Wall clock time and date at job start Tue Mar 31 2020 10:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 H 1.09003 * 109.46967 * 305.00735 * 3 2 1 5 5 C 1.53007 * 109.47068 * 64.99786 * 3 2 1 6 6 C 1.52993 * 109.47577 * 185.00249 * 3 2 1 7 7 S 1.81406 * 109.47323 * 175.00155 * 6 3 2 8 8 O 1.42102 * 110.54077 * 68.37220 * 7 6 3 9 9 O 1.42100 * 110.54012 * 291.61937 * 7 6 3 10 10 O 1.52202 * 104.44758 * 179.97438 * 7 6 3 11 11 C 1.35904 * 113.99732 * 75.00229 * 10 7 6 12 12 C 1.38827 * 120.01699 * 269.97476 * 11 10 7 13 13 C 1.38189 * 120.07975 * 180.02562 * 12 11 10 14 14 C 1.38149 * 120.12386 * 359.97438 * 13 12 11 15 15 C 1.38898 * 120.04054 * 0.03975 * 14 13 12 16 16 O 1.35749 * 120.03866 * 179.97438 * 15 14 13 17 17 C 1.34836 * 117.00488 * 354.39630 * 16 15 14 18 18 H 1.07999 * 119.99235 * 5.04658 * 17 16 15 19 19 C 1.38653 * 119.99938 * 185.05439 * 17 16 15 20 20 N 1.31557 * 119.99357 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00284 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46774 * 90.00587 * 21 19 17 23 23 H 1.48497 * 109.47124 * 210.00087 * 21 19 17 24 24 H 1.48496 * 109.47185 * 330.00756 * 21 19 17 25 25 C 1.38564 * 120.02268 * 89.99553 * 11 10 7 26 26 H 1.09002 * 109.47604 * 299.99591 * 1 2 3 27 27 H 1.08995 * 109.47427 * 60.00432 * 1 2 3 28 28 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47034 * 239.99949 * 2 1 3 30 30 H 1.09003 * 109.47309 * 120.00209 * 2 1 3 31 31 H 1.09004 * 109.47199 * 300.00434 * 5 3 2 32 32 H 1.08997 * 109.46531 * 60.00192 * 5 3 2 33 33 H 1.08996 * 109.46829 * 180.02562 * 5 3 2 34 34 H 1.08995 * 109.47410 * 54.99547 * 6 3 2 35 35 H 1.09005 * 109.47050 * 294.99659 * 6 3 2 36 36 H 1.08001 * 119.96166 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.93893 * 180.02562 * 13 12 11 38 38 H 1.07999 * 119.98219 * 180.02562 * 14 13 12 39 39 H 0.97005 * 119.99596 * 180.02562 * 20 19 17 40 40 H 1.08005 * 120.06149 * 359.70298 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5647 1.4444 -0.1258 7 16 4.1571 3.1525 -0.2744 8 8 3.9595 3.8566 0.9440 9 8 3.7569 3.7127 -1.5175 10 8 5.6690 3.0214 -0.3907 11 6 6.0941 2.5843 -1.6053 12 6 6.2428 1.2243 -1.8409 13 6 6.6755 0.7784 -3.0753 14 6 6.9608 1.6842 -4.0786 15 6 6.8141 3.0461 -3.8483 16 8 7.0949 3.9361 -4.8341 17 6 7.6218 3.4424 -5.9728 18 1 7.7262 2.3751 -6.1011 19 6 8.0296 4.3049 -6.9789 20 7 8.5431 3.8230 -8.0902 21 14 7.8485 6.1508 -6.7572 22 1 9.0792 6.6972 -6.1312 23 1 7.6408 6.7904 -8.0812 24 1 6.6816 6.4322 -5.8829 25 6 6.3797 3.4958 -2.6091 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5488 2.1252 1.3970 32 1 2.0698 1.5875 2.1491 33 1 1.9981 3.1543 1.3072 34 1 3.8570 0.8801 -1.0113 35 1 4.0029 0.9837 0.7596 36 1 6.0201 0.5138 -1.0586 37 1 6.7900 -0.2801 -3.2562 38 1 7.2984 1.3332 -5.0426 39 1 8.8288 4.4264 -8.7939 40 1 6.2603 4.5540 -2.4290 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841565657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:07 Heat of formation + Delta-G solvation = -138.238076 kcal Electronic energy + Delta-G solvation = -24404.975632 eV Core-core repulsion = 20698.576610 eV Total energy + Delta-G solvation = -3706.399021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.13743 -40.53474 -38.41343 -38.09530 -37.74024 -37.22460 -34.51460 -31.88662 -31.68735 -30.68911 -28.59866 -27.35727 -24.89003 -24.59638 -23.46503 -21.78838 -21.06807 -20.06635 -19.57401 -19.00622 -18.30849 -17.92766 -17.12444 -16.74802 -16.61367 -15.94259 -15.83179 -15.80727 -15.59671 -14.93322 -14.68272 -14.44703 -14.35824 -14.20863 -14.14789 -13.73240 -13.54450 -13.30811 -13.12049 -13.05631 -13.00350 -12.82686 -12.59439 -12.54532 -12.47026 -12.35183 -12.03984 -11.82612 -11.48443 -11.47326 -11.23913 -10.96641 -9.98857 -9.35238 -8.55057 -6.27962 -1.05300 0.14010 0.39197 1.00969 1.30079 1.31866 1.49530 2.24521 2.49102 2.54557 2.78802 2.98458 3.02681 3.38120 3.65189 3.79392 3.88093 3.99517 4.09384 4.16530 4.25487 4.40875 4.46466 4.50815 4.56697 4.60355 4.67433 4.75571 5.01032 5.03780 5.07557 5.09133 5.15156 5.20147 5.23737 5.40305 5.45483 5.51985 5.64095 5.74720 6.00645 6.78935 7.48306 8.55215 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.003503 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.358096 B = 7991.062460 C = 8318.848245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.108 4.108 3 C -0.086 4.086 4 H 0.078 0.922 5 C -0.190 4.190 6 C -0.619 4.619 7 S 2.577 3.423 8 O -0.960 6.960 9 O -0.988 6.988 10 O -0.667 6.667 11 C 0.095 3.905 12 C -0.186 4.186 13 C -0.042 4.042 14 C -0.213 4.213 15 C 0.139 3.861 16 O -0.240 6.240 17 C -0.402 4.402 18 H 0.099 0.901 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 0.956 3.044 22 H -0.265 1.265 23 H -0.264 1.264 24 H -0.270 1.270 25 C -0.186 4.186 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.181 0.819 38 H 0.134 0.866 39 H 0.287 0.713 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.177 -11.658 17.651 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.146 4.146 3 C -0.106 4.106 4 H 0.096 0.904 5 C -0.247 4.247 6 C -0.750 4.750 7 S 2.679 3.321 8 O -0.958 6.958 9 O -0.986 6.986 10 O -0.626 6.626 11 C 0.054 3.946 12 C -0.206 4.206 13 C -0.060 4.060 14 C -0.233 4.233 15 C 0.089 3.911 16 O -0.147 6.147 17 C -0.477 4.477 18 H 0.116 0.884 19 C -0.180 4.180 20 N -0.551 5.551 21 Si 0.779 3.221 22 H -0.190 1.190 23 H -0.188 1.188 24 H -0.195 1.195 25 C -0.208 4.208 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.180 0.820 35 H 0.193 0.807 36 H 0.203 0.797 37 H 0.198 0.802 38 H 0.152 0.848 39 H 0.096 0.904 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.960 -10.537 17.568 23.722 hybrid contribution 0.135 0.755 -0.376 0.854 sum -11.825 -9.782 17.192 23.045 Atomic orbital electron populations 1.21902 0.95257 1.02513 1.02203 1.21538 0.96339 0.93027 1.03745 1.21030 0.89222 1.00751 0.99642 0.90401 1.22443 1.04194 1.00736 0.97286 1.30741 1.07503 1.21584 1.15191 1.05855 0.72870 0.79914 0.73488 1.93563 1.82871 1.72192 1.47208 1.93647 1.81425 1.77950 1.45615 1.85601 1.50238 1.86457 1.40354 1.17712 1.04660 0.93248 0.79030 1.21459 1.07126 0.91765 1.00236 1.21218 0.93538 1.01055 0.90156 1.21681 1.07009 0.91980 1.02611 1.19129 0.94282 0.90113 0.87589 1.83547 1.72838 1.35179 1.23160 1.20817 1.40487 0.95269 0.91175 0.88403 1.25125 0.94959 1.04004 0.93890 1.69692 1.40809 1.37957 1.06620 0.85427 0.79543 0.78823 0.78318 1.18996 1.18806 1.19488 1.20296 1.08276 1.00475 0.91750 0.91883 0.93087 0.91529 0.90710 0.89882 0.89555 0.89876 0.93130 0.82020 0.80738 0.79725 0.80161 0.84819 0.90352 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.67 71.98 0.70 -0.99 16 2 C -0.11 -1.16 5.40 30.59 0.17 -0.99 16 3 C -0.09 -1.33 2.39 -10.79 -0.03 -1.35 16 4 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 5 C -0.19 -2.98 8.64 71.98 0.62 -2.36 16 6 C -0.62 -9.53 4.90 71.98 0.35 -9.18 16 7 S 2.58 72.47 4.82 -56.49 -0.27 72.20 16 8 O -0.96 -30.85 15.84 -118.57 -1.88 -32.73 16 9 O -0.99 -36.20 16.26 -118.57 -1.93 -38.13 16 10 O -0.67 -20.34 10.05 -61.57 -0.62 -20.96 16 11 C 0.09 3.14 4.80 22.49 0.11 3.25 16 12 C -0.19 -4.52 8.46 22.40 0.19 -4.33 16 13 C -0.04 -1.10 10.03 22.24 0.22 -0.88 16 14 C -0.21 -8.10 9.17 22.41 0.21 -7.89 16 15 C 0.14 6.36 6.64 22.56 0.15 6.51 16 16 O -0.24 -12.93 8.58 -22.79 -0.20 -13.13 16 17 C -0.40 -22.63 9.95 67.92 0.68 -21.95 16 18 H 0.10 5.51 5.43 -2.91 -0.02 5.50 16 19 C 0.02 1.15 5.49 84.83 0.47 1.61 16 20 N -0.91 -52.33 13.96 21.61 0.30 -52.03 16 21 Si 0.96 45.20 28.62 68.60 1.96 47.16 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 25 C -0.19 -7.82 8.99 22.48 0.20 -7.62 16 26 H 0.06 0.60 6.57 -2.39 -0.02 0.59 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 1.08 6.57 -2.38 -0.02 1.07 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.05 5.61 -2.39 -0.01 1.03 16 34 H 0.16 1.93 6.60 -2.39 -0.02 1.91 16 35 H 0.17 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.19 2.39 7.49 -2.91 -0.02 2.37 16 37 H 0.18 2.96 8.06 -2.91 -0.02 2.93 16 38 H 0.13 5.37 5.63 -2.91 -0.02 5.36 16 39 H 0.29 15.15 8.31 -92.70 -0.77 14.38 16 40 H 0.12 5.17 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -74.46 339.30 2.45 -72.01 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.05 Total: 11.80 kcal Atomic # 6 Polarization: -50.21 SS G_CDS: 4.03 Total: -46.18 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.30 Total: -52.03 kcal Atomic # 8 Polarization: -100.33 SS G_CDS: -4.62 Total: -104.95 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.96 Total: 47.16 kcal Atomic # 16 Polarization: 72.47 SS G_CDS: -0.27 Total: 72.20 kcal Total: -74.46 2.45 -72.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841565657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.229 kcal (2) G-P(sol) polarization free energy of solvation -74.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds