Wall clock time and date at job start Tue Mar 31 2020 10:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46744 * 2 1 4 4 H 1.09001 * 109.47507 * 55.00400 * 3 2 1 5 5 C 1.53002 * 109.47146 * 175.00099 * 3 2 1 6 6 S 1.81402 * 109.47151 * 57.13370 * 5 3 2 7 7 O 1.42104 * 110.54120 * 62.56147 * 6 5 3 8 8 O 1.42103 * 110.54472 * 285.81387 * 6 5 3 9 9 O 1.52195 * 104.45303 * 174.18585 * 6 5 3 10 10 C 1.35684 * 113.99954 * 75.00016 * 9 6 5 11 11 C 1.39306 * 119.81605 * 269.72683 * 10 9 6 12 12 C 1.36440 * 120.18394 * 179.75920 * 11 10 9 13 13 C 1.40831 * 119.80973 * 0.51384 * 12 11 10 14 14 C 1.41212 * 120.18081 * 179.72080 * 13 12 11 15 15 H 1.08001 * 120.00212 * 208.40255 * 14 13 12 16 16 C 1.39891 * 120.00355 * 28.40056 * 14 13 12 17 17 N 1.30886 * 119.99423 * 12.86563 * 16 14 13 18 18 Si 1.86797 * 120.00200 * 192.86794 * 16 14 13 19 19 H 1.48497 * 109.47287 * 90.00221 * 18 16 14 20 20 H 1.48500 * 109.47000 * 209.99870 * 18 16 14 21 21 H 1.48500 * 109.47017 * 329.99495 * 18 16 14 22 22 C 1.40839 * 119.64181 * 359.74246 * 13 12 11 23 23 C 1.36441 * 119.80951 * 359.97438 * 22 13 12 24 24 O 1.42899 * 109.47637 * 295.00131 * 3 2 1 25 25 C 1.42899 * 113.99995 * 152.78709 * 24 3 2 26 26 H 1.09004 * 109.47090 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47166 * 299.99928 * 1 2 3 28 28 H 1.09000 * 109.47604 * 59.99923 * 1 2 3 29 29 H 1.08997 * 109.47392 * 240.00510 * 2 1 3 30 30 H 1.08998 * 109.47122 * 119.99905 * 2 1 3 31 31 H 1.09004 * 109.47092 * 297.14262 * 5 3 2 32 32 H 1.08992 * 109.47410 * 177.13826 * 5 3 2 33 33 H 1.08005 * 119.91305 * 0.02562 * 11 10 9 34 34 H 1.07998 * 120.09632 * 180.25633 * 12 11 10 35 35 H 0.97006 * 119.99648 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.09445 * 179.97438 * 22 13 12 37 37 H 1.07997 * 119.90731 * 179.97438 * 23 22 13 38 38 H 1.09002 * 109.47116 * 64.90168 * 25 24 3 39 39 H 1.09002 * 109.46814 * 184.89532 * 25 24 3 40 40 H 1.08995 * 109.47489 * 304.89641 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4445 0.1257 6 16 4.2843 0.4758 -1.2287 7 8 3.9737 1.0659 -2.4836 8 8 4.0914 -0.9142 -1.0050 9 8 5.7861 0.6747 -1.0819 10 6 6.3377 -0.0237 -0.0577 11 6 6.4283 0.5555 1.2060 12 6 6.9772 -0.1418 2.2424 13 6 7.4627 -1.4465 2.0292 14 6 8.0377 -2.1730 3.0949 15 1 8.7908 -2.9207 2.8944 16 6 7.6319 -1.9243 4.4103 17 7 6.5572 -1.2133 4.6402 18 14 8.6236 -2.6067 5.8386 19 1 9.6616 -1.6219 6.2359 20 1 7.7210 -2.8657 6.9890 21 1 9.2766 -3.8752 5.4265 22 6 7.3722 -2.0225 0.7472 23 6 6.8152 -1.3138 -0.2771 24 8 1.6618 2.0815 -1.2210 25 6 1.5170 3.4991 -1.1145 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8512 1.0028 1.0802 32 1 3.9322 2.4693 0.0746 33 1 6.0591 1.5576 1.3670 34 1 7.0429 0.3070 3.2225 35 1 6.2760 -1.0405 5.5524 36 1 7.7426 -3.0224 0.5754 37 1 6.7453 -1.7539 -1.2609 38 1 2.4842 3.9471 -0.8864 39 1 1.1453 3.8983 -2.0582 40 1 0.8111 3.7335 -0.3177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817128030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:03 Heat of formation + Delta-G solvation = -143.500174 kcal Electronic energy + Delta-G solvation = -25005.318926 eV Core-core repulsion = 21298.691723 eV Total energy + Delta-G solvation = -3706.627203 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.80927 -38.63556 -37.00930 -36.44161 -35.37228 -33.88160 -33.74056 -30.41865 -29.82656 -29.50790 -26.82196 -25.50313 -24.00410 -21.92933 -21.59741 -21.12324 -19.48592 -17.89908 -17.62874 -17.13606 -16.76620 -15.96520 -15.61862 -15.38642 -15.16990 -14.57211 -14.22028 -14.17791 -13.89484 -13.49063 -13.04951 -12.85323 -12.54082 -12.47596 -12.31942 -12.09823 -11.97251 -11.73872 -11.59369 -11.52646 -11.38164 -11.32529 -11.23136 -11.14959 -11.03904 -10.83008 -10.66331 -10.14123 -10.04195 -9.78246 -9.61539 -9.48322 -7.96111 -7.62101 -7.11875 -4.72540 0.81387 2.31997 2.76953 2.88807 2.91072 2.93701 3.13167 3.64046 3.67967 4.22537 4.26743 4.47220 4.64582 4.87880 5.04520 5.21835 5.24156 5.29692 5.34004 5.43406 5.50160 5.60632 5.77167 5.81007 5.86394 6.00806 6.01506 6.06065 6.16191 6.30542 6.63565 6.69430 6.82228 6.91128 7.04469 7.22085 7.53621 7.56657 7.68312 7.87272 8.22645 8.48132 8.54919 9.81133 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.004050 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.349976 B = 6911.231682 C = 7541.793337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.079 0.921 5 C -0.688 4.688 6 S 2.581 3.419 7 O -0.947 6.947 8 O -0.957 6.957 9 O -0.647 6.647 10 C -0.097 4.097 11 C -0.101 4.101 12 C -0.150 4.150 13 C 0.121 3.879 14 C -0.434 4.434 15 H 0.088 0.912 16 C 0.070 3.930 17 N -0.779 5.779 18 Si 0.919 3.081 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.213 4.213 23 C -0.044 4.044 24 O -0.375 6.375 25 C 0.029 3.971 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.288 0.712 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.001 5.561 -0.993 8.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.186 4.186 3 C 0.047 3.953 4 H 0.097 0.903 5 C -0.811 4.811 6 S 2.678 3.322 7 O -0.945 6.945 8 O -0.955 6.955 9 O -0.606 6.606 10 C -0.142 4.142 11 C -0.122 4.122 12 C -0.170 4.170 13 C 0.117 3.883 14 C -0.463 4.463 15 H 0.106 0.894 16 C -0.150 4.150 17 N -0.403 5.403 18 Si 0.743 3.257 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.182 1.182 22 C -0.233 4.233 23 C -0.065 4.065 24 O -0.293 6.293 25 C -0.067 4.067 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.165 0.835 32 H 0.146 0.854 33 H 0.120 0.880 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.135 5.328 -1.715 9.069 hybrid contribution 0.128 0.538 1.461 1.563 sum -7.007 5.866 -0.253 9.142 Atomic orbital electron populations 1.21671 0.94374 1.02124 1.02056 1.22040 0.97998 0.93654 1.04920 1.21783 0.89391 0.95525 0.88553 0.90263 1.31394 1.08079 1.17259 1.24402 1.06549 0.74662 0.75245 0.75780 1.93536 1.82860 1.79567 1.38534 1.93583 1.84445 1.31229 1.86270 1.85644 1.44448 1.74199 1.56342 1.17611 1.18145 0.94027 0.84367 1.20543 1.01623 0.98486 0.91530 1.20965 1.03805 0.94526 0.97748 1.17831 0.87603 0.91002 0.91874 1.19821 1.18613 1.17487 0.90388 0.89377 1.26076 0.94190 0.93725 1.00999 1.69797 1.18166 1.28599 1.23731 0.86108 0.80026 0.80387 0.79191 1.18952 1.19955 1.18231 1.20716 1.09336 0.99570 0.93672 1.20394 0.95771 0.91783 0.98576 1.88036 1.89200 1.20102 1.31983 1.22824 1.00105 0.81327 1.02449 0.92112 0.92841 0.91890 0.90272 0.88759 0.83513 0.85353 0.87996 0.85219 0.90139 0.87341 0.87681 0.93966 0.89274 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.81 37.16 0.36 -1.34 16 2 C -0.15 -2.18 4.89 -26.73 -0.13 -2.31 16 3 C 0.11 1.53 2.39 -26.73 -0.06 1.46 16 4 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 5 C -0.69 -10.81 5.16 37.16 0.19 -10.62 16 6 S 2.58 51.66 4.28 -107.50 -0.46 51.20 16 7 O -0.95 -20.73 17.26 -68.86 -1.19 -21.92 16 8 O -0.96 -21.13 14.42 -67.04 -0.97 -22.10 16 9 O -0.65 -13.83 10.03 -51.08 -0.51 -14.34 16 10 C -0.10 -2.18 4.82 -38.79 -0.19 -2.37 16 11 C -0.10 -2.19 8.47 -39.83 -0.34 -2.52 16 12 C -0.15 -3.50 8.61 -39.25 -0.34 -3.84 16 13 C 0.12 2.93 5.55 -106.80 -0.59 2.33 16 14 C -0.43 -10.22 9.04 -37.83 -0.34 -10.56 16 15 H 0.09 1.96 7.88 -52.49 -0.41 1.55 16 16 C 0.07 1.56 5.21 -17.34 -0.09 1.47 16 17 N -0.78 -17.76 10.92 55.54 0.61 -17.15 16 18 Si 0.92 16.53 29.58 -169.99 -5.03 11.50 16 19 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 20 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 22 C -0.21 -4.91 9.74 -39.25 -0.38 -5.30 16 23 C -0.04 -1.02 8.97 -39.83 -0.36 -1.38 16 24 O -0.37 -5.64 8.88 -44.97 -0.40 -6.04 16 25 C 0.03 0.33 10.85 101.05 1.10 1.43 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 29 H 0.08 1.31 6.07 -51.93 -0.32 1.00 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.15 2.26 7.03 -51.92 -0.37 1.89 16 32 H 0.13 1.74 7.69 -51.93 -0.40 1.34 16 33 H 0.10 1.87 7.62 -52.48 -0.40 1.47 16 34 H 0.13 3.01 6.26 -52.49 -0.33 2.69 16 35 H 0.29 5.89 8.30 -40.82 -0.34 5.56 16 36 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 37 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.04 0.45 7.70 -51.93 -0.40 0.05 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.38 7.97 -51.93 -0.41 -0.03 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -29.01 340.98 -9.49 -38.51 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.51 Total: 8.75 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: -1.17 Total: -33.55 kcal Atomic # 7 Polarization: -17.76 SS G_CDS: 0.61 Total: -17.15 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -3.07 Total: -64.40 kcal Atomic # 14 Polarization: 16.53 SS G_CDS: -5.03 Total: 11.50 kcal Atomic # 16 Polarization: 51.66 SS G_CDS: -0.46 Total: 51.20 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.01 -9.49 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817128030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.992 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds