Wall clock time and date at job start Tue Mar 31 2020 10:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00104 * 2 1 4 4 N 1.46502 * 109.46856 * 125.00119 * 3 2 1 5 5 C 1.46506 * 119.99614 * 264.78618 * 4 3 2 6 6 C 1.50699 * 109.47409 * 274.21800 * 5 4 3 7 7 H 1.07996 * 119.99932 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99959 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99928 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00053 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47230 * 89.99771 * 10 8 6 12 12 H 1.48495 * 109.47063 * 210.00252 * 10 8 6 13 13 H 1.48503 * 109.46977 * 330.00008 * 10 8 6 14 14 C 1.34769 * 120.00264 * 84.79533 * 4 3 2 15 15 O 1.21513 * 120.00354 * 3.32662 * 14 4 3 16 16 C 1.48148 * 119.99996 * 183.33099 * 14 4 3 17 17 C 1.39841 * 120.92486 * 311.14191 * 16 14 4 18 18 C 1.38128 * 119.00431 * 179.97438 * 17 16 14 19 19 N 1.31825 * 120.90016 * 359.97438 * 18 17 16 20 20 C 1.31794 * 122.04454 * 0.02562 * 19 18 17 21 21 C 1.50709 * 119.55111 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.46749 * 5.00042 * 21 20 19 23 23 F 1.39898 * 109.47198 * 124.99884 * 21 20 19 24 24 F 1.39895 * 109.46980 * 245.00154 * 21 20 19 25 25 C 1.38171 * 120.90052 * 0.02562 * 20 19 18 26 26 H 1.07997 * 119.99867 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00175 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.00255 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46852 * 5.00193 * 3 2 1 30 30 H 1.09002 * 109.47279 * 244.99650 * 3 2 1 31 31 H 1.09001 * 109.46886 * 34.22595 * 5 4 3 32 32 H 1.08997 * 109.46825 * 154.21792 * 5 4 3 33 33 H 0.97004 * 119.99556 * 179.97438 * 9 8 6 34 34 H 1.08002 * 120.49644 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.54385 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.49941 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5978 1.9679 2.3904 6 6 2.8920 3.4443 2.3217 7 1 3.3298 3.8667 1.4294 8 6 2.6023 4.2558 3.3981 9 7 2.0687 3.7414 4.4845 10 14 2.9663 6.0860 3.3126 11 1 1.7828 6.8014 2.7717 12 1 3.2723 6.5938 4.6741 13 1 4.1334 6.3175 2.4241 14 6 4.2138 0.7715 1.0141 15 8 4.5653 0.2977 -0.0482 16 6 5.1266 0.7330 2.1804 17 6 5.3688 1.8809 2.9416 18 6 6.2267 1.7999 4.0212 19 7 6.8121 0.6617 4.3368 20 6 6.6114 -0.4429 3.6464 21 6 7.3105 -1.7133 4.0568 22 9 8.0139 -1.4951 5.2463 23 9 6.3635 -2.7240 4.2538 24 9 8.2032 -2.1001 3.0515 25 6 5.7696 -0.4518 2.5507 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6214 1.4026 -0.9314 31 1 1.5307 1.8172 2.5537 32 1 3.1575 1.5238 3.2136 33 1 1.8653 4.3123 5.2419 34 1 4.8917 2.8164 2.6896 35 1 6.4197 2.6809 4.6152 36 1 5.6102 -1.3605 1.9894 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814137736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:02 Heat of formation + Delta-G solvation = -123.105311 kcal Electronic energy + Delta-G solvation = -26254.927410 eV Core-core repulsion = 21904.176655 eV Total energy + Delta-G solvation = -4350.750756 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.06534 -47.60438 -47.51073 -40.51022 -38.86223 -35.74488 -33.95994 -32.65190 -32.07725 -31.92639 -27.83707 -26.55180 -26.20612 -23.91508 -23.06374 -22.59908 -20.20373 -19.38402 -18.45693 -18.37045 -17.82209 -16.87452 -16.58429 -16.14651 -15.79508 -15.44944 -14.86325 -14.65008 -14.55017 -14.36595 -14.27387 -13.98765 -13.97781 -13.68799 -13.67794 -13.65493 -12.97013 -12.82669 -12.67793 -12.43245 -11.84062 -11.58727 -11.33425 -11.23542 -11.03119 -10.97284 -10.50035 -10.03599 -9.94335 -9.70404 -9.36406 -9.18697 -9.06858 -8.77687 -8.04118 -6.42414 -4.52983 0.91301 1.04596 2.41157 2.56875 3.04363 3.07814 3.17450 3.19177 3.54403 3.64786 3.77592 4.08119 4.14486 4.48809 4.75967 4.83995 4.87251 5.07683 5.11031 5.22497 5.42665 5.57493 5.69448 5.78487 5.95897 6.06332 6.18393 6.36898 6.45781 6.71981 6.80937 6.88561 6.98667 7.26410 7.50415 7.76350 7.78280 7.99525 8.48291 8.64688 9.14981 10.62895 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.005225 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.638405 B = 5357.915557 C = 7035.891464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 C 0.145 3.855 4 N -0.579 5.579 5 C 0.229 3.771 6 C -0.553 4.553 7 H 0.067 0.933 8 C 0.072 3.928 9 N -0.877 5.877 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.558 3.442 15 O -0.556 6.556 16 C -0.075 4.075 17 C -0.085 4.085 18 C 0.097 3.903 19 N -0.438 5.438 20 C 0.014 3.986 21 C 0.526 3.474 22 F -0.164 7.164 23 F -0.174 7.174 24 F -0.174 7.174 25 C -0.081 4.081 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.270 0.730 34 H 0.190 0.810 35 H 0.173 0.827 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.739 -5.885 -1.829 7.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.179 4.179 3 C 0.023 3.977 4 N -0.308 5.308 5 C 0.110 3.890 6 C -0.591 4.591 7 H 0.085 0.915 8 C -0.134 4.134 9 N -0.513 5.513 10 Si 0.721 3.279 11 H -0.203 1.203 12 H -0.208 1.208 13 H -0.194 1.194 14 C 0.345 3.655 15 O -0.436 6.436 16 C -0.086 4.086 17 C -0.104 4.104 18 C -0.061 4.061 19 N -0.147 5.147 20 C -0.125 4.125 21 C 0.471 3.529 22 F -0.145 7.145 23 F -0.155 7.155 24 F -0.156 7.156 25 C -0.102 4.102 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.207 0.793 35 H 0.190 0.810 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.394 -6.133 -1.448 7.682 hybrid contribution -0.491 0.829 -0.385 1.037 sum 3.903 -5.304 -1.833 6.836 Atomic orbital electron populations 1.23794 0.95730 1.01703 1.01337 1.23355 0.96124 0.99217 0.99164 1.20481 0.92060 0.95164 0.90030 1.48163 1.12706 1.53844 1.16052 1.19681 0.97423 0.92555 0.79384 1.21441 1.43705 0.92423 1.01495 0.91497 1.24978 0.94324 0.99102 0.95014 1.69927 1.40544 1.36354 1.04502 0.86543 0.79181 0.84412 0.77794 1.20262 1.20754 1.19427 1.18065 0.81900 0.78620 0.86965 1.90724 1.75805 1.48753 1.28295 1.20289 0.97678 0.94013 0.96615 1.23773 0.92815 1.01918 0.91897 1.22799 0.93092 0.94613 0.95590 1.66987 1.21408 0.98382 1.27890 1.20592 1.01325 0.93540 0.97020 1.17843 0.76784 0.83211 0.75088 1.93212 1.79461 1.94717 1.47150 1.93218 1.64688 1.62617 1.94983 1.93219 1.69345 1.92048 1.60941 1.21662 0.94089 0.99279 0.95171 0.88338 0.88765 0.87710 0.89165 0.89989 0.94164 0.94013 0.92048 0.79302 0.81044 0.83723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 14.32 29.02 0.42 -2.09 16 2 C -0.16 -2.44 9.80 -36.02 -0.35 -2.80 16 3 C 0.15 2.47 5.84 -5.19 -0.03 2.44 16 4 N -0.58 -11.21 2.45 -177.43 -0.44 -11.64 16 5 C 0.23 4.91 4.65 -5.19 -0.02 4.88 16 6 C -0.55 -12.46 6.68 -34.44 -0.23 -12.69 16 7 H 0.07 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.88 -21.74 13.29 55.43 0.74 -21.00 16 10 Si 0.89 18.27 29.54 -169.99 -5.02 13.24 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 14 C 0.56 10.99 7.25 -12.19 -0.09 10.90 16 15 O -0.56 -11.82 16.69 5.35 0.09 -11.73 16 16 C -0.07 -1.37 4.89 -104.64 -0.51 -1.88 16 17 C -0.08 -1.51 7.73 -39.02 -0.30 -1.81 16 18 C 0.10 1.58 11.17 -17.59 -0.20 1.38 16 19 N -0.44 -7.42 9.71 -9.52 -0.09 -7.51 16 20 C 0.01 0.23 6.26 -82.63 -0.52 -0.29 16 21 C 0.53 7.83 3.31 36.01 0.12 7.95 16 22 F -0.16 -2.50 16.85 2.25 0.04 -2.46 16 23 F -0.17 -2.50 17.16 2.25 0.04 -2.47 16 24 F -0.17 -2.49 17.28 2.25 0.04 -2.45 16 25 C -0.08 -1.35 9.34 -39.02 -0.36 -1.72 16 26 H 0.10 1.25 7.84 -52.49 -0.41 0.84 16 27 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.09 1.49 7.68 -51.93 -0.40 1.09 16 30 H 0.08 1.39 7.54 -51.93 -0.39 1.00 16 31 H 0.04 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.04 0.94 5.66 -51.93 -0.29 0.65 16 33 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 34 H 0.19 3.62 4.80 -52.49 -0.25 3.37 16 35 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -25.56 330.99 -5.21 -30.77 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.40 Total: 4.43 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -2.18 Total: 5.84 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.21 Total: -40.15 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.12 Total: -7.38 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.02 Total: 13.24 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -25.56 -5.21 -30.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814137736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.340 kcal (2) G-P(sol) polarization free energy of solvation -25.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds