Wall clock time and date at job start Tue Mar 31 2020 10:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00104 * 2 1 4 4 N 1.46502 * 109.46856 * 125.00119 * 3 2 1 5 5 C 1.46506 * 119.99614 * 264.78618 * 4 3 2 6 6 C 1.50699 * 109.47409 * 274.21800 * 5 4 3 7 7 H 1.07996 * 119.99932 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99959 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99928 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00053 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47230 * 89.99771 * 10 8 6 12 12 H 1.48495 * 109.47063 * 210.00252 * 10 8 6 13 13 H 1.48503 * 109.46977 * 330.00008 * 10 8 6 14 14 C 1.34769 * 120.00264 * 84.79533 * 4 3 2 15 15 O 1.21513 * 120.00354 * 3.32662 * 14 4 3 16 16 C 1.48148 * 119.99996 * 183.33099 * 14 4 3 17 17 C 1.39841 * 120.92486 * 311.14191 * 16 14 4 18 18 C 1.38128 * 119.00431 * 179.97438 * 17 16 14 19 19 N 1.31825 * 120.90016 * 359.97438 * 18 17 16 20 20 C 1.31794 * 122.04454 * 0.02562 * 19 18 17 21 21 C 1.50709 * 119.55111 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.46749 * 5.00042 * 21 20 19 23 23 F 1.39898 * 109.47198 * 124.99884 * 21 20 19 24 24 F 1.39895 * 109.46980 * 245.00154 * 21 20 19 25 25 C 1.38171 * 120.90052 * 0.02562 * 20 19 18 26 26 H 1.07997 * 119.99867 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00175 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.00255 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46852 * 5.00193 * 3 2 1 30 30 H 1.09002 * 109.47279 * 244.99650 * 3 2 1 31 31 H 1.09001 * 109.46886 * 34.22595 * 5 4 3 32 32 H 1.08997 * 109.46825 * 154.21792 * 5 4 3 33 33 H 0.97004 * 119.99556 * 179.97438 * 9 8 6 34 34 H 1.08002 * 120.49644 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.54385 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.49941 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5978 1.9679 2.3904 6 6 2.8920 3.4443 2.3217 7 1 3.3298 3.8667 1.4294 8 6 2.6023 4.2558 3.3981 9 7 2.0687 3.7414 4.4845 10 14 2.9663 6.0860 3.3126 11 1 1.7828 6.8014 2.7717 12 1 3.2723 6.5938 4.6741 13 1 4.1334 6.3175 2.4241 14 6 4.2138 0.7715 1.0141 15 8 4.5653 0.2977 -0.0482 16 6 5.1266 0.7330 2.1804 17 6 5.3688 1.8809 2.9416 18 6 6.2267 1.7999 4.0212 19 7 6.8121 0.6617 4.3368 20 6 6.6114 -0.4429 3.6464 21 6 7.3105 -1.7133 4.0568 22 9 8.0139 -1.4951 5.2463 23 9 6.3635 -2.7240 4.2538 24 9 8.2032 -2.1001 3.0515 25 6 5.7696 -0.4518 2.5507 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6214 1.4026 -0.9314 31 1 1.5307 1.8172 2.5537 32 1 3.1575 1.5238 3.2136 33 1 1.8653 4.3123 5.2419 34 1 4.8917 2.8164 2.6896 35 1 6.4197 2.6809 4.6152 36 1 5.6102 -1.3605 1.9894 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814137736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:02 Heat of formation + Delta-G solvation = -135.196381 kcal Electronic energy + Delta-G solvation = -26255.451718 eV Core-core repulsion = 21904.176655 eV Total energy + Delta-G solvation = -4351.275064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.25558 -48.77826 -48.70902 -41.92516 -40.33624 -37.28927 -35.41566 -34.27985 -33.45142 -33.24577 -29.51745 -27.89375 -27.55502 -25.44131 -24.60187 -23.95774 -21.51434 -20.66849 -19.64139 -19.59556 -19.26301 -18.57404 -18.03480 -17.62302 -17.21177 -16.87208 -16.37213 -16.11609 -15.79864 -15.69082 -15.50506 -15.29169 -15.16198 -14.99862 -14.86584 -14.86185 -14.48021 -14.31389 -14.16540 -13.89017 -13.36164 -13.05128 -12.82357 -12.72841 -12.62778 -12.27726 -12.17371 -11.69720 -11.48362 -11.11208 -10.75390 -10.62938 -10.47944 -10.31357 -9.63786 -8.21915 -6.37262 -0.46457 -0.30298 1.20230 1.33761 1.45442 1.49987 1.55576 1.59636 2.15247 2.36568 2.40007 2.44760 2.83696 3.08060 3.27784 3.36615 3.50461 3.74196 3.77419 4.01063 4.16449 4.21883 4.41466 4.46299 4.60532 4.78137 4.80972 4.98736 5.02509 5.16327 5.34045 5.53053 5.66539 5.70247 5.85269 5.99364 6.38119 6.44411 6.73619 7.03678 7.34215 8.83214 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.005225 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.638405 B = 5357.915557 C = 7035.891464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.184 4.184 3 C 0.143 3.857 4 N -0.580 5.580 5 C 0.246 3.754 6 C -0.549 4.549 7 H 0.063 0.937 8 C 0.037 3.963 9 N -0.908 5.908 10 Si 0.949 3.051 11 H -0.280 1.280 12 H -0.282 1.282 13 H -0.264 1.264 14 C 0.556 3.444 15 O -0.575 6.575 16 C -0.090 4.090 17 C -0.091 4.091 18 C 0.102 3.898 19 N -0.444 5.444 20 C 0.012 3.988 21 C 0.534 3.466 22 F -0.165 7.165 23 F -0.169 7.169 24 F -0.169 7.169 25 C -0.080 4.080 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.022 0.978 32 H 0.031 0.969 33 H 0.270 0.730 34 H 0.177 0.823 35 H 0.199 0.801 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -5.834 -1.763 7.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C 0.021 3.979 4 N -0.308 5.308 5 C 0.125 3.875 6 C -0.587 4.587 7 H 0.081 0.919 8 C -0.166 4.166 9 N -0.545 5.545 10 Si 0.774 3.226 11 H -0.206 1.206 12 H -0.207 1.207 13 H -0.188 1.188 14 C 0.344 3.656 15 O -0.457 6.457 16 C -0.101 4.101 17 C -0.111 4.111 18 C -0.055 4.055 19 N -0.153 5.153 20 C -0.126 4.126 21 C 0.479 3.521 22 F -0.146 7.146 23 F -0.151 7.151 24 F -0.150 7.150 25 C -0.101 4.101 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.194 0.806 35 H 0.215 0.785 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.474 -6.088 -1.398 7.683 hybrid contribution -0.559 0.776 -0.433 1.050 sum 3.915 -5.312 -1.831 6.848 Atomic orbital electron populations 1.24046 0.94979 1.03169 0.97846 1.23178 0.96796 0.97991 1.02356 1.20593 0.91845 0.96432 0.89020 1.48179 1.13141 1.53469 1.15992 1.19339 0.95922 0.92213 0.80009 1.21524 1.43076 0.92912 1.01184 0.91896 1.25536 0.94134 1.02255 0.94650 1.70013 1.41834 1.37552 1.05134 0.85685 0.78884 0.80341 0.77662 1.20622 1.20703 1.18790 1.18262 0.82001 0.78185 0.87153 1.90702 1.76167 1.49690 1.29134 1.20294 0.98154 0.94981 0.96644 1.23621 0.93617 1.01174 0.92683 1.23166 0.92045 0.95305 0.95003 1.67079 1.21579 0.98652 1.28030 1.20842 1.01019 0.94069 0.96686 1.17590 0.76739 0.82675 0.75098 1.93214 1.79442 1.94722 1.47198 1.93230 1.64587 1.62292 1.94960 1.93233 1.69131 1.91919 1.60736 1.21776 0.93741 0.99244 0.95341 0.87579 0.86474 0.88299 0.88971 0.90321 0.96000 0.95063 0.92077 0.80628 0.78465 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 14.32 67.78 0.97 -3.06 16 2 C -0.18 -5.53 9.80 25.65 0.25 -5.28 16 3 C 0.14 4.86 5.84 85.63 0.50 5.36 16 4 N -0.58 -22.60 2.45 -833.57 -2.04 -24.65 16 5 C 0.25 10.61 4.65 85.63 0.40 11.01 16 6 C -0.55 -24.71 6.68 25.60 0.17 -24.54 16 7 H 0.06 2.85 7.81 -2.91 -0.02 2.83 16 8 C 0.04 1.70 5.46 84.65 0.46 2.17 16 9 N -0.91 -44.86 13.29 21.45 0.28 -44.58 16 10 Si 0.95 36.89 29.54 68.60 2.03 38.92 16 11 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 12 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 13 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 14 C 0.56 22.05 7.25 86.88 0.63 22.68 16 15 O -0.58 -24.59 16.69 -3.76 -0.06 -24.65 16 16 C -0.09 -3.27 4.89 -19.88 -0.10 -3.37 16 17 C -0.09 -3.22 7.73 22.63 0.17 -3.04 16 18 C 0.10 3.21 11.17 84.67 0.95 4.16 16 19 N -0.44 -14.45 9.71 -184.04 -1.79 -16.23 16 20 C 0.01 0.39 6.26 42.55 0.27 0.66 16 21 C 0.53 15.06 3.31 71.24 0.24 15.29 16 22 F -0.16 -4.74 16.85 44.97 0.76 -3.98 16 23 F -0.17 -4.61 17.16 44.97 0.77 -3.84 16 24 F -0.17 -4.55 17.28 44.97 0.78 -3.78 16 25 C -0.08 -2.62 9.34 22.63 0.21 -2.41 16 26 H 0.11 2.48 7.84 -2.91 -0.02 2.45 16 27 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 28 H 0.10 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.09 3.03 7.68 -2.39 -0.02 3.01 16 30 H 0.08 2.69 7.54 -2.39 -0.02 2.67 16 31 H 0.02 1.02 8.10 -2.39 -0.02 1.00 16 32 H 0.03 1.43 5.66 -2.39 -0.01 1.42 16 33 H 0.27 12.78 8.31 -92.71 -0.77 12.01 16 34 H 0.18 6.74 4.80 -2.91 -0.01 6.73 16 35 H 0.20 5.00 8.06 -2.91 -0.02 4.97 16 36 H 0.16 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -52.71 330.99 6.97 -45.74 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.13 Total: 17.42 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 5.12 Total: 19.63 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -3.55 Total: -85.46 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.06 Total: -24.65 kcal Atomic # 9 Polarization: -13.91 SS G_CDS: 2.31 Total: -11.60 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -52.71 6.97 -45.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814137736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.458 kcal (2) G-P(sol) polarization free energy of solvation -52.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds