Wall clock time and date at job start Tue Mar 31 2020 10:31:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42903 * 113.99767 * 2 1
4 4 C 1.52998 * 109.47257 * 179.97438 * 3 2 1
5 5 H 1.09008 * 109.46820 * 54.99692 * 4 3 2
6 6 C 1.53001 * 109.47009 * 295.00000 * 4 3 2
7 7 C 1.52998 * 109.47529 * 174.99418 * 4 3 2
8 8 S 1.81397 * 109.47365 * 184.99820 * 7 4 3
9 9 O 1.42098 * 110.54367 * 291.62910 * 8 7 4
10 10 O 1.42101 * 110.54224 * 68.37662 * 8 7 4
11 11 O 1.52194 * 104.44952 * 180.02562 * 8 7 4
12 12 C 1.35904 * 114.00160 * 75.00487 * 11 8 7
13 13 C 1.39156 * 119.92879 * 269.72904 * 12 11 8
14 14 C 1.38529 * 120.44207 * 179.71904 * 13 12 11
15 15 C 1.37666 * 120.30433 * 0.54646 * 14 13 12
16 16 C 1.40731 * 119.85571 * 359.73274 * 15 14 13
17 17 C 1.41399 * 120.21780 * 180.02562 * 16 15 14
18 18 H 1.08000 * 120.00054 * 204.41777 * 17 16 15
19 19 C 1.39940 * 120.00134 * 24.42371 * 17 16 15
20 20 N 1.30828 * 119.99894 * 17.87841 * 19 17 16
21 21 Si 1.86798 * 119.99773 * 197.88425 * 19 17 16
22 22 H 1.48498 * 109.47134 * 89.99876 * 21 19 17
23 23 H 1.48505 * 109.46656 * 209.99429 * 21 19 17
24 24 H 1.48496 * 109.47470 * 329.99289 * 21 19 17
25 25 C 1.38097 * 119.93343 * 89.99577 * 12 11 8
26 26 H 1.09004 * 109.46916 * 180.02562 * 1 2 3
27 27 H 1.08996 * 109.47152 * 300.00482 * 1 2 3
28 28 H 1.09006 * 109.47285 * 60.00325 * 1 2 3
29 29 H 1.08995 * 109.47666 * 59.99806 * 3 2 1
30 30 H 1.09003 * 109.47074 * 299.99321 * 3 2 1
31 31 H 1.08999 * 109.47009 * 180.02562 * 6 4 3
32 32 H 1.09000 * 109.46766 * 299.99586 * 6 4 3
33 33 H 1.09004 * 109.47142 * 59.99632 * 6 4 3
34 34 H 1.09000 * 109.47151 * 305.00270 * 7 4 3
35 35 H 1.09000 * 109.46676 * 64.99833 * 7 4 3
36 36 H 1.08000 * 119.78236 * 359.97063 * 13 12 11
37 37 H 1.07998 * 119.84674 * 180.27794 * 14 13 12
38 38 H 1.07999 * 120.07190 * 179.69938 * 15 14 13
39 39 H 0.97000 * 120.00109 * 180.02562 * 20 19 17
40 40 H 1.07995 * 120.15561 * 359.97438 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1848 0.0006
5 1 3.8514 0.5683 -0.8410
6 6 3.9951 0.5371 1.3083
7 6 4.1573 2.5770 -0.1252
8 16 5.9587 2.4235 -0.2731
9 8 6.5211 1.9569 0.9456
10 8 6.3082 1.8296 -1.5158
11 8 6.4538 3.8579 -0.3895
12 6 6.4343 4.5463 0.7822
13 6 5.3026 5.2713 1.1427
14 6 5.2690 5.9721 2.3372
15 6 6.3606 5.9676 3.1761
16 6 7.5139 5.2434 2.8213
17 6 8.6392 5.2331 3.6774
18 1 9.6221 5.0374 3.2750
19 6 8.4792 5.4765 5.0462
20 7 7.2973 5.3671 5.5963
21 14 9.9534 5.9576 6.0877
22 1 10.0935 7.4360 6.0942
23 1 9.7567 5.4729 7.4776
24 1 11.1817 5.3465 5.5195
25 6 7.5396 4.5293 1.6099
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5139 0.8899
28 1 -0.3634 0.5138 -0.8900
29 1 1.6886 1.8465 0.8899
30 1 1.6886 1.8464 -0.8901
31 1 5.0818 0.4515 1.3090
32 1 3.6791 1.1536 2.1498
33 1 3.5521 -0.4548 1.3979
34 1 3.7610 3.0733 -1.0111
35 1 3.9142 3.1648 0.7599
36 1 4.4432 5.2845 0.4888
37 1 4.3840 6.5279 2.6096
38 1 6.3321 6.5192 4.1041
39 1 7.1864 5.5361 6.5450
40 1 8.4195 3.9698 1.3285
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000809837784.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:31:42
Heat of formation + Delta-G solvation = -162.611661 kcal
Electronic energy + Delta-G solvation = -24546.179964 eV
Core-core repulsion = 20838.724025 eV
Total energy + Delta-G solvation = -3707.455939 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 314.107 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-41.68902 -39.27872 -38.67991 -38.29837 -37.24690 -36.27534 -35.44995 -31.98608
-30.66058 -29.04466 -28.27640 -27.36890 -26.27895 -24.11333 -22.99203 -21.92261
-21.17766 -19.74784 -19.00634 -18.37933 -17.95163 -17.32041 -17.01878 -16.94141
-16.72570 -16.35270 -16.04813 -15.76250 -15.31565 -14.86154 -14.46774 -14.27032
-14.05964 -14.04134 -13.86864 -13.48095 -13.32829 -13.26741 -13.19883 -12.96187
-12.83708 -12.61232 -12.54235 -12.46315 -12.24331 -12.13756 -11.99453 -11.93029
-11.45448 -11.37772 -11.08504 -10.60170 -9.60155 -9.43858 -8.73803 -6.46977
-0.92723 0.65977 0.83398 1.23616 1.40208 1.49230 1.52849 2.19973
2.49237 2.57740 2.85294 3.04024 3.49868 3.50758 3.60368 3.88410
4.06934 4.23118 4.31842 4.39126 4.40581 4.46853 4.55036 4.55789
4.64233 4.73213 4.84929 4.88565 4.89306 4.92016 5.03900 5.05131
5.20500 5.28751 5.50505 5.62556 5.87674 5.94270 6.18706 6.22121
6.52383 6.78967 6.82133 8.24057
Molecular weight = 314.11amu
Principal moments of inertia in cm(-1)
A = 0.018520 B = 0.003709 C = 0.003477
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1511.521228 B = 7546.830914 C = 8051.456613
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.414 6.414
3 C 0.075 3.925
4 C -0.078 4.078
5 H 0.092 0.908
6 C -0.182 4.182
7 C -0.625 4.625
8 S 2.591 3.409
9 O -0.976 6.976
10 O -0.974 6.974
11 O -0.674 6.674
12 C 0.078 3.922
13 C -0.244 4.244
14 C -0.082 4.082
15 C -0.172 4.172
16 C 0.091 3.909
17 C -0.493 4.493
18 H 0.075 0.925
19 C 0.040 3.960
20 N -0.810 5.810
21 Si 0.985 3.015
22 H -0.256 1.256
23 H -0.264 1.264
24 H -0.264 1.264
25 C -0.223 4.223
26 H 0.096 0.904
27 H 0.049 0.951
28 H 0.053 0.947
29 H 0.066 0.934
30 H 0.075 0.925
31 H 0.055 0.945
32 H 0.069 0.931
33 H 0.083 0.917
34 H 0.174 0.826
35 H 0.158 0.842
36 H 0.153 0.847
37 H 0.145 0.855
38 H 0.119 0.881
39 H 0.295 0.705
40 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.454 -2.849 -5.514 14.816
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.333 6.333
3 C -0.003 4.003
4 C -0.098 4.098
5 H 0.111 0.889
6 C -0.239 4.239
7 C -0.755 4.755
8 S 2.691 3.309
9 O -0.975 6.975
10 O -0.972 6.972
11 O -0.634 6.634
12 C 0.037 3.963
13 C -0.265 4.265
14 C -0.100 4.100
15 C -0.192 4.192
16 C 0.089 3.911
17 C -0.521 4.521
18 H 0.093 0.907
19 C -0.177 4.177
20 N -0.434 5.434
21 Si 0.805 3.195
22 H -0.180 1.180
23 H -0.189 1.189
24 H -0.188 1.188
25 C -0.245 4.245
26 H 0.114 0.886
27 H 0.068 0.932
28 H 0.072 0.928
29 H 0.085 0.915
30 H 0.093 0.907
31 H 0.073 0.927
32 H 0.088 0.912
33 H 0.101 0.899
34 H 0.192 0.808
35 H 0.176 0.824
36 H 0.171 0.829
37 H 0.163 0.837
38 H 0.137 0.863
39 H 0.106 0.894
40 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -12.723 -3.243 -5.551 14.255
hybrid contribution 0.265 0.231 0.373 0.513
sum -12.458 -3.012 -5.178 13.823
Atomic orbital electron populations
1.22940 0.79288 1.03863 1.01022 1.87825 1.21552 1.28306 1.95665
1.22523 0.90569 0.84883 1.02314 1.20796 0.96809 0.91843 1.00327
0.88928 1.22284 1.01899 1.02870 0.96872 1.30672 1.22857 1.06927
1.15056 1.05380 0.79326 0.72945 0.73233 1.93638 1.76156 1.79647
1.48023 1.93536 1.83476 1.74675 1.45556 1.85530 1.86961 1.47549
1.43367 1.18063 0.97636 0.99535 0.81061 1.20893 0.97956 1.06949
1.00674 1.20957 0.98285 0.98043 0.92723 1.21582 0.94569 1.01944
1.01132 1.17771 0.94247 0.88717 0.90390 1.19877 0.94927 1.44004
0.93317 0.90718 1.26726 1.00334 0.91521 0.99120 1.69807 1.25875
1.33248 1.14507 0.85160 0.77648 0.79726 0.76974 1.18044 1.18880
1.18832 1.21171 0.98317 1.06242 0.98747 0.88598 0.93212 0.92812
0.91545 0.90711 0.92655 0.91216 0.89855 0.80776 0.82438 0.82941
0.83698 0.86321 0.89442 0.89042
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.34 11.01 113.37 1.25 1.58 16
2 O -0.41 -8.62 10.24 -148.98 -1.53 -10.14 16
3 C 0.07 1.40 5.32 71.98 0.38 1.78 16
4 C -0.08 -1.84 2.62 -10.79 -0.03 -1.87 16
5 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16
6 C -0.18 -4.97 8.78 71.98 0.63 -4.33 16
7 C -0.62 -15.01 4.91 71.98 0.35 -14.66 16
8 S 2.59 94.48 4.82 -56.49 -0.27 94.20 16
9 O -0.98 -43.13 14.00 -118.57 -1.66 -44.79 16
10 O -0.97 -39.09 18.09 -118.57 -2.15 -41.23 16
11 O -0.67 -27.09 10.04 -61.56 -0.62 -27.71 16
12 C 0.08 3.41 4.79 22.46 0.11 3.52 16
13 C -0.24 -9.06 8.47 22.56 0.19 -8.87 16
14 C -0.08 -3.19 10.02 22.20 0.22 -2.97 16
15 C -0.17 -8.22 8.69 22.74 0.20 -8.02 16
16 C 0.09 4.84 5.57 -21.30 -0.12 4.72 16
17 C -0.49 -26.23 9.05 23.46 0.21 -26.01 16
18 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16
19 C 0.04 1.93 5.14 85.25 0.44 2.37 16
20 N -0.81 -39.61 10.96 21.83 0.24 -39.37 16
21 Si 0.98 36.72 29.60 68.60 2.03 38.75 16
22 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16
23 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16
24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16
25 C -0.22 -11.44 8.78 22.83 0.20 -11.24 16
26 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16
28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16
29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
31 H 0.05 1.76 5.61 -2.39 -0.01 1.75 16
32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
33 H 0.08 2.07 7.82 -2.38 -0.02 2.05 16
34 H 0.17 2.82 8.14 -2.39 -0.02 2.80 16
35 H 0.16 3.55 6.62 -2.39 -0.02 3.54 16
36 H 0.15 4.12 7.51 -2.91 -0.02 4.10 16
37 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16
38 H 0.12 5.78 6.15 -2.91 -0.02 5.76 16
39 H 0.29 12.82 8.30 -92.71 -0.77 12.05 16
40 H 0.09 4.83 8.06 -2.91 -0.02 4.80 16
Total: -1.00 -68.14 343.38 1.13 -67.01
By element:
Atomic # 1 Polarization: 26.23 SS G_CDS: 1.04 Total: 27.27 kcal
Atomic # 6 Polarization: -68.04 SS G_CDS: 4.04 Total: -64.00 kcal
Atomic # 7 Polarization: -39.61 SS G_CDS: 0.24 Total: -39.37 kcal
Atomic # 8 Polarization: -117.92 SS G_CDS: -5.95 Total: -123.87 kcal
Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal
Atomic # 16 Polarization: 94.48 SS G_CDS: -0.27 Total: 94.20 kcal
Total: -68.14 1.13 -67.01 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000809837784.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -95.598 kcal
(2) G-P(sol) polarization free energy of solvation -68.139 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.737 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.013 kcal
(6) G-S(sol) free energy of system = (1) + (5) -162.612 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds