Wall clock time and date at job start Tue Mar 31 2020 10:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42109 * 108.57199 * 2 1 4 4 O 1.42099 * 108.57817 * 228.97602 * 2 1 3 5 5 C 1.81400 * 101.92244 * 114.48409 * 2 1 3 6 6 C 1.52995 * 109.46984 * 179.97438 * 5 2 1 7 7 C 1.52999 * 109.47458 * 180.02562 * 6 5 2 8 8 C 1.52995 * 109.47458 * 179.97438 * 7 6 5 9 9 O 1.42907 * 109.47187 * 180.02562 * 8 7 6 10 10 C 1.35900 * 117.00011 * 180.02562 * 9 8 7 11 11 C 1.38827 * 120.02115 * 359.72410 * 10 9 8 12 12 C 1.38189 * 120.07765 * 179.72294 * 11 10 9 13 13 C 1.38149 * 120.12438 * 0.55361 * 12 11 10 14 14 C 1.38890 * 120.03979 * 359.72018 * 13 12 11 15 15 O 1.35754 * 120.03567 * 179.97438 * 14 13 12 16 16 C 1.34836 * 116.99505 * 174.48878 * 15 14 13 17 17 H 1.08001 * 120.00214 * 5.05661 * 16 15 14 18 18 C 1.38659 * 119.99788 * 185.05604 * 16 15 14 19 19 N 1.31554 * 119.99670 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99953 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46852 * 60.00312 * 20 18 16 22 22 H 1.48502 * 109.47190 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47269 * 300.00367 * 20 18 16 24 24 C 1.38571 * 120.01894 * 179.97438 * 10 9 8 25 25 H 1.09003 * 109.47094 * 305.50797 * 1 2 3 26 26 H 1.08995 * 109.47614 * 65.51254 * 1 2 3 27 27 H 1.08997 * 109.46511 * 185.51621 * 1 2 3 28 28 H 1.09002 * 109.46821 * 60.00780 * 5 2 1 29 29 H 1.08996 * 109.47302 * 300.00149 * 5 2 1 30 30 H 1.09002 * 109.47372 * 60.00525 * 6 5 2 31 31 H 1.09005 * 109.47356 * 300.00394 * 6 5 2 32 32 H 1.09002 * 109.47124 * 60.00048 * 7 6 5 33 33 H 1.09005 * 109.46887 * 300.00348 * 7 6 5 34 34 H 1.09002 * 109.47372 * 60.00192 * 8 7 6 35 35 H 1.08996 * 109.47272 * 299.99894 * 8 7 6 36 36 H 1.08005 * 119.95663 * 359.97438 * 11 10 9 37 37 H 1.08008 * 119.93521 * 180.25076 * 12 11 10 38 38 H 1.08003 * 119.97608 * 179.69786 * 13 12 11 39 39 H 0.97005 * 119.99481 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.06077 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3471 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7356 1.6153 6 6 3.7055 -0.8194 1.7979 7 6 4.0217 -1.4404 3.1600 8 6 5.5384 -1.5249 3.3423 9 8 5.8337 -2.1055 4.6143 10 6 7.1459 -2.2526 4.9357 11 6 8.1292 -1.8513 4.0416 12 6 9.4639 -1.9951 4.3696 13 6 9.8239 -2.5489 5.5829 14 6 8.8444 -2.9573 6.4788 15 8 9.1983 -3.5020 7.6709 16 6 8.2033 -3.7714 8.5402 17 1 7.1744 -3.6301 8.2440 18 6 8.5013 -4.2299 9.8144 19 7 9.7547 -4.4015 10.1753 20 14 7.1230 -4.6025 11.0189 21 1 6.2441 -5.6579 10.4543 22 1 7.7016 -5.0740 12.3028 23 1 6.3278 -3.3713 11.2574 24 6 7.5032 -2.8081 6.1539 25 1 -0.3633 0.5969 0.8366 26 1 -0.3634 0.4259 -0.9352 27 1 -0.3632 -1.0229 0.0988 28 1 1.7612 -1.7369 1.6664 29 1 1.7611 -0.1170 2.4042 30 1 4.1336 0.1817 1.7465 31 1 4.1329 -1.4383 1.0088 32 1 3.5937 -2.4416 3.2110 33 1 3.5943 -0.8219 3.9493 34 1 5.9668 -0.5239 3.2912 35 1 5.9654 -2.1436 2.5531 36 1 7.8506 -1.4225 3.0903 37 1 10.2270 -1.6784 3.6739 38 1 10.8678 -2.6647 5.8347 39 1 9.9631 -4.7219 11.0668 40 1 6.7396 -3.1242 6.8491 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882993814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:04 Heat of formation + Delta-G solvation = -118.919616 kcal Electronic energy + Delta-G solvation = -22636.240435 eV Core-core repulsion = 18930.679125 eV Total energy + Delta-G solvation = -3705.561310 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.64342 -38.20084 -37.41193 -36.50052 -36.08656 -35.21771 -32.26770 -30.75081 -30.07769 -29.03103 -28.55142 -25.34966 -24.52626 -22.12062 -21.59796 -20.80857 -19.29746 -18.26361 -17.64850 -17.02961 -16.87777 -16.48711 -16.14047 -15.73032 -15.22835 -15.02847 -14.94337 -14.30571 -13.92044 -13.74576 -13.70805 -13.62667 -13.09762 -12.98313 -12.95791 -12.66983 -12.51023 -12.41735 -12.31184 -11.68711 -11.67300 -11.53044 -11.47951 -11.15822 -10.97636 -10.91053 -10.82582 -10.56339 -10.37608 -10.24594 -9.45155 -8.83735 -7.71702 -7.25748 -6.45967 -4.05418 -0.51380 2.21604 2.25460 2.33772 3.09711 3.13678 3.15148 3.17594 3.48559 3.51578 3.96833 4.11113 4.15073 4.26064 4.46339 4.55461 4.70451 4.79281 4.99938 5.08272 5.09903 5.17373 5.22763 5.25188 5.33197 5.39715 5.58346 5.77491 5.81666 5.89065 6.12796 6.27083 6.40676 6.66924 7.01768 7.08709 7.22931 7.41709 7.56272 7.99189 8.04620 8.99501 9.67491 10.71629 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.002148 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.349899 B =13031.265118 C =14137.138348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.420 3.580 3 O -0.939 6.939 4 O -0.939 6.939 5 C -0.609 4.609 6 C -0.110 4.110 7 C -0.111 4.111 8 C 0.059 3.941 9 O -0.320 6.320 10 C 0.166 3.834 11 C -0.297 4.297 12 C -0.044 4.044 13 C -0.220 4.220 14 C 0.183 3.817 15 O -0.171 6.171 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.862 5.862 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.265 4.265 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.271 0.729 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.111 7.611 -17.331 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.602 3.398 3 O -0.936 6.936 4 O -0.936 6.936 5 C -0.738 4.738 6 C -0.148 4.148 7 C -0.150 4.150 8 C -0.017 4.017 9 O -0.235 6.235 10 C 0.121 3.879 11 C -0.317 4.317 12 C -0.062 4.062 13 C -0.240 4.240 14 C 0.128 3.872 15 O -0.074 6.074 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.285 4.285 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.370 7.713 -17.565 25.879 hybrid contribution -1.324 -0.390 1.046 1.732 sum -18.694 7.323 -16.518 25.999 Atomic orbital electron populations 1.30280 1.26950 1.11600 1.11827 1.07858 0.78255 0.75851 0.77788 1.93615 1.78957 1.34498 1.86541 1.93613 1.78952 1.67000 1.54049 1.30324 1.06112 1.14261 1.23060 1.21216 0.90714 1.03434 0.99479 1.21460 0.94698 1.02572 0.96262 1.22659 0.95755 0.98164 0.85077 1.85980 1.23554 1.78059 1.35874 1.18630 0.81355 0.94405 0.93464 1.20654 0.93456 1.16322 1.01255 1.20413 0.94875 0.95937 0.95007 1.20163 0.98439 1.09941 0.95434 1.19029 0.91296 0.89590 0.87236 1.84005 1.35531 1.67293 1.20530 1.21328 0.87318 1.45704 0.92574 0.88920 1.25304 0.97794 0.96568 0.96786 1.70034 1.17293 1.42114 1.20170 0.85765 0.79503 0.79169 0.78914 1.19453 1.20267 1.19453 1.20320 0.96741 1.13762 0.97708 0.85308 0.85263 0.85312 0.84689 0.84683 0.89699 0.89704 0.90379 0.90369 0.92072 0.92082 0.87068 0.86715 0.86344 0.91920 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.33 10.62 101.05 1.07 -0.25 16 2 S 2.42 13.01 5.36 -107.50 -0.58 12.43 16 3 O -0.94 -8.91 18.10 -57.83 -1.05 -9.96 16 4 O -0.94 -8.90 18.10 -57.83 -1.05 -9.95 16 5 C -0.61 -2.47 5.81 37.16 0.22 -2.25 16 6 C -0.11 -0.77 5.22 -26.73 -0.14 -0.91 16 7 C -0.11 -1.02 5.58 -26.73 -0.15 -1.16 16 8 C 0.06 0.73 4.74 37.16 0.18 0.91 16 9 O -0.32 -5.57 10.13 -19.43 -0.20 -5.77 16 10 C 0.17 3.31 6.68 -39.24 -0.26 3.05 16 11 C -0.30 -5.34 9.04 -39.38 -0.36 -5.69 16 12 C -0.04 -0.80 10.03 -39.63 -0.40 -1.20 16 13 C -0.22 -4.74 9.99 -39.37 -0.39 -5.13 16 14 C 0.18 4.53 6.64 -39.13 -0.26 4.27 16 15 O -0.17 -4.92 9.76 0.02 0.00 -4.92 16 16 C -0.39 -11.10 9.49 30.89 0.29 -10.80 16 17 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 20 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 C -0.27 -6.11 9.10 -39.25 -0.36 -6.46 16 25 H 0.13 0.05 8.14 -51.92 -0.42 -0.37 16 26 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.13 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 29 H 0.13 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 35 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 36 H 0.11 1.65 6.29 -52.48 -0.33 1.32 16 37 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.13 3.13 5.64 -52.48 -0.30 2.84 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -37.80 354.59 -7.92 -45.72 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.48 Total: 0.65 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -0.65 Total: -24.64 kcal Atomic # 7 Polarization: -25.25 SS G_CDS: 0.76 Total: -24.49 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -2.29 Total: -30.60 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 13.01 SS G_CDS: -0.58 Total: 12.43 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.80 -7.92 -45.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882993814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.198 kcal (2) G-P(sol) polarization free energy of solvation -37.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds