Wall clock time and date at job start Tue Mar 31 2020 10:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46915 * 2 1 4 4 C 1.53004 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47213 * 54.99665 * 4 3 2 6 6 C 1.52996 * 109.46974 * 175.00027 * 4 3 2 7 7 S 1.81403 * 109.46810 * 295.00013 * 4 3 2 8 8 O 1.42094 * 110.54558 * 72.52060 * 7 4 3 9 9 O 1.42100 * 110.54178 * 295.76320 * 7 4 3 10 10 O 1.52198 * 104.44601 * 184.14391 * 7 4 3 11 11 C 1.35903 * 114.00137 * 284.84286 * 10 7 4 12 12 C 1.38825 * 120.01678 * 274.32488 * 11 10 7 13 13 C 1.38194 * 120.07678 * 180.02562 * 12 11 10 14 14 C 1.38152 * 120.12217 * 359.74805 * 13 12 11 15 15 C 1.38890 * 120.04392 * 0.50338 * 14 13 12 16 16 O 1.35746 * 120.04362 * 179.77165 * 15 14 13 17 17 C 1.34835 * 116.99979 * 353.95330 * 16 15 14 18 18 H 1.07996 * 119.99571 * 5.03696 * 17 16 15 19 19 C 1.38652 * 119.99906 * 185.03789 * 17 16 15 20 20 N 1.31557 * 119.99977 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00145 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47171 * 89.99922 * 21 19 17 23 23 H 1.48498 * 109.47003 * 209.99975 * 21 19 17 24 24 H 1.48498 * 109.46858 * 329.99870 * 21 19 17 25 25 C 1.38570 * 120.02142 * 94.33974 * 11 10 7 26 26 H 1.09000 * 109.47425 * 59.99998 * 1 2 3 27 27 H 1.09002 * 109.46870 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46909 * 299.99501 * 1 2 3 29 29 H 1.09001 * 109.46909 * 240.00499 * 2 1 3 30 30 H 1.09000 * 109.47425 * 120.00002 * 2 1 3 31 31 H 1.08994 * 109.47225 * 60.00315 * 3 2 1 32 32 H 1.09000 * 109.47075 * 300.00216 * 3 2 1 33 33 H 1.09006 * 109.46800 * 304.91275 * 6 4 3 34 34 H 1.08995 * 109.47354 * 64.91353 * 6 4 3 35 35 H 1.08999 * 109.47005 * 184.91763 * 6 4 3 36 36 H 1.07996 * 119.96142 * 0.03759 * 12 11 10 37 37 H 1.07994 * 119.93831 * 179.97438 * 13 12 11 38 38 H 1.08007 * 119.97730 * 180.27863 * 14 13 12 39 39 H 0.96996 * 120.00114 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.06133 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8426 6 6 4.0799 2.8796 -0.1264 7 16 4.1753 0.7196 1.5491 8 8 3.9647 -0.6856 1.5594 9 8 3.7966 1.5254 2.6566 10 8 5.6878 0.8719 1.4739 11 6 6.2905 -0.0062 0.6297 12 6 6.6412 -1.2721 1.0788 13 6 7.2547 -2.1657 0.2217 14 6 7.5160 -1.8043 -1.0859 15 6 7.1720 -0.5373 -1.5391 16 8 7.4330 -0.1806 -2.8226 17 6 8.1390 -1.0537 -3.5691 18 1 8.3993 -2.0213 -3.1664 19 6 8.5306 -0.7091 -4.8538 20 7 9.2199 -1.5608 -5.5820 21 14 8.0797 0.9644 -5.5506 22 1 9.1523 1.9398 -5.2291 23 1 7.9287 0.8625 -7.0243 24 1 6.7996 1.4210 -4.9522 25 6 6.5556 0.3616 -0.6797 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.6460 3.3428 -1.0126 34 1 3.7906 3.4466 0.7585 35 1 5.1663 2.8733 -0.2147 36 1 6.4343 -1.5588 2.0993 37 1 7.5269 -3.1498 0.5735 38 1 7.9915 -2.5062 -1.7551 39 1 9.4942 -1.3197 -6.4806 40 1 6.2840 1.3463 -1.0307 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845944442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:49 Heat of formation + Delta-G solvation = -137.572580 kcal Electronic energy + Delta-G solvation = -24956.831911 eV Core-core repulsion = 21250.461748 eV Total energy + Delta-G solvation = -3706.370163 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.16531 -40.53214 -38.46806 -37.79359 -37.61816 -37.24900 -34.49303 -33.30236 -31.78947 -30.68015 -27.80878 -27.37297 -24.63469 -23.91935 -23.55156 -22.45379 -21.54627 -20.00368 -19.46171 -19.20488 -18.55228 -17.83069 -17.08727 -17.01521 -16.22416 -16.05818 -15.88480 -15.71563 -15.40388 -14.94894 -14.68926 -14.63849 -14.33401 -14.29930 -14.02254 -13.76640 -13.66178 -13.45850 -13.34596 -13.09230 -13.04269 -13.00908 -12.73392 -12.56088 -12.52047 -12.16362 -11.99393 -11.81668 -11.75247 -11.45572 -11.24990 -10.94150 -10.02908 -9.33960 -8.51558 -6.26105 -1.07991 0.10453 0.40020 0.95593 1.34955 1.37476 1.52747 2.26996 2.43620 2.51132 2.81691 2.90134 3.03763 3.35105 3.42563 3.79474 3.89591 3.98858 4.06321 4.15110 4.16234 4.20022 4.39721 4.44679 4.54281 4.58816 4.66279 4.78061 4.80567 4.89563 5.00507 5.09122 5.10896 5.18243 5.20323 5.23724 5.36476 5.45001 5.63641 5.72437 6.00852 6.81415 7.46834 8.58736 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.004488 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.600876 B = 6236.819849 C = 6936.124498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.166 4.166 3 C -0.104 4.104 4 C -0.597 4.597 5 H 0.147 0.853 6 C -0.149 4.149 7 S 2.591 3.409 8 O -0.968 6.968 9 O -0.959 6.959 10 O -0.664 6.664 11 C 0.094 3.906 12 C -0.166 4.166 13 C -0.051 4.051 14 C -0.209 4.209 15 C 0.144 3.856 16 O -0.229 6.229 17 C -0.403 4.403 18 H 0.092 0.908 19 C 0.017 3.983 20 N -0.915 5.915 21 Si 0.963 3.037 22 H -0.267 1.267 23 H -0.271 1.271 24 H -0.256 1.256 25 C -0.195 4.195 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.148 0.852 37 H 0.166 0.834 38 H 0.133 0.867 39 H 0.286 0.714 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.056 6.161 9.920 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.204 4.204 3 C -0.142 4.142 4 C -0.708 4.708 5 H 0.165 0.835 6 C -0.207 4.207 7 S 2.690 3.310 8 O -0.966 6.966 9 O -0.957 6.957 10 O -0.623 6.623 11 C 0.053 3.947 12 C -0.186 4.186 13 C -0.069 4.069 14 C -0.229 4.229 15 C 0.094 3.906 16 O -0.135 6.135 17 C -0.479 4.479 18 H 0.109 0.891 19 C -0.183 4.183 20 N -0.555 5.555 21 Si 0.785 3.215 22 H -0.192 1.192 23 H -0.196 1.196 24 H -0.179 1.179 25 C -0.216 4.216 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.166 0.834 37 H 0.183 0.817 38 H 0.151 0.849 39 H 0.096 0.904 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.911 6.156 10.384 17.675 hybrid contribution 0.197 0.383 -0.964 1.056 sum -12.713 6.539 9.420 17.121 Atomic orbital electron populations 1.21744 0.93298 1.02696 1.02955 1.22057 0.98849 0.96176 1.03297 1.21594 0.87715 0.98444 1.06473 1.30489 1.08472 1.10607 1.21220 0.83489 1.21790 1.02327 0.90490 1.06087 1.05689 0.73013 0.74554 0.77787 1.93606 1.83415 1.31974 1.87620 1.93558 1.80532 1.71599 1.50025 1.85584 1.45717 1.64300 1.66741 1.17596 1.02166 0.88005 0.86928 1.21265 1.03067 0.92162 1.02156 1.21091 0.94489 1.00055 0.91227 1.21653 1.06165 0.97005 0.98103 1.19000 0.94219 0.93067 0.84341 1.83514 1.66026 1.45290 1.18717 1.20751 1.32458 0.97707 0.96949 0.89077 1.25217 0.95083 1.02633 0.95336 1.69709 1.36905 1.37447 1.11409 0.85327 0.80028 0.78454 0.77711 1.19194 1.19552 1.17947 1.20273 1.08665 1.01450 0.91217 0.91141 0.92047 0.91809 0.90868 0.92334 0.89422 0.86759 0.87706 0.89962 0.90943 0.83442 0.81666 0.84893 0.90428 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.63 16 2 C -0.17 -3.37 5.64 30.60 0.17 -3.19 16 3 C -0.10 -1.86 4.68 30.60 0.14 -1.72 16 4 C -0.60 -13.01 2.48 30.59 0.08 -12.94 16 5 H 0.15 3.24 7.28 -2.39 -0.02 3.22 16 6 C -0.15 -2.74 9.01 71.98 0.65 -2.09 16 7 S 2.59 74.61 4.15 -56.49 -0.23 74.37 16 8 O -0.97 -31.36 14.10 -118.57 -1.67 -33.04 16 9 O -0.96 -31.17 18.00 -118.57 -2.13 -33.31 16 10 O -0.66 -20.56 9.72 -61.55 -0.60 -21.15 16 11 C 0.09 3.14 4.86 22.49 0.11 3.25 16 12 C -0.17 -5.28 8.75 22.40 0.20 -5.09 16 13 C -0.05 -1.59 10.03 22.24 0.22 -1.37 16 14 C -0.21 -8.06 9.16 22.41 0.21 -7.85 16 15 C 0.14 6.00 6.64 22.56 0.15 6.15 16 16 O -0.23 -11.05 8.58 -22.75 -0.20 -11.25 16 17 C -0.40 -21.48 9.95 67.92 0.68 -20.81 16 18 H 0.09 5.02 5.44 -2.91 -0.02 5.00 16 19 C 0.02 0.92 5.49 84.83 0.47 1.38 16 20 N -0.92 -51.09 13.96 21.61 0.30 -50.79 16 21 Si 0.96 41.59 28.62 68.60 1.96 43.55 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 25 C -0.20 -6.85 8.67 22.48 0.19 -6.65 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.38 5.81 -2.39 -0.01 1.37 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.08 1.39 8.07 -2.39 -0.02 1.37 16 35 H 0.07 1.37 6.74 -2.39 -0.02 1.36 16 36 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 37 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.13 5.43 5.64 -2.91 -0.02 5.41 16 39 H 0.29 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.15 4.66 6.77 -2.91 -0.02 4.64 16 Total: -1.00 -64.73 340.88 2.45 -62.27 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 1.05 Total: 21.91 kcal Atomic # 6 Polarization: -56.54 SS G_CDS: 3.97 Total: -52.57 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.30 Total: -50.79 kcal Atomic # 8 Polarization: -94.15 SS G_CDS: -4.60 Total: -98.75 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.96 Total: 43.55 kcal Atomic # 16 Polarization: 74.61 SS G_CDS: -0.23 Total: 74.37 kcal Total: -64.73 2.45 -62.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845944442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.298 kcal (2) G-P(sol) polarization free energy of solvation -64.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds