CDS: -3.69 Total: -92.58 kcal
Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.45 kcal
Atomic # 9 Polarization: -2.97 SS G_CDS: 0.70 Total: -2.27 kcal
Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal
Atomic # 17 Polarization: -0.07 SS G_CDS: -0.08 Total: -0.15 kcal
Total: -72.25 3.99 -68.26 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000805280453.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.195 kcal
(2) G-P(sol) polarization free energy of solvation -72.248 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.258 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.452 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.84 seconds