Wall clock time and date at job start Tue Mar 31 2020 10:31:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42903 * 113.99767 * 2 1
4 4 C 1.52998 * 109.47257 * 179.97438 * 3 2 1
5 5 H 1.09008 * 109.46820 * 54.99692 * 4 3 2
6 6 C 1.53001 * 109.47009 * 295.00000 * 4 3 2
7 7 C 1.52998 * 109.47529 * 174.99418 * 4 3 2
8 8 S 1.81397 * 109.47365 * 184.99820 * 7 4 3
9 9 O 1.42098 * 110.54367 * 291.62910 * 8 7 4
10 10 O 1.42101 * 110.54224 * 68.37662 * 8 7 4
11 11 O 1.52194 * 104.44952 * 180.02562 * 8 7 4
12 12 C 1.35904 * 114.00160 * 75.00487 * 11 8 7
13 13 C 1.39156 * 119.92879 * 269.72904 * 12 11 8
14 14 C 1.38529 * 120.44207 * 179.71904 * 13 12 11
15 15 C 1.37666 * 120.30433 * 0.54646 * 14 13 12
16 16 C 1.40731 * 119.85571 * 359.73274 * 15 14 13
17 17 C 1.41399 * 120.21780 * 180.02562 * 16 15 14
18 18 H 1.08000 * 120.00054 * 204.41777 * 17 16 15
19 19 C 1.39940 * 120.00134 * 24.42371 * 17 16 15
20 20 N 1.30828 * 119.99894 * 17.87841 * 19 17 16
21 21 Si 1.86798 * 119.99773 * 197.88425 * 19 17 16
22 22 H 1.48498 * 109.47134 * 89.99876 * 21 19 17
23 23 H 1.48505 * 109.46656 * 209.99429 * 21 19 17
24 24 H 1.48496 * 109.47470 * 329.99289 * 21 19 17
25 25 C 1.38097 * 119.93343 * 89.99577 * 12 11 8
26 26 H 1.09004 * 109.46916 * 180.02562 * 1 2 3
27 27 H 1.08996 * 109.47152 * 300.00482 * 1 2 3
28 28 H 1.09006 * 109.47285 * 60.00325 * 1 2 3
29 29 H 1.08995 * 109.47666 * 59.99806 * 3 2 1
30 30 H 1.09003 * 109.47074 * 299.99321 * 3 2 1
31 31 H 1.08999 * 109.47009 * 180.02562 * 6 4 3
32 32 H 1.09000 * 109.46766 * 299.99586 * 6 4 3
33 33 H 1.09004 * 109.47142 * 59.99632 * 6 4 3
34 34 H 1.09000 * 109.47151 * 305.00270 * 7 4 3
35 35 H 1.09000 * 109.46676 * 64.99833 * 7 4 3
36 36 H 1.08000 * 119.78236 * 359.97063 * 13 12 11
37 37 H 1.07998 * 119.84674 * 180.27794 * 14 13 12
38 38 H 1.07999 * 120.07190 * 179.69938 * 15 14 13
39 39 H 0.97000 * 120.00109 * 180.02562 * 20 19 17
40 40 H 1.07995 * 120.15561 * 359.97438 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1848 0.0006
5 1 3.8514 0.5683 -0.8410
6 6 3.9951 0.5371 1.3083
7 6 4.1573 2.5770 -0.1252
8 16 5.9587 2.4235 -0.2731
9 8 6.5211 1.9569 0.9456
10 8 6.3082 1.8296 -1.5158
11 8 6.4538 3.8579 -0.3895
12 6 6.4343 4.5463 0.7822
13 6 5.3026 5.2713 1.1427
14 6 5.2690 5.9721 2.3372
15 6 6.3606 5.9676 3.1761
16 6 7.5139 5.2434 2.8213
17 6 8.6392 5.2331 3.6774
18 1 9.6221 5.0374 3.2750
19 6 8.4792 5.4765 5.0462
20 7 7.2973 5.3671 5.5963
21 14 9.9534 5.9576 6.0877
22 1 10.0935 7.4360 6.0942
23 1 9.7567 5.4729 7.4776
24 1 11.1817 5.3465 5.5195
25 6 7.5396 4.5293 1.6099
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5139 0.8899
28 1 -0.3634 0.5138 -0.8900
29 1 1.6886 1.8465 0.8899
30 1 1.6886 1.8464 -0.8901
31 1 5.0818 0.4515 1.3090
32 1 3.6791 1.1536 2.1498
33 1 3.5521 -0.4548 1.3979
34 1 3.7610 3.0733 -1.0111
35 1 3.9142 3.1648 0.7599
36 1 4.4432 5.2845 0.4888
37 1 4.3840 6.5279 2.6096
38 1 6.3321 6.5192 4.1041
39 1 7.1864 5.5361 6.5450
40 1 8.4195 3.9698 1.3285
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000809837784.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:31:42
Heat of formation + Delta-G solvation = -143.684763 kcal
Electronic energy + Delta-G solvation = -24545.359232 eV
Core-core repulsion = 20838.724025 eV
Total energy + Delta-G solvation = -3706.635207 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 314.107 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.05511 -38.42522 -36.98045 -36.72857 -35.74261 -35.21444 -33.70217 -30.22734
-28.92024 -28.02974 -27.33092 -25.66635 -25.39764 -22.44453 -21.33061 -20.68053
-19.66183 -18.16765 -17.51460 -17.02575 -16.31559 -16.12817 -16.08700 -15.46636
-15.37582 -14.95063 -14.75646 -14.34002 -14.07107 -13.37191 -13.20188 -12.86319
-12.62747 -12.48984 -12.44740 -12.31039 -11.96078 -11.77451 -11.71333 -11.63877
-11.32165 -11.27409 -11.23500 -11.11884 -10.99465 -10.72186 -10.64566 -10.27148
-10.21334 -9.85304 -9.67265 -9.36163 -7.83194 -7.67926 -6.99037 -4.60598
0.53069 2.34388 2.56997 2.82221 2.98978 3.03063 3.03933 3.50284
3.79911 4.06643 4.32362 4.37972 4.55860 4.71896 4.81793 5.06728
5.12146 5.16134 5.29429 5.35647 5.42856 5.46088 5.61801 5.65940
5.80325 5.96007 5.98481 6.07415 6.11670 6.40714 6.62747 6.70586
6.79800 6.94665 6.97700 7.25078 7.37599 7.63595 7.75921 7.94586
8.34107 8.60425 8.63311 9.95868
Molecular weight = 314.11amu
Principal moments of inertia in cm(-1)
A = 0.018520 B = 0.003709 C = 0.003477
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1511.521228 B = 7546.830914 C = 8051.456613
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.389 6.389
3 C 0.073 3.927
4 C -0.073 4.073
5 H 0.090 0.910
6 C -0.177 4.177
7 C -0.655 4.655
8 S 2.600 3.400
9 O -0.937 6.937
10 O -0.951 6.951
11 O -0.666 6.666
12 C 0.078 3.922
13 C -0.262 4.262
14 C -0.087 4.087
15 C -0.154 4.154
16 C 0.118 3.882
17 C -0.448 4.448
18 H 0.085 0.915
19 C 0.075 3.925
20 N -0.782 5.782
21 Si 0.915 3.085
22 H -0.266 1.266
23 H -0.276 1.276
24 H -0.260 1.260
25 C -0.184 4.184
26 H 0.085 0.915
27 H 0.041 0.959
28 H 0.040 0.960
29 H 0.057 0.943
30 H 0.052 0.948
31 H 0.078 0.922
32 H 0.068 0.932
33 H 0.073 0.927
34 H 0.132 0.868
35 H 0.145 0.855
36 H 0.103 0.897
37 H 0.103 0.897
38 H 0.127 0.873
39 H 0.285 0.715
40 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.357 -3.687 -5.086 12.113
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.308 6.308
3 C -0.004 4.004
4 C -0.092 4.092
5 H 0.108 0.892
6 C -0.234 4.234
7 C -0.780 4.780
8 S 2.694 3.306
9 O -0.935 6.935
10 O -0.949 6.949
11 O -0.626 6.626
12 C 0.038 3.962
13 C -0.283 4.283
14 C -0.106 4.106
15 C -0.174 4.174
16 C 0.115 3.885
17 C -0.477 4.477
18 H 0.103 0.897
19 C -0.145 4.145
20 N -0.406 5.406
21 Si 0.739 3.261
22 H -0.191 1.191
23 H -0.201 1.201
24 H -0.183 1.183
25 C -0.206 4.206
26 H 0.104 0.896
27 H 0.060 0.940
28 H 0.058 0.942
29 H 0.075 0.925
30 H 0.070 0.930
31 H 0.096 0.904
32 H 0.087 0.913
33 H 0.092 0.908
34 H 0.150 0.850
35 H 0.163 0.837
36 H 0.121 0.879
37 H 0.121 0.879
38 H 0.145 0.855
39 H 0.096 0.904
40 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -9.676 -4.084 -5.110 11.680
hybrid contribution -0.500 0.592 0.385 0.865
sum -10.176 -3.491 -4.726 11.750
Atomic orbital electron populations
1.22737 0.81073 1.02711 0.99985 1.87865 1.19592 1.27945 1.95433
1.22537 0.92575 0.84587 1.00708 1.20711 0.94867 0.92618 1.01011
0.89177 1.22254 1.03324 1.01952 0.95905 1.30970 1.29079 1.05536
1.12413 1.05381 0.76857 0.73929 0.74393 1.93669 1.73527 1.79328
1.46991 1.93571 1.81639 1.74656 1.45009 1.85601 1.85787 1.47051
1.44163 1.17948 0.97716 0.99444 0.81126 1.20361 0.97633 1.09663
1.00682 1.20505 0.98032 0.98669 0.93396 1.21515 0.93842 1.01476
1.00536 1.17458 0.93218 0.87981 0.89890 1.19675 0.95057 1.41109
0.91814 0.89657 1.25978 0.97463 0.92255 0.98776 1.69796 1.24284
1.32864 1.13690 0.86183 0.81560 0.79809 0.78543 1.19060 1.20082
1.18329 1.21137 0.97371 1.04747 0.97343 0.89624 0.94009 0.94155
0.92521 0.92994 0.90356 0.91297 0.90764 0.84971 0.83668 0.87924
0.87892 0.85507 0.90369 0.87151
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 11.01 101.05 1.11 1.38 16
2 O -0.39 -4.65 10.24 -35.23 -0.36 -5.01 16
3 C 0.07 0.84 5.32 37.16 0.20 1.04 16
4 C -0.07 -0.96 2.62 -90.62 -0.24 -1.20 16
5 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16
6 C -0.18 -2.51 8.78 37.16 0.33 -2.18 16
7 C -0.66 -9.06 4.91 37.16 0.18 -8.88 16
8 S 2.60 47.93 4.82 -107.50 -0.52 47.41 16
9 O -0.94 -19.94 14.00 -67.04 -0.94 -20.88 16
10 O -0.95 -19.08 18.09 -67.03 -1.21 -20.29 16
11 O -0.67 -13.53 10.04 -51.76 -0.52 -14.05 16
12 C 0.08 1.73 4.79 -39.29 -0.19 1.55 16
13 C -0.26 -5.29 8.47 -39.13 -0.33 -5.62 16
14 C -0.09 -1.82 10.02 -39.68 -0.40 -2.22 16
15 C -0.15 -3.65 8.69 -38.85 -0.34 -3.98 16
16 C 0.12 2.98 5.57 -106.84 -0.60 2.38 16
17 C -0.45 -11.27 9.05 -37.74 -0.34 -11.61 16
18 H 0.09 2.06 7.91 -52.49 -0.41 1.65 16
19 C 0.07 1.76 5.14 -17.34 -0.09 1.67 16
20 N -0.78 -18.77 10.96 55.55 0.61 -18.17 16
21 Si 0.92 17.56 29.60 -169.99 -5.03 12.53 16
22 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16
23 H -0.28 -5.19 7.11 56.52 0.40 -4.78 16
24 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16
25 C -0.18 -4.50 8.78 -38.72 -0.34 -4.84 16
26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16
28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16
29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.08 1.22 5.61 -51.93 -0.29 0.93 16
32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16
33 H 0.07 0.95 7.82 -51.93 -0.41 0.55 16
34 H 0.13 1.46 8.14 -51.92 -0.42 1.04 16
35 H 0.15 1.98 6.62 -51.92 -0.34 1.63 16
36 H 0.10 1.71 7.51 -52.49 -0.39 1.31 16
37 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16
38 H 0.13 3.05 6.15 -52.49 -0.32 2.72 16
39 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16
40 H 0.11 2.66 8.06 -52.49 -0.42 2.23 16
LS Contribution 343.38 15.07 5.17 5.17
Total: -1.00 -29.63 343.38 -9.37 -39.01
By element:
Atomic # 1 Polarization: 12.33 SS G_CDS: -5.54 Total: 6.79 kcal
Atomic # 6 Polarization: -31.47 SS G_CDS: -1.04 Total: -32.51 kcal
Atomic # 7 Polarization: -18.77 SS G_CDS: 0.61 Total: -18.17 kcal
Atomic # 8 Polarization: -57.20 SS G_CDS: -3.03 Total: -60.24 kcal
Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal
Atomic # 16 Polarization: 47.93 SS G_CDS: -0.52 Total: 47.41 kcal
Total LS contribution 5.17 Total: 5.17 kcal
Total: -29.63 -9.37 -39.01 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000809837784.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -104.679 kcal
(2) G-P(sol) polarization free energy of solvation -29.633 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.312 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal
(6) G-S(sol) free energy of system = (1) + (5) -143.685 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds