Wall clock time and date at job start Tue Mar 31 2020 10:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47002 * 2 1 4 4 C 1.53001 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47361 * 304.99942 * 4 3 2 6 6 C 1.53003 * 109.47379 * 184.99946 * 4 3 2 7 7 S 1.81398 * 109.47304 * 64.99992 * 4 3 2 8 8 O 1.42098 * 110.54458 * 68.37271 * 7 4 3 9 9 O 1.42105 * 110.54246 * 291.62323 * 7 4 3 10 10 O 1.52204 * 104.45348 * 180.02562 * 7 4 3 11 11 C 1.35899 * 114.00039 * 74.99381 * 10 7 4 12 12 C 1.38830 * 120.01591 * 90.00466 * 11 10 7 13 13 C 1.38187 * 120.07778 * 180.29471 * 12 11 10 14 14 C 1.38156 * 120.12345 * 359.45082 * 13 12 11 15 15 C 1.38892 * 120.04072 * 0.54798 * 14 13 12 16 16 O 1.35751 * 120.04170 * 179.70518 * 15 14 13 17 17 C 1.34826 * 116.99935 * 354.48303 * 16 15 14 18 18 H 1.07998 * 120.00134 * 5.05930 * 17 16 15 19 19 C 1.38660 * 120.00009 * 185.06115 * 17 16 15 20 20 N 1.31559 * 119.99980 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47202 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47297 * 119.99944 * 21 19 17 24 24 H 1.48496 * 109.47029 * 239.99893 * 21 19 17 25 25 C 1.38566 * 120.02293 * 270.02702 * 11 10 7 26 26 H 1.09002 * 109.46960 * 300.00137 * 1 2 3 27 27 H 1.09000 * 109.47262 * 60.00234 * 1 2 3 28 28 H 1.09002 * 109.47246 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46960 * 239.99862 * 2 1 3 30 30 H 1.09000 * 109.46747 * 119.99875 * 2 1 3 31 31 H 1.09002 * 109.47375 * 60.00117 * 3 2 1 32 32 H 1.09000 * 109.47267 * 299.99556 * 3 2 1 33 33 H 1.08998 * 109.46604 * 300.00058 * 6 4 3 34 34 H 1.09004 * 109.47036 * 59.99800 * 6 4 3 35 35 H 1.08994 * 109.47313 * 179.97438 * 6 4 3 36 36 H 1.07992 * 119.96270 * 0.02562 * 12 11 10 37 37 H 1.08000 * 119.93897 * 179.70345 * 13 12 11 38 38 H 1.08002 * 119.98303 * 180.27756 * 14 13 12 39 39 H 0.96998 * 120.00340 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.06186 * 359.95673 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0800 2.8795 0.1264 7 16 4.1753 0.7194 -1.5490 8 8 3.8797 1.5725 -2.6462 9 8 3.8793 -0.6695 -1.6003 10 8 5.6915 0.7751 -1.4274 11 6 6.2131 -0.1561 -0.5862 12 6 6.5817 -1.4029 -1.0731 13 6 7.1066 -2.3529 -0.2178 14 6 7.2768 -2.0612 1.1219 15 6 6.9099 -0.8155 1.6144 16 8 7.0716 -0.5310 2.9319 17 6 7.4856 -1.5366 3.7289 18 1 7.7511 -2.4914 3.2998 19 6 7.5705 -1.3448 5.0995 20 7 7.2475 -0.1815 5.6222 21 14 8.1448 -2.7378 6.2037 22 1 8.4459 -3.9334 5.3761 23 1 9.3687 -2.3190 6.9329 24 1 7.0758 -3.0685 7.1798 25 6 6.3771 0.1381 0.7579 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7170 3.4687 -0.7157 34 1 3.7162 3.3140 1.0575 35 1 5.1699 2.8794 0.1273 36 1 6.4539 -1.6322 -2.1206 37 1 7.3880 -3.3238 -0.5980 38 1 7.6914 -2.8039 1.7875 39 1 7.3073 -0.0472 6.5810 40 1 6.0913 1.1076 1.1383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845944443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:53 Heat of formation + Delta-G solvation = -121.968659 kcal Electronic energy + Delta-G solvation = -24959.185693 eV Core-core repulsion = 21253.492167 eV Total energy + Delta-G solvation = -3705.693526 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.67301 -38.75225 -37.11306 -36.63273 -36.09605 -35.90492 -32.51342 -32.33119 -30.17065 -28.94615 -26.91716 -25.61160 -23.24182 -22.69506 -22.05661 -21.46138 -20.18231 -18.48176 -17.95761 -17.49285 -17.21918 -16.32175 -15.62364 -15.31809 -14.90124 -14.74376 -14.38957 -14.35114 -13.90224 -13.64113 -13.58994 -13.21806 -13.18427 -12.80041 -12.65211 -12.32744 -12.25591 -12.17477 -11.96567 -11.82393 -11.75362 -11.44886 -11.40793 -11.18054 -11.00655 -10.93207 -10.85190 -10.77926 -10.56700 -10.12994 -9.63521 -9.05278 -8.49770 -7.58321 -6.65095 -4.25217 0.23102 1.62622 2.01327 2.34736 3.01403 3.03653 3.09220 3.71047 3.80944 4.07202 4.17767 4.37334 4.51881 4.84038 4.86197 4.91677 5.06168 5.16172 5.26386 5.31731 5.41892 5.50953 5.58575 5.59867 5.67688 5.68982 5.74800 5.80141 5.92474 6.00217 6.02645 6.10784 6.24845 6.29170 6.51118 6.64818 6.77050 7.02125 7.12444 7.41505 7.77579 8.79581 9.42252 10.51856 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.004284 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.848723 B = 6534.362813 C = 7215.238745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.161 4.161 3 C -0.100 4.100 4 C -0.615 4.615 5 H 0.148 0.852 6 C -0.139 4.139 7 S 2.597 3.403 8 O -0.940 6.940 9 O -0.947 6.947 10 O -0.662 6.662 11 C 0.102 3.898 12 C -0.181 4.181 13 C -0.057 4.057 14 C -0.214 4.214 15 C 0.164 3.836 16 O -0.167 6.167 17 C -0.396 4.396 18 H 0.097 0.903 19 C 0.043 3.957 20 N -0.856 5.856 21 Si 0.944 3.056 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.208 4.208 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.139 0.861 39 H 0.273 0.727 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 0.736 -8.227 10.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.198 4.198 3 C -0.139 4.139 4 C -0.723 4.723 5 H 0.166 0.834 6 C -0.197 4.197 7 S 2.693 3.307 8 O -0.938 6.938 9 O -0.945 6.945 10 O -0.622 6.622 11 C 0.061 3.939 12 C -0.202 4.202 13 C -0.076 4.076 14 C -0.234 4.234 15 C 0.109 3.891 16 O -0.069 6.069 17 C -0.472 4.472 18 H 0.114 0.886 19 C -0.163 4.163 20 N -0.489 5.489 21 Si 0.768 3.232 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.229 4.229 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.083 0.917 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.138 0.939 -8.602 11.217 hybrid contribution 0.152 -0.288 1.155 1.200 sum -6.987 0.651 -7.446 10.232 Atomic orbital electron populations 1.21722 0.95037 1.02087 1.01771 1.22033 0.97132 0.95925 1.04723 1.21428 0.89339 0.98529 1.04554 1.30653 1.07087 1.09966 1.24547 0.83428 1.21598 1.02060 0.91493 1.04565 1.05575 0.73439 0.74948 0.76766 1.93578 1.82044 1.69430 1.48792 1.93622 1.82517 1.31761 1.86644 1.85603 1.46974 1.62125 1.67463 1.17545 1.03322 0.86474 0.86533 1.20686 1.06593 0.92390 1.00530 1.20674 0.96246 0.97997 0.92648 1.21420 1.07427 0.98379 0.96177 1.18853 0.92338 0.91838 0.86041 1.83974 1.73117 1.37588 1.12260 1.21443 1.45406 0.92653 0.87704 0.88561 1.25346 0.96547 0.98195 0.96222 1.70036 1.43414 1.22397 1.13067 0.85595 0.78569 0.79440 0.79552 1.18890 1.19981 1.19978 1.20133 1.10697 1.01357 0.90727 0.92559 0.92690 0.92240 0.90096 0.90377 0.89294 0.90708 0.90832 0.90016 0.90837 0.85824 0.85652 0.84379 0.91742 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.12 16 2 C -0.16 -1.97 5.62 -26.73 -0.15 -2.12 16 3 C -0.10 -1.16 4.68 -26.73 -0.13 -1.28 16 4 C -0.62 -8.25 2.31 -26.73 -0.06 -8.31 16 5 H 0.15 2.06 6.60 -51.92 -0.34 1.72 16 6 C -0.14 -1.66 8.97 37.16 0.33 -1.33 16 7 S 2.60 41.96 4.26 -107.50 -0.46 41.50 16 8 O -0.94 -16.69 17.98 -67.03 -1.21 -17.89 16 9 O -0.95 -16.78 14.01 -67.04 -0.94 -17.72 16 10 O -0.66 -11.50 9.79 -51.75 -0.51 -12.01 16 11 C 0.10 1.90 4.79 -39.24 -0.19 1.72 16 12 C -0.18 -3.22 9.04 -39.38 -0.36 -3.57 16 13 C -0.06 -0.98 10.03 -39.63 -0.40 -1.38 16 14 C -0.21 -4.20 9.17 -39.37 -0.36 -4.56 16 15 C 0.16 3.63 6.64 -39.13 -0.26 3.37 16 16 O -0.17 -4.35 9.76 0.06 0.00 -4.35 16 17 C -0.40 -10.18 9.49 30.89 0.29 -9.88 16 18 H 0.10 2.25 5.20 -52.49 -0.27 1.98 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -23.44 13.67 55.48 0.76 -22.68 16 21 Si 0.94 19.10 29.55 -169.99 -5.02 14.07 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 C -0.21 -4.09 8.40 -39.25 -0.33 -4.42 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.09 5.61 -51.93 -0.29 0.80 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.89 7.38 -51.93 -0.38 0.50 16 36 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.14 2.62 5.63 -52.49 -0.30 2.33 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.13 2.41 6.81 -52.49 -0.36 2.06 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -30.62 341.65 -8.86 -39.48 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.30 Total: 6.34 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: -1.33 Total: -31.89 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.76 Total: -22.68 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -2.65 Total: -51.98 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 16 Polarization: 41.96 SS G_CDS: -0.46 Total: 41.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.62 -8.86 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845944443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.487 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds