Wall clock time and date at job start Tue Mar 31 2020 10:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46956 * 2 1 4 4 C 1.35896 * 117.00196 * 180.02562 * 3 2 1 5 5 C 1.38797 * 120.02528 * 0.02562 * 4 3 2 6 6 C 1.38160 * 120.05555 * 179.97438 * 5 4 3 7 7 C 1.38198 * 120.10566 * 359.74743 * 6 5 4 8 8 C 1.38752 * 120.05608 * 0.50731 * 7 6 5 9 9 O 1.35899 * 120.02447 * 179.76855 * 8 7 6 10 10 S 1.52198 * 114.00040 * 269.72307 * 9 8 7 11 11 O 1.42105 * 104.27751 * 318.93045 * 10 9 8 12 12 O 1.42101 * 104.27671 * 191.07480 * 10 9 8 13 13 C 1.81395 * 104.44745 * 75.00388 * 10 9 8 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 9 15 15 C 1.53002 * 109.47213 * 180.02562 * 14 13 10 16 16 C 1.50704 * 109.47210 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00074 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00176 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99569 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47633 * 59.99712 * 20 18 16 22 22 H 1.48504 * 109.47025 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47285 * 299.99727 * 20 18 16 24 24 C 1.38611 * 120.03411 * 179.97438 * 4 3 2 25 25 H 1.08999 * 109.47276 * 300.00490 * 1 2 3 26 26 H 1.09001 * 109.47002 * 60.00089 * 1 2 3 27 27 H 1.08997 * 109.47087 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47247 * 239.99937 * 2 1 3 29 29 H 1.09005 * 109.47072 * 119.99160 * 2 1 3 30 30 H 1.08003 * 119.97404 * 0.02562 * 5 4 3 31 31 H 1.07997 * 119.94737 * 180.02562 * 6 5 4 32 32 H 1.08002 * 119.97055 * 180.25568 * 7 6 5 33 33 H 1.09003 * 109.47393 * 299.99560 * 13 10 9 34 34 H 1.08994 * 109.47678 * 60.00177 * 13 10 9 35 35 H 1.09004 * 109.47080 * 299.99725 * 14 13 10 36 36 H 1.09005 * 109.47285 * 59.99790 * 14 13 10 37 37 H 1.09003 * 109.47218 * 299.99466 * 15 14 13 38 38 H 1.08995 * 109.47220 * 59.99596 * 15 14 13 39 39 H 0.97002 * 119.99124 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.04913 * 0.04082 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 -0.0005 5 6 4.1996 0.4251 -0.0016 6 6 5.5693 0.6055 -0.0027 7 6 6.1005 1.8813 -0.0080 8 6 5.2589 2.9845 -0.0016 9 8 5.7820 4.2388 -0.0021 10 16 6.0213 4.8102 1.3881 11 8 4.8766 4.4147 2.1315 12 8 6.3070 6.1831 1.1582 13 6 7.4989 3.9439 1.9853 14 6 7.8454 4.4367 3.3917 15 6 9.0920 3.7064 3.8953 16 6 9.4337 4.1922 5.2804 17 1 8.8226 4.9461 5.7543 18 6 10.5259 3.6735 5.9430 19 7 11.2692 2.7544 5.3665 20 14 10.9490 4.2752 7.6600 21 1 9.8114 4.0020 8.5747 22 1 12.1583 3.5656 8.1492 23 1 11.2133 5.7361 7.6216 24 6 3.8840 2.8060 -0.0011 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.7868 -0.5729 -0.0024 31 1 6.2260 -0.2518 -0.0039 32 1 7.1716 2.0198 -0.0130 33 1 7.3047 2.8717 2.0141 34 1 8.3338 4.1441 1.3139 35 1 8.0395 5.5089 3.3635 36 1 7.0103 4.2361 4.0631 37 1 8.8984 2.6341 3.9236 38 1 9.9268 3.9073 3.2239 39 1 12.0373 2.3893 5.8329 40 1 3.2273 3.6634 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867665295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:15 Heat of formation + Delta-G solvation = -131.324968 kcal Electronic energy + Delta-G solvation = -23780.259633 eV Core-core repulsion = 20074.160387 eV Total energy + Delta-G solvation = -3706.099246 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.28765 -39.85776 -37.22096 -36.98779 -35.94036 -34.72731 -32.45696 -32.21236 -30.73850 -29.81078 -27.87800 -24.66956 -23.91078 -23.13613 -22.65481 -20.84453 -20.23408 -18.83876 -17.79638 -17.40255 -16.95635 -16.52815 -16.46242 -16.36286 -15.81158 -15.22731 -14.58375 -14.45849 -14.17987 -14.01058 -13.76862 -13.12339 -12.94219 -12.89516 -12.63340 -12.47138 -12.33606 -12.13059 -12.06099 -11.92338 -11.87322 -11.80086 -11.28719 -11.24396 -11.12161 -10.90657 -10.88991 -10.43669 -9.96735 -9.45894 -9.26765 -9.12802 -8.62373 -8.41398 -6.06754 -4.09755 0.08107 0.94001 1.01054 2.12267 2.81710 3.25707 3.31741 3.35513 3.38840 3.75919 4.10730 4.36624 4.41577 4.51615 4.52034 4.60414 4.73109 4.75123 4.83399 4.94749 5.07507 5.08917 5.17341 5.29720 5.36770 5.38720 5.62949 5.71535 5.79106 5.83572 5.92184 5.99132 6.23409 6.36600 6.40890 6.84428 7.00222 7.55138 7.65107 7.91119 8.31417 8.96099 9.54922 11.04488 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.003049 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.941976 B = 9181.748077 C = 9844.374521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.310 6.310 4 C 0.147 3.853 5 C -0.197 4.197 6 C -0.059 4.059 7 C -0.167 4.167 8 C 0.113 3.887 9 O -0.669 6.669 10 S 2.581 3.419 11 O -0.953 6.953 12 O -0.931 6.931 13 C -0.631 4.631 14 C -0.103 4.103 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.128 4.128 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.262 0.738 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 -8.613 -14.658 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.224 6.224 4 C 0.102 3.898 5 C -0.216 4.216 6 C -0.077 4.077 7 C -0.187 4.187 8 C 0.071 3.929 9 O -0.627 6.627 10 S 2.680 3.320 11 O -0.951 6.951 12 O -0.929 6.929 13 C -0.760 4.760 14 C -0.142 4.142 15 C -0.007 4.007 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.149 4.149 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.741 -7.991 -14.860 24.483 hybrid contribution 1.086 -0.169 1.052 1.521 sum -16.655 -8.160 -13.808 23.122 Atomic orbital electron populations 1.21785 0.92490 1.02976 1.03766 1.22876 0.96155 0.81556 1.01705 1.86098 1.18274 1.29761 1.88276 1.18542 0.82886 0.92930 0.95476 1.21453 0.94355 0.98477 1.07312 1.20834 0.94485 0.96533 0.95836 1.21371 1.00925 0.91531 1.04848 1.17596 0.91356 0.79283 1.04630 1.85741 1.82254 1.36160 1.58580 1.05890 0.77507 0.75697 0.72902 1.93630 1.46821 1.83221 1.71447 1.93613 1.86377 1.30505 1.82419 1.30810 1.19866 1.14418 1.10917 1.21497 1.02961 1.01163 0.88621 1.19065 0.90260 0.95439 0.95968 1.21212 1.11716 1.22875 1.00704 0.92389 1.25014 0.96156 0.94968 0.98211 1.69949 1.17426 1.28088 1.37997 0.86608 0.77796 0.79016 0.84317 1.20123 1.21251 1.20094 1.20374 0.93442 0.96820 1.04231 0.91267 0.91455 0.90218 0.91763 0.91546 0.84419 0.83858 0.83574 0.85050 0.84710 0.91382 0.91373 0.96068 0.96042 0.92838 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.05 0.35 5.46 37.16 0.20 0.55 16 3 O -0.31 -3.27 10.13 -19.41 -0.20 -3.47 16 4 C 0.15 1.68 6.68 -39.24 -0.26 1.42 16 5 C -0.20 -1.80 9.04 -39.40 -0.36 -2.15 16 6 C -0.06 -0.54 10.04 -39.62 -0.40 -0.93 16 7 C -0.17 -1.85 8.46 -39.41 -0.33 -2.18 16 8 C 0.11 1.53 4.79 -39.24 -0.19 1.34 16 9 O -0.67 -9.75 10.05 -51.75 -0.52 -10.27 16 10 S 2.58 42.01 5.17 -107.50 -0.56 41.46 16 11 O -0.95 -17.16 16.26 -67.04 -1.09 -18.25 16 12 O -0.93 -17.83 18.09 -67.04 -1.21 -19.04 16 13 C -0.63 -10.00 5.47 37.16 0.20 -9.80 16 14 C -0.10 -2.10 5.16 -26.73 -0.14 -2.23 16 15 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 16 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 20 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.13 -1.70 8.99 -39.29 -0.35 -2.05 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.07 0.38 7.66 -51.93 -0.40 -0.01 16 30 H 0.14 0.85 6.29 -52.48 -0.33 0.52 16 31 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.15 1.35 7.52 -52.49 -0.39 0.95 16 33 H 0.13 1.83 6.62 -51.92 -0.34 1.49 16 34 H 0.13 1.88 8.14 -51.93 -0.42 1.45 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -35.24 350.82 -10.00 -45.24 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.63 Total: -2.40 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: -1.79 Total: -29.36 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -3.02 Total: -51.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 42.01 SS G_CDS: -0.56 Total: 41.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.24 -10.00 -45.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867665295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.087 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds