Wall clock time and date at job start Tue Mar 31 2020 10:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 H 1.09003 * 109.46967 * 305.00735 * 3 2 1 5 5 C 1.53007 * 109.47068 * 64.99786 * 3 2 1 6 6 C 1.52993 * 109.47577 * 185.00249 * 3 2 1 7 7 S 1.81406 * 109.47323 * 175.00155 * 6 3 2 8 8 O 1.42102 * 110.54077 * 68.37220 * 7 6 3 9 9 O 1.42100 * 110.54012 * 291.61937 * 7 6 3 10 10 O 1.52202 * 104.44758 * 179.97438 * 7 6 3 11 11 C 1.35904 * 113.99732 * 75.00229 * 10 7 6 12 12 C 1.38827 * 120.01699 * 269.97476 * 11 10 7 13 13 C 1.38189 * 120.07975 * 180.02562 * 12 11 10 14 14 C 1.38149 * 120.12386 * 359.97438 * 13 12 11 15 15 C 1.38898 * 120.04054 * 0.03975 * 14 13 12 16 16 O 1.35749 * 120.03866 * 179.97438 * 15 14 13 17 17 C 1.34836 * 117.00488 * 354.39630 * 16 15 14 18 18 H 1.07999 * 119.99235 * 5.04658 * 17 16 15 19 19 C 1.38653 * 119.99938 * 185.05439 * 17 16 15 20 20 N 1.31557 * 119.99357 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00284 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46774 * 90.00587 * 21 19 17 23 23 H 1.48497 * 109.47124 * 210.00087 * 21 19 17 24 24 H 1.48496 * 109.47185 * 330.00756 * 21 19 17 25 25 C 1.38564 * 120.02268 * 89.99553 * 11 10 7 26 26 H 1.09002 * 109.47604 * 299.99591 * 1 2 3 27 27 H 1.08995 * 109.47427 * 60.00432 * 1 2 3 28 28 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47034 * 239.99949 * 2 1 3 30 30 H 1.09003 * 109.47309 * 120.00209 * 2 1 3 31 31 H 1.09004 * 109.47199 * 300.00434 * 5 3 2 32 32 H 1.08997 * 109.46531 * 60.00192 * 5 3 2 33 33 H 1.08996 * 109.46829 * 180.02562 * 5 3 2 34 34 H 1.08995 * 109.47410 * 54.99547 * 6 3 2 35 35 H 1.09005 * 109.47050 * 294.99659 * 6 3 2 36 36 H 1.08001 * 119.96166 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.93893 * 180.02562 * 13 12 11 38 38 H 1.07999 * 119.98219 * 180.02562 * 14 13 12 39 39 H 0.97005 * 119.99596 * 180.02562 * 20 19 17 40 40 H 1.08005 * 120.06149 * 359.70298 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5647 1.4444 -0.1258 7 16 4.1571 3.1525 -0.2744 8 8 3.9595 3.8566 0.9440 9 8 3.7569 3.7127 -1.5175 10 8 5.6690 3.0214 -0.3907 11 6 6.0941 2.5843 -1.6053 12 6 6.2428 1.2243 -1.8409 13 6 6.6755 0.7784 -3.0753 14 6 6.9608 1.6842 -4.0786 15 6 6.8141 3.0461 -3.8483 16 8 7.0949 3.9361 -4.8341 17 6 7.6218 3.4424 -5.9728 18 1 7.7262 2.3751 -6.1011 19 6 8.0296 4.3049 -6.9789 20 7 8.5431 3.8230 -8.0902 21 14 7.8485 6.1508 -6.7572 22 1 9.0792 6.6972 -6.1312 23 1 7.6408 6.7904 -8.0812 24 1 6.6816 6.4322 -5.8829 25 6 6.3797 3.4958 -2.6091 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5488 2.1252 1.3970 32 1 2.0698 1.5875 2.1491 33 1 1.9981 3.1543 1.3072 34 1 3.8570 0.8801 -1.0113 35 1 4.0029 0.9837 0.7596 36 1 6.0201 0.5138 -1.0586 37 1 6.7900 -0.2801 -3.2562 38 1 7.2984 1.3332 -5.0426 39 1 8.8288 4.4264 -8.7939 40 1 6.2603 4.5540 -2.4290 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841565657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:08 Heat of formation + Delta-G solvation = -117.767220 kcal Electronic energy + Delta-G solvation = -24404.087949 eV Core-core repulsion = 20698.576610 eV Total energy + Delta-G solvation = -3705.511338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76966 -38.91483 -37.38552 -37.11537 -36.25312 -35.96950 -32.58518 -31.12997 -30.28338 -29.21806 -27.79934 -25.51377 -24.19713 -23.15235 -22.05509 -20.59063 -20.12643 -18.57432 -17.91111 -17.73804 -17.08381 -16.46144 -15.69758 -15.65601 -15.20662 -14.92565 -14.71666 -14.26961 -14.05603 -13.79284 -13.47896 -13.33507 -13.22676 -12.95047 -12.48637 -12.44331 -12.36086 -12.19319 -12.05792 -12.01128 -11.78544 -11.58702 -11.46037 -11.42814 -11.16941 -11.02564 -10.92295 -10.88273 -10.38205 -10.29824 -9.63872 -9.05351 -8.55065 -7.73976 -6.58604 -4.25887 0.11959 1.56900 1.84509 2.26979 3.15551 3.19555 3.35350 3.62449 3.96990 4.09335 4.12944 4.17890 4.42973 4.53796 4.56892 4.87745 4.92844 5.06595 5.10705 5.15615 5.20041 5.27494 5.30614 5.44122 5.49316 5.65274 5.70353 5.71060 5.72268 5.78271 5.86424 6.00465 6.08246 6.12671 6.42230 6.52320 6.73225 6.94214 7.24674 7.55984 7.81730 8.74814 9.31972 10.47521 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.003503 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.358096 B = 7991.062460 C = 8318.848245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.079 4.079 4 H 0.087 0.913 5 C -0.183 4.183 6 C -0.650 4.650 7 S 2.592 3.408 8 O -0.936 6.936 9 O -0.943 6.943 10 O -0.662 6.662 11 C 0.097 3.903 12 C -0.223 4.223 13 C -0.056 4.056 14 C -0.207 4.207 15 C 0.171 3.829 16 O -0.202 6.202 17 C -0.394 4.394 18 H 0.111 0.889 19 C 0.068 3.932 20 N -0.869 5.869 21 Si 0.903 3.097 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.256 1.256 25 C -0.158 4.158 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.283 0.717 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 -8.212 14.814 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.150 4.150 3 C -0.098 4.098 4 H 0.105 0.895 5 C -0.240 4.240 6 C -0.776 4.776 7 S 2.688 3.312 8 O -0.934 6.934 9 O -0.942 6.942 10 O -0.622 6.622 11 C 0.056 3.944 12 C -0.244 4.244 13 C -0.074 4.074 14 C -0.227 4.227 15 C 0.117 3.883 16 O -0.105 6.105 17 C -0.468 4.468 18 H 0.128 0.872 19 C -0.137 4.137 20 N -0.505 5.505 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.180 1.180 25 C -0.180 4.180 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.093 0.907 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.809 -7.133 14.699 19.590 hybrid contribution -0.023 -0.039 0.092 0.102 sum -10.832 -7.172 14.790 19.685 Atomic orbital electron populations 1.21865 0.95507 1.01850 1.02267 1.21524 0.96073 0.94768 1.02603 1.20880 0.89930 0.99195 0.99805 0.89515 1.22369 1.02992 1.01920 0.96711 1.30953 1.06936 1.27395 1.12320 1.05598 0.73492 0.77441 0.74713 1.93591 1.83021 1.69791 1.47044 1.93688 1.81126 1.75358 1.43995 1.85633 1.49241 1.85847 1.41453 1.17502 1.05254 0.92406 0.79255 1.20727 1.11903 0.92413 0.99328 1.20636 0.96047 0.99247 0.91510 1.21492 1.07153 0.92458 1.01589 1.18659 0.93149 0.88957 0.87516 1.83587 1.70151 1.34108 1.22698 1.20819 1.40132 0.95611 0.90273 0.87172 1.24490 0.94698 1.00600 0.93920 1.69635 1.38254 1.36868 1.05696 0.86199 0.80191 0.82634 0.78163 1.19596 1.20464 1.17950 1.20159 1.06731 1.00109 0.90984 0.92283 0.92401 0.92551 0.91368 0.91558 0.90964 0.91471 0.90805 0.84071 0.84628 0.85721 0.85445 0.83786 0.90675 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.11 -0.87 5.40 -26.73 -0.14 -1.01 16 3 C -0.08 -0.75 2.39 -90.62 -0.22 -0.97 16 4 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.18 -1.70 8.64 37.16 0.32 -1.38 16 6 C -0.65 -6.62 4.90 37.15 0.18 -6.44 16 7 S 2.59 38.41 4.82 -107.50 -0.52 37.90 16 8 O -0.94 -15.34 15.84 -67.04 -1.06 -16.40 16 9 O -0.94 -17.07 16.26 -67.03 -1.09 -18.16 16 10 O -0.66 -10.76 10.05 -51.76 -0.52 -11.28 16 11 C 0.10 1.72 4.80 -39.24 -0.19 1.53 16 12 C -0.22 -3.33 8.46 -39.38 -0.33 -3.67 16 13 C -0.06 -0.87 10.03 -39.63 -0.40 -1.27 16 14 C -0.21 -4.01 9.17 -39.37 -0.36 -4.37 16 15 C 0.17 3.79 6.64 -39.13 -0.26 3.53 16 16 O -0.20 -5.12 8.58 0.04 0.00 -5.12 16 17 C -0.39 -10.50 9.95 30.89 0.31 -10.19 16 18 H 0.11 2.92 5.43 -52.49 -0.29 2.64 16 19 C 0.07 1.83 5.49 -17.52 -0.10 1.73 16 20 N -0.87 -23.91 13.96 55.48 0.77 -23.13 16 21 Si 0.90 20.97 28.62 -169.99 -4.86 16.11 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.16 -3.24 8.99 -39.25 -0.35 -3.60 16 26 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.55 6.57 -51.93 -0.34 0.21 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.81 5.61 -51.93 -0.29 0.52 16 34 H 0.14 1.31 6.60 -51.93 -0.34 0.97 16 35 H 0.14 1.06 8.14 -51.92 -0.42 0.63 16 36 H 0.12 1.38 7.49 -52.49 -0.39 0.99 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.14 2.85 5.63 -52.49 -0.30 2.55 16 39 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.13 2.70 8.06 -52.48 -0.42 2.28 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -31.10 339.30 -8.58 -39.68 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.23 Total: 2.13 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -1.18 Total: -26.84 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.77 Total: -23.13 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -2.67 Total: -50.96 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.86 Total: 16.11 kcal Atomic # 16 Polarization: 38.41 SS G_CDS: -0.52 Total: 37.90 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.10 -8.58 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841565657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.086 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds