Wall clock time and date at job start Tue Mar 31 2020 10:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46956 * 2 1 4 4 C 1.35896 * 117.00196 * 180.02562 * 3 2 1 5 5 C 1.38797 * 120.02528 * 0.02562 * 4 3 2 6 6 C 1.38160 * 120.05555 * 179.97438 * 5 4 3 7 7 C 1.38198 * 120.10566 * 359.74743 * 6 5 4 8 8 C 1.38752 * 120.05608 * 0.50731 * 7 6 5 9 9 O 1.35899 * 120.02447 * 179.76855 * 8 7 6 10 10 S 1.52198 * 114.00040 * 269.72307 * 9 8 7 11 11 O 1.42105 * 104.27751 * 318.93045 * 10 9 8 12 12 O 1.42101 * 104.27671 * 191.07480 * 10 9 8 13 13 C 1.81395 * 104.44745 * 75.00388 * 10 9 8 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 9 15 15 C 1.53002 * 109.47213 * 180.02562 * 14 13 10 16 16 C 1.50704 * 109.47210 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00074 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00176 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99569 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47633 * 59.99712 * 20 18 16 22 22 H 1.48504 * 109.47025 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47285 * 299.99727 * 20 18 16 24 24 C 1.38611 * 120.03411 * 179.97438 * 4 3 2 25 25 H 1.08999 * 109.47276 * 300.00490 * 1 2 3 26 26 H 1.09001 * 109.47002 * 60.00089 * 1 2 3 27 27 H 1.08997 * 109.47087 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47247 * 239.99937 * 2 1 3 29 29 H 1.09005 * 109.47072 * 119.99160 * 2 1 3 30 30 H 1.08003 * 119.97404 * 0.02562 * 5 4 3 31 31 H 1.07997 * 119.94737 * 180.02562 * 6 5 4 32 32 H 1.08002 * 119.97055 * 180.25568 * 7 6 5 33 33 H 1.09003 * 109.47393 * 299.99560 * 13 10 9 34 34 H 1.08994 * 109.47678 * 60.00177 * 13 10 9 35 35 H 1.09004 * 109.47080 * 299.99725 * 14 13 10 36 36 H 1.09005 * 109.47285 * 59.99790 * 14 13 10 37 37 H 1.09003 * 109.47218 * 299.99466 * 15 14 13 38 38 H 1.08995 * 109.47220 * 59.99596 * 15 14 13 39 39 H 0.97002 * 119.99124 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.04913 * 0.04082 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 -0.0005 5 6 4.1996 0.4251 -0.0016 6 6 5.5693 0.6055 -0.0027 7 6 6.1005 1.8813 -0.0080 8 6 5.2589 2.9845 -0.0016 9 8 5.7820 4.2388 -0.0021 10 16 6.0213 4.8102 1.3881 11 8 4.8766 4.4147 2.1315 12 8 6.3070 6.1831 1.1582 13 6 7.4989 3.9439 1.9853 14 6 7.8454 4.4367 3.3917 15 6 9.0920 3.7064 3.8953 16 6 9.4337 4.1922 5.2804 17 1 8.8226 4.9461 5.7543 18 6 10.5259 3.6735 5.9430 19 7 11.2692 2.7544 5.3665 20 14 10.9490 4.2752 7.6600 21 1 9.8114 4.0020 8.5747 22 1 12.1583 3.5656 8.1492 23 1 11.2133 5.7361 7.6216 24 6 3.8840 2.8060 -0.0011 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.7868 -0.5729 -0.0024 31 1 6.2260 -0.2518 -0.0039 32 1 7.1716 2.0198 -0.0130 33 1 7.3047 2.8717 2.0141 34 1 8.3338 4.1441 1.3139 35 1 8.0395 5.5089 3.3635 36 1 7.0103 4.2361 4.0631 37 1 8.8984 2.6341 3.9236 38 1 9.9268 3.9073 3.2239 39 1 12.0373 2.3893 5.8329 40 1 3.2273 3.6634 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867665295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:10 Heat of formation + Delta-G solvation = -154.658966 kcal Electronic energy + Delta-G solvation = -23781.271472 eV Core-core repulsion = 20074.160387 eV Total energy + Delta-G solvation = -3707.111084 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -42.27023 -40.68877 -38.44072 -37.96332 -37.32444 -36.50788 -34.20914 -32.99968 -31.53545 -30.62208 -29.68164 -25.80663 -25.33616 -23.96146 -23.55696 -22.37291 -21.36974 -19.85891 -19.06097 -18.74731 -18.14260 -17.92709 -17.28465 -17.07472 -16.99226 -16.58301 -16.41364 -15.74944 -15.27562 -14.81917 -14.56079 -14.47378 -14.14041 -13.95067 -13.90917 -13.61670 -13.41665 -13.39413 -13.34290 -13.16405 -13.01237 -12.87106 -12.73501 -12.70009 -12.55330 -12.18810 -11.93845 -11.76617 -11.66389 -11.38133 -11.08062 -10.55697 -10.12167 -9.42236 -8.21713 -6.32158 -1.13247 -0.00330 0.19837 0.98494 1.41305 1.43452 1.51348 2.11811 2.39835 2.43952 2.48215 2.88336 3.12100 3.55393 3.64401 3.72857 3.84320 3.88947 4.00351 4.09205 4.15077 4.25522 4.30783 4.36047 4.41173 4.61187 4.84818 4.86722 4.89938 4.96403 4.97299 5.04971 5.11329 5.20852 5.27661 5.46156 5.56449 5.63949 5.80242 6.20592 6.30635 6.82764 7.36841 8.89562 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.003049 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.941976 B = 9181.748077 C = 9844.374521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.040 3.960 3 O -0.331 6.331 4 C 0.138 3.862 5 C -0.184 4.184 6 C -0.053 4.053 7 C -0.173 4.173 8 C 0.079 3.921 9 O -0.664 6.664 10 S 2.604 3.396 11 O -0.974 6.974 12 O -0.966 6.966 13 C -0.624 4.624 14 C -0.104 4.104 15 C 0.032 3.968 16 C -0.553 4.553 17 H 0.059 0.941 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.961 3.039 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.269 1.269 24 C -0.157 4.157 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.173 0.827 31 H 0.181 0.819 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.008 0.992 38 H 0.005 0.995 39 H 0.265 0.735 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.367 -10.609 -14.682 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.034 4.034 3 O -0.245 6.245 4 C 0.092 3.908 5 C -0.203 4.203 6 C -0.071 4.071 7 C -0.193 4.193 8 C 0.038 3.962 9 O -0.623 6.623 10 S 2.704 3.296 11 O -0.973 6.973 12 O -0.964 6.964 13 C -0.754 4.754 14 C -0.143 4.143 15 C -0.006 4.006 16 C -0.591 4.591 17 H 0.078 0.922 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.786 3.214 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.194 1.194 24 C -0.178 4.178 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.191 0.809 31 H 0.198 0.802 32 H 0.182 0.818 33 H 0.171 0.829 34 H 0.174 0.826 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.026 0.974 38 H 0.023 0.977 39 H 0.074 0.926 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.924 -9.971 -14.881 25.341 hybrid contribution 1.047 0.308 0.975 1.463 sum -16.877 -9.663 -13.907 23.908 Atomic orbital electron populations 1.21831 0.91733 1.04334 1.03042 1.23236 0.96875 0.80068 1.03195 1.86090 1.17948 1.32318 1.88174 1.18686 0.83707 0.92880 0.95503 1.21891 0.94239 0.99302 1.04905 1.21337 0.95036 0.96777 0.93961 1.21730 1.01678 0.91585 1.04297 1.17987 0.91953 0.79112 1.07186 1.85699 1.82324 1.37338 1.56946 1.05129 0.76944 0.74802 0.72735 1.93590 1.47909 1.83330 1.72448 1.93562 1.86749 1.32858 1.83217 1.30701 1.20462 1.15627 1.08572 1.21323 1.00924 1.00784 0.91239 1.18960 0.91787 0.95060 0.94803 1.21701 1.12074 1.23079 1.02258 0.92227 1.25894 0.96056 0.95078 1.02358 1.70056 1.17918 1.29145 1.39690 0.85562 0.77803 0.78694 0.79388 1.19259 1.20605 1.19391 1.20495 0.93629 0.97711 1.05972 0.92344 0.91864 0.87770 0.89727 0.90403 0.80933 0.80172 0.81836 0.82866 0.82596 0.91376 0.91145 0.97369 0.97654 0.92613 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 71.98 0.74 -0.61 16 2 C 0.04 0.45 5.46 71.98 0.39 0.84 16 3 O -0.33 -6.74 10.13 -92.38 -0.94 -7.67 16 4 C 0.14 3.01 6.68 22.49 0.15 3.16 16 5 C -0.18 -2.80 9.04 22.39 0.20 -2.60 16 6 C -0.05 -0.79 10.04 22.24 0.22 -0.57 16 7 C -0.17 -3.48 8.46 22.38 0.19 -3.29 16 8 C 0.08 2.10 4.79 22.49 0.11 2.21 16 9 O -0.66 -19.47 10.05 -61.51 -0.62 -20.09 16 10 S 2.60 85.23 5.17 -56.49 -0.29 84.94 16 11 O -0.97 -35.69 16.26 -118.57 -1.93 -37.62 16 12 O -0.97 -37.61 18.09 -118.57 -2.15 -39.75 16 13 C -0.62 -19.24 5.47 71.98 0.39 -18.84 16 14 C -0.10 -4.19 5.16 30.59 0.16 -4.04 16 15 C 0.03 1.63 4.97 29.85 0.15 1.78 16 16 C -0.55 -31.13 9.11 25.60 0.23 -30.90 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.00 0.26 5.46 84.65 0.46 0.72 16 19 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 20 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.16 -4.24 8.99 22.46 0.20 -4.03 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.08 0.59 7.66 -2.39 -0.02 0.57 16 29 H 0.08 0.68 7.66 -2.38 -0.02 0.66 16 30 H 0.17 1.33 6.29 -2.91 -0.02 1.32 16 31 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.16 2.59 7.52 -2.91 -0.02 2.57 16 33 H 0.15 4.03 6.62 -2.39 -0.02 4.01 16 34 H 0.16 4.13 8.14 -2.39 -0.02 4.11 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -76.99 350.82 1.03 -75.97 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.03 Total: 9.14 kcal Atomic # 6 Polarization: -59.78 SS G_CDS: 3.60 Total: -56.17 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.28 Total: -54.58 kcal Atomic # 8 Polarization: -99.51 SS G_CDS: -5.63 Total: -105.14 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 85.23 SS G_CDS: -0.29 Total: 84.94 kcal Total: -76.99 1.03 -75.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867665295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.694 kcal (2) G-P(sol) polarization free energy of solvation -76.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds